Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47166 * 2 1 4 4 C 1.50704 * 109.47567 * 119.99724 * 2 1 3 5 5 C 1.33641 * 126.03603 * 120.00064 * 4 2 1 6 6 N 1.31783 * 114.49772 * 180.02562 * 5 4 2 7 7 C 1.29020 * 117.12561 * 359.97438 * 6 5 4 8 8 C 1.50700 * 124.91962 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47391 * 90.02354 * 8 7 6 10 10 C 1.46891 * 111.00314 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47413 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47173 * 300.00234 * 11 10 9 13 13 C 1.53001 * 109.46883 * 59.99906 * 11 10 9 14 14 C 1.50699 * 109.47673 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99429 * 1.24917 * 14 11 10 16 16 C 1.37874 * 120.00288 * 181.23777 * 14 11 10 17 17 N 1.31513 * 119.99953 * 194.11414 * 16 14 11 18 18 Si 1.86801 * 119.99848 * 14.11894 * 16 14 11 19 19 H 1.48498 * 109.47378 * 84.52842 * 18 16 14 20 20 H 1.48503 * 109.46831 * 204.53126 * 18 16 14 21 21 H 1.48498 * 109.46833 * 324.52726 * 18 16 14 22 22 S 1.70978 * 110.16954 * 359.73129 * 7 6 5 23 23 H 1.08992 * 109.47207 * 299.99665 * 1 2 3 24 24 H 1.09008 * 109.46546 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46954 * 60.00387 * 1 2 3 26 26 H 1.09004 * 109.47612 * 240.00214 * 2 1 3 27 27 H 1.09004 * 109.46680 * 59.99643 * 3 2 1 28 28 H 1.08990 * 109.47260 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46953 * 300.00445 * 3 2 1 30 30 H 1.07997 * 122.75107 * 0.02562 * 5 4 2 31 31 H 1.08999 * 109.47835 * 210.02997 * 8 7 6 32 32 H 1.09006 * 109.46624 * 330.02692 * 8 7 6 33 33 H 1.00902 * 110.99770 * 303.96387 * 9 8 7 34 34 H 1.09002 * 109.47470 * 300.00286 * 10 9 8 35 35 H 1.09006 * 109.47100 * 60.00519 * 10 9 8 36 36 H 1.09006 * 109.47045 * 69.51155 * 12 11 10 37 37 H 1.08997 * 109.47136 * 189.51292 * 12 11 10 38 38 H 1.08997 * 109.46982 * 309.51618 * 12 11 10 39 39 H 1.08994 * 109.47041 * 60.00267 * 13 11 10 40 40 H 1.09008 * 109.47098 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47243 * 299.99758 * 13 11 10 42 42 H 0.97005 * 119.99518 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8040 -1.8014 1.2485 6 7 3.1098 -2.2346 2.4549 7 6 2.6396 -1.5694 3.4555 8 6 2.8785 -1.9071 4.9046 9 7 4.0867 -1.2168 5.3756 10 6 4.3518 -1.5237 6.7874 11 6 5.6143 -0.7880 7.2409 12 6 6.8020 -1.2402 6.3889 13 6 5.4130 0.7197 7.0758 14 6 5.8861 -1.1022 8.6895 15 1 5.2359 -1.7768 9.2268 16 6 6.9647 -0.5289 9.3287 17 7 7.3694 -1.0010 10.4876 18 14 7.8513 0.9186 8.5489 19 1 7.1446 2.1776 8.8966 20 1 9.2455 0.9770 9.0568 21 1 7.8685 0.7519 7.0734 22 16 1.7128 -0.2446 2.8995 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.1486 -2.2882 0.3482 31 1 2.0224 -1.5870 5.4984 32 1 3.0111 -2.9840 5.0096 33 1 4.8826 -1.4476 4.7999 34 1 3.5059 -1.2011 7.3945 35 1 4.4949 -2.5979 6.9051 36 1 6.6840 -0.8646 5.3724 37 1 7.7254 -0.8490 6.8159 38 1 6.8427 -2.3293 6.3712 39 1 4.5670 1.0419 7.6827 40 1 6.3127 1.2439 7.3984 41 1 5.2164 0.9475 6.0281 42 1 8.1281 -0.5974 10.9375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459737045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = 23.017978 kcal Electronic energy + Delta-G solvation = -19904.184404 eV Core-core repulsion = 17010.268199 eV Total energy + Delta-G solvation = -2893.916204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74323 -38.96328 -36.85432 -35.59691 -33.66640 -30.82835 -28.20406 -28.03218 -27.92586 -27.06791 -25.65730 -24.03417 -22.35503 -20.72064 -20.26717 -18.76655 -18.06759 -17.41534 -16.79666 -16.39623 -15.98198 -15.29030 -15.07996 -14.97886 -14.86071 -14.76680 -14.44911 -14.03910 -13.95687 -13.69699 -13.65403 -13.19134 -13.06677 -12.69031 -12.55293 -12.32307 -12.29106 -12.13751 -11.93470 -11.88343 -11.64303 -11.62866 -10.95494 -10.58616 -10.54797 -10.32718 -10.13175 -9.75580 -9.35160 -8.28898 -6.27696 -0.25737 0.42888 0.87486 1.36678 1.39494 1.50114 1.85516 2.36275 3.06867 3.10170 3.52765 3.75234 3.96227 4.02970 4.21833 4.23426 4.39131 4.47800 4.52635 4.55750 4.60538 4.66314 4.76770 4.83906 4.90862 4.95008 4.95612 5.00683 5.08328 5.10407 5.20227 5.27522 5.29486 5.34774 5.35689 5.57323 5.73942 5.83216 6.03882 6.29948 6.43658 6.78298 6.81301 7.37719 8.88207 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.003528 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.313022 B = 7934.864440 C = 8253.937088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.017 4.017 3 C -0.147 4.147 4 C -0.213 4.213 5 C 0.014 3.986 6 N -0.497 5.497 7 C 0.031 3.969 8 C 0.134 3.866 9 N -0.678 5.678 10 C 0.097 3.903 11 C 0.036 3.964 12 C -0.141 4.141 13 C -0.131 4.131 14 C -0.512 4.512 15 H 0.033 0.967 16 C 0.018 3.982 17 N -0.948 5.948 18 Si 0.943 3.057 19 H -0.284 1.284 20 H -0.317 1.317 21 H -0.216 1.216 22 S 0.165 5.835 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.189 0.811 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.342 0.658 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.021 0.979 41 H 0.067 0.933 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.038 3.785 -24.437 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.334 4.334 5 C -0.137 4.137 6 N -0.213 5.213 7 C -0.246 4.246 8 C 0.002 3.998 9 N -0.311 5.311 10 C -0.032 4.032 11 C 0.035 3.965 12 C -0.198 4.198 13 C -0.188 4.188 14 C -0.550 4.550 15 H 0.051 0.949 16 C -0.179 4.179 17 N -0.588 5.588 18 Si 0.773 3.227 19 H -0.211 1.211 20 H -0.246 1.246 21 H -0.141 1.141 22 S 0.420 5.580 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.206 0.794 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.086 0.914 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.496 4.682 -23.520 28.022 hybrid contribution 1.403 -1.089 -0.087 1.779 sum -13.093 3.593 -23.607 27.233 Atomic orbital electron populations 1.21922 0.93090 1.02379 1.02937 1.19755 0.96475 0.95655 0.91930 1.21938 1.01213 0.94443 1.02913 1.26471 1.06296 1.01704 0.98966 1.21982 1.00035 0.96249 0.95396 1.66269 1.23487 1.32143 0.99368 1.26833 1.01309 0.97028 0.99426 1.20443 0.95512 0.97519 0.86354 1.60615 1.06054 1.60665 1.03732 1.21694 0.97886 0.96519 0.87055 1.18455 0.92240 0.93017 0.92759 1.22212 0.99094 0.99911 0.98621 1.22094 0.98851 0.96892 1.00934 1.21198 1.11035 1.26919 0.95889 0.94875 1.25771 0.97377 0.99483 0.95289 1.70109 1.27472 1.42171 1.19009 0.86354 0.75281 0.79716 0.81317 1.21102 1.24645 1.14057 1.83822 1.47641 1.27943 0.98602 0.92970 0.92495 0.90003 0.87633 0.93054 0.92881 0.89924 0.79448 0.87978 0.92745 0.83900 0.91673 0.96441 0.92613 0.94180 0.94193 0.93755 0.96058 0.91406 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.14 71.98 0.66 -0.88 16 2 C -0.02 -0.21 3.32 -11.54 -0.04 -0.25 16 3 C -0.15 -1.76 9.13 71.98 0.66 -1.10 16 4 C -0.21 -3.97 5.15 24.64 0.13 -3.84 16 5 C 0.01 0.30 11.22 83.66 0.94 1.24 16 6 N -0.50 -13.59 10.54 -191.45 -2.02 -15.61 16 7 C 0.03 0.81 6.90 88.52 0.61 1.42 16 8 C 0.13 3.63 6.26 85.56 0.54 4.16 16 9 N -0.68 -21.39 5.71 -517.94 -2.96 -24.35 16 10 C 0.10 3.69 4.57 86.30 0.39 4.08 16 11 C 0.04 1.61 0.57 -52.93 -0.03 1.58 16 12 C -0.14 -5.85 7.24 71.98 0.52 -5.33 16 13 C -0.13 -5.43 7.54 71.98 0.54 -4.89 16 14 C -0.51 -28.62 8.62 25.60 0.22 -28.40 16 15 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 16 C 0.02 1.04 5.32 84.65 0.45 1.49 16 17 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 18 Si 0.94 45.43 22.79 68.60 1.56 46.99 16 19 H -0.28 -13.41 7.10 99.48 0.71 -12.71 16 20 H -0.32 -15.59 7.11 99.48 0.71 -14.88 16 21 H -0.22 -9.29 4.65 99.48 0.46 -8.83 16 22 S 0.17 3.51 22.95 -56.49 -1.30 2.21 16 23 H 0.05 0.62 8.09 -2.39 -0.02 0.60 16 24 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.11 1.00 8.10 -2.39 -0.02 0.98 16 27 H 0.05 0.69 8.06 -2.39 -0.02 0.67 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.34 11.01 6.99 -89.69 -0.63 10.38 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.06 1.98 7.06 -2.38 -0.02 1.97 16 37 H 0.04 1.76 4.30 -2.39 -0.01 1.75 16 38 H 0.04 1.63 8.12 -2.39 -0.02 1.61 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.02 0.92 2.26 -2.38 -0.01 0.91 16 41 H 0.07 2.47 7.60 -2.39 -0.02 2.46 16 42 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -65.85 338.00 1.31 -64.54 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.13 Total: 16.37 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 5.59 Total: -30.72 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.68 Total: -99.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.56 Total: 46.99 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.30 Total: 2.21 kcal Total: -65.85 1.31 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.560 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds