Wall clock time and date at job start Tue Mar 31 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00522 * 2 1 4 4 C 1.52995 * 109.47143 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47035 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.46858 * 180.02562 * 5 4 3 7 7 C 1.36454 * 125.85130 * 84.98416 * 6 5 4 8 8 C 1.34956 * 108.94396 * 179.97438 * 7 6 5 9 9 C 1.41206 * 108.25105 * 359.97438 * 8 7 6 10 10 N 1.32931 * 126.38025 * 179.97438 * 9 8 7 11 11 C 1.33832 * 120.00335 * 0.02599 * 10 9 8 12 12 O 1.21843 * 119.99683 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00147 * 179.72624 * 11 10 9 14 14 C 1.46495 * 119.99663 * 180.27726 * 13 11 10 15 15 C 1.50701 * 109.46728 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00156 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99704 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00459 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46954 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47302 * 119.99286 * 19 17 15 22 22 H 1.48494 * 109.47552 * 239.99915 * 19 17 15 23 23 N 1.37423 * 107.23786 * 0.22725 * 9 8 7 24 24 H 0.97004 * 126.36573 * 179.77087 * 23 9 8 25 25 H 1.08998 * 109.47030 * 300.00349 * 1 2 3 26 26 H 1.09004 * 109.46956 * 60.00092 * 1 2 3 27 27 H 1.08994 * 109.47967 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47069 * 59.99443 * 3 2 1 29 29 H 1.09001 * 109.47076 * 299.99942 * 3 2 1 30 30 H 1.09003 * 109.47328 * 59.99926 * 4 3 2 31 31 H 1.08996 * 109.47456 * 299.99642 * 4 3 2 32 32 H 1.08999 * 109.46302 * 60.00209 * 5 4 3 33 33 H 1.08996 * 109.47074 * 300.00327 * 5 4 3 34 34 H 1.07998 * 125.52893 * 359.97438 * 7 6 5 35 35 H 1.08006 * 125.87713 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99736 * 0.26996 * 13 11 10 37 37 H 1.09007 * 109.47376 * 299.99203 * 14 13 11 38 38 H 1.08997 * 109.47774 * 59.99894 * 14 13 11 39 39 H 0.97003 * 120.00172 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6183 2.4663 0.0000 7 6 6.4073 2.3063 -1.1017 8 6 7.6972 2.2391 -0.7108 9 6 7.7401 2.3611 0.6953 10 7 8.8305 2.3422 1.4555 11 6 10.0361 2.1967 0.8929 12 8 10.1342 2.0810 -0.3160 13 7 11.1420 2.1830 1.6632 14 6 12.4620 2.0298 1.0467 15 6 13.5217 2.0471 2.1181 16 1 13.2400 2.1612 3.1544 17 6 14.8509 1.9182 1.7752 18 7 15.1940 1.7797 0.5132 19 14 16.1646 1.9403 3.1031 20 1 15.5226 2.1075 4.4317 21 1 16.9187 0.6614 3.0747 22 1 17.0966 3.0702 2.8586 23 7 6.4443 2.4973 1.1320 24 1 6.1551 2.5979 2.0524 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8575 0.6433 -0.8891 31 1 3.8567 0.6438 0.8908 32 1 3.8359 3.1235 0.8896 33 1 3.8366 3.1226 -0.8904 34 1 6.0564 2.2435 -2.1212 35 1 8.5502 2.1144 -1.3616 36 1 11.0637 2.2748 2.6257 37 1 12.5042 1.0826 0.5088 38 1 12.6358 2.8507 0.3511 39 1 16.1291 1.6886 0.2719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488497010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:00 Heat of formation + Delta-G solvation = -0.500757 kcal Electronic energy + Delta-G solvation = -20835.576989 eV Core-core repulsion = 17394.347721 eV Total energy + Delta-G solvation = -3441.229268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.36480 -40.24992 -38.94446 -36.48114 -35.72310 -34.20498 -34.02171 -32.55148 -30.97623 -29.13906 -27.63632 -25.82023 -24.78964 -23.11874 -22.81317 -22.55650 -21.15729 -19.34731 -18.39247 -17.57819 -17.29194 -17.04843 -16.98982 -16.63435 -16.39428 -16.16555 -15.74216 -15.52054 -15.19492 -14.83462 -14.69694 -14.13934 -14.05805 -13.94712 -13.38039 -13.17220 -12.83796 -12.73295 -12.70992 -12.18827 -12.05570 -11.98518 -11.50170 -11.42833 -11.22888 -10.77412 -10.61412 -10.58564 -9.98590 -9.70780 -8.42033 -8.26249 -6.42814 0.21177 0.43048 1.42683 1.45867 1.59830 1.62766 2.32229 2.45378 2.82723 3.05305 3.07622 3.17339 3.73780 3.86671 4.04843 4.10274 4.23861 4.32503 4.41910 4.49449 4.54802 4.58891 4.63173 4.76649 4.88880 5.01229 5.12539 5.16467 5.27507 5.30157 5.55212 5.79366 5.85593 6.00868 6.08546 6.24558 6.41555 6.69088 6.86140 7.24972 7.27814 8.17902 8.86983 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.051297 B = 0.002266 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.711272 B =12351.996637 C =12528.374522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.425 6.425 3 C 0.061 3.939 4 C -0.142 4.142 5 C 0.136 3.864 6 N -0.370 5.370 7 C 0.195 3.805 8 C -0.354 4.354 9 C 0.469 3.531 10 N -0.709 5.709 11 C 0.663 3.337 12 O -0.667 6.667 13 N -0.708 5.708 14 C 0.286 3.714 15 C -0.557 4.557 16 H 0.078 0.922 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.471 5.471 24 H 0.457 0.543 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.248 0.752 35 H 0.150 0.850 36 H 0.399 0.601 37 H -0.018 1.018 38 H -0.017 1.017 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.728 2.313 -1.609 36.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.345 6.345 3 C -0.016 4.016 4 C -0.181 4.181 5 C 0.018 3.982 6 N -0.160 5.160 7 C 0.056 3.944 8 C -0.386 4.386 9 C 0.212 3.788 10 N -0.472 5.472 11 C 0.362 3.638 12 O -0.552 6.552 13 N -0.359 5.359 14 C 0.162 3.838 15 C -0.595 4.595 16 H 0.096 0.904 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.815 3.185 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.199 1.199 23 N -0.198 5.198 24 H 0.308 0.692 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.264 0.736 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.000 1.000 38 H 0.001 0.999 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -36.622 2.158 -1.602 36.721 hybrid contribution 0.939 -0.082 0.509 1.072 sum -35.683 2.076 -1.093 35.760 Atomic orbital electron populations 1.22896 0.79344 1.03570 1.01119 1.87849 1.21565 1.29410 1.95709 1.22499 0.92120 0.84570 1.02369 1.21993 0.94615 0.97464 1.03986 1.22229 0.69800 0.97418 1.08731 1.47061 1.04343 1.68064 0.96518 1.23375 0.88563 0.89264 0.93217 1.22362 0.99388 1.21878 0.94975 1.18992 0.84603 0.84666 0.90523 1.68124 0.96277 1.44969 1.37785 1.17140 0.84988 0.77700 0.83968 1.90662 1.88768 1.59131 1.16623 1.45095 1.05093 1.75549 1.10124 1.18391 0.78697 0.93332 0.93345 1.21642 0.91752 1.52193 0.93874 0.90406 1.26139 1.01287 0.93719 0.98589 1.70166 1.18588 1.49313 1.18864 0.85012 0.77337 0.77965 0.78234 1.18053 1.19986 1.19942 1.44135 0.99855 1.72176 1.03683 0.69242 0.93051 0.92620 0.89427 0.91614 0.90508 0.90355 0.92331 0.86300 0.83222 0.73605 0.83253 0.76668 1.00009 0.99932 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.43 -4.80 10.70 -148.98 -1.59 -6.39 16 3 C 0.06 0.23 5.94 71.98 0.43 0.66 16 4 C -0.14 -0.68 5.91 30.59 0.18 -0.50 16 5 C 0.14 0.12 6.44 86.38 0.56 0.68 16 6 N -0.37 -4.34 3.65 -347.11 -1.27 -5.61 16 7 C 0.20 3.00 11.45 83.22 0.95 3.96 16 8 C -0.35 -11.27 9.52 22.24 0.21 -11.06 16 9 C 0.47 16.31 8.07 133.95 1.08 17.39 16 10 N -0.71 -31.95 10.59 -322.55 -3.42 -35.36 16 11 C 0.66 36.49 8.47 179.35 1.52 38.01 16 12 O -0.67 -39.96 13.26 -4.81 -0.06 -40.02 16 13 N -0.71 -39.81 5.55 -482.83 -2.68 -42.49 16 14 C 0.29 18.42 5.43 85.63 0.46 18.89 16 15 C -0.56 -34.49 9.28 25.60 0.24 -34.25 16 16 H 0.08 4.48 7.60 -2.91 -0.02 4.46 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -60.24 13.29 21.45 0.28 -59.95 16 19 Si 0.99 46.07 29.54 68.60 2.03 48.09 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 N -0.47 -9.53 7.38 -54.79 -0.40 -9.94 16 24 H 0.46 6.79 8.96 -213.27 -1.91 4.87 16 25 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.15 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.25 0.88 8.06 -2.91 -0.02 0.85 16 35 H 0.15 6.21 5.77 -2.91 -0.02 6.19 16 36 H 0.40 20.36 8.42 -92.71 -0.78 19.57 16 37 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 38 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 39 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -98.98 338.94 -1.39 -100.37 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -1.62 Total: 15.58 kcal Atomic # 6 Polarization: 28.38 SS G_CDS: 7.34 Total: 35.72 kcal Atomic # 7 Polarization: -145.87 SS G_CDS: -7.48 Total: -153.35 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -1.66 Total: -46.41 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -98.98 -1.39 -100.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488497010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.868 kcal (2) G-P(sol) polarization free energy of solvation -98.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds