Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00125 * 2 1 4 4 C 1.53001 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47771 * 54.99850 * 4 3 2 6 6 C 1.52996 * 109.47275 * 294.99682 * 4 3 2 7 7 N 1.46504 * 109.46731 * 175.00249 * 4 3 2 8 8 C 1.36449 * 125.85750 * 34.99593 * 7 4 3 9 9 C 1.34953 * 108.94907 * 179.72446 * 8 7 4 10 10 C 1.41211 * 108.24661 * 0.43888 * 9 8 7 11 11 N 1.32934 * 126.37999 * 179.82567 * 10 9 8 12 12 C 1.33830 * 119.99844 * 359.69075 * 11 10 9 13 13 O 1.21829 * 120.00379 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99633 * 179.97438 * 12 11 10 15 15 C 1.46494 * 119.99635 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47011 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99976 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99824 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46978 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46892 * 119.99697 * 20 18 16 23 23 H 1.48501 * 109.47339 * 240.00023 * 20 18 16 24 24 N 1.37425 * 107.23796 * 359.56501 * 10 9 8 25 25 H 0.96998 * 126.36361 * 180.29378 * 24 10 9 26 26 H 1.09003 * 109.47580 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46895 * 300.00359 * 1 2 3 28 28 H 1.09006 * 109.46988 * 59.99629 * 1 2 3 29 29 H 1.09000 * 109.47220 * 60.00358 * 3 2 1 30 30 H 1.08996 * 109.47029 * 299.99587 * 3 2 1 31 31 H 1.09008 * 109.47070 * 300.00508 * 6 4 3 32 32 H 1.09001 * 109.47028 * 60.00175 * 6 4 3 33 33 H 1.09000 * 109.47555 * 180.02562 * 6 4 3 34 34 H 1.08005 * 125.52299 * 0.02562 * 8 7 4 35 35 H 1.08007 * 125.88014 * 180.30488 * 9 8 7 36 36 H 0.96995 * 120.00015 * 359.72610 * 14 12 11 37 37 H 1.09005 * 109.47306 * 299.99972 * 15 14 12 38 38 H 1.09002 * 109.47518 * 60.00210 * 15 14 12 39 39 H 0.96998 * 119.99718 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8508 0.5683 -0.8426 6 6 3.9962 0.5363 1.3064 7 7 4.1309 2.5176 -0.1210 8 6 3.6327 3.6673 0.4193 9 6 4.4528 4.6913 0.1033 10 6 5.5137 4.1833 -0.6780 11 7 6.5241 4.8822 -1.1857 12 6 6.5968 6.2020 -0.9759 13 8 5.7369 6.7629 -0.3201 14 7 7.6216 6.9105 -1.4901 15 6 7.7016 8.3551 -1.2600 16 6 8.9313 8.9042 -1.9365 17 1 9.5877 8.2431 -2.4828 18 6 9.2182 10.2505 -1.8579 19 7 8.4190 11.0554 -1.1923 20 14 10.7428 10.9309 -2.6958 21 1 11.4697 9.8272 -3.3730 22 1 10.3428 11.9490 -3.7002 23 1 11.6274 11.5576 -1.6809 24 7 5.3101 2.8307 -0.8109 25 1 5.8773 2.2083 -1.2923 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.6809 1.1525 2.1485 32 1 3.5532 -0.4556 1.3960 33 1 5.0829 0.4505 1.3062 34 1 2.7309 3.7443 1.0088 35 1 4.3195 5.7225 0.3957 36 1 8.3084 6.4633 -2.0089 37 1 6.8150 8.8381 -1.6709 38 1 7.7581 8.5499 -0.1890 39 1 8.6207 12.0026 -1.1374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488688954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = 38.871631 kcal Electronic energy + Delta-G solvation = -21296.442768 eV Core-core repulsion = 17856.920816 eV Total energy + Delta-G solvation = -3439.521953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40214 -38.88373 -38.34750 -35.44252 -33.91445 -32.59694 -32.02632 -31.50623 -28.85148 -28.05207 -26.86403 -26.04080 -23.25989 -22.59892 -21.54101 -21.08002 -19.33278 -18.08645 -17.14531 -16.73677 -16.34771 -16.05855 -15.61071 -15.24182 -15.17559 -14.83319 -14.48013 -14.27036 -13.86737 -13.67850 -13.23367 -13.07201 -12.81942 -12.57025 -12.21878 -12.11243 -11.77521 -11.65088 -11.57864 -10.80992 -10.77908 -10.42531 -10.35106 -10.14505 -9.59725 -9.49441 -9.16434 -8.53873 -8.29422 -7.67680 -7.05737 -6.00017 -4.04590 1.18924 1.32275 2.90922 3.08767 3.34818 3.41033 3.45594 3.50637 4.04964 4.19743 4.38963 4.41729 4.52085 4.67115 4.74161 4.74757 4.84718 4.89188 4.91263 5.09768 5.15484 5.22680 5.35926 5.50679 5.60209 5.65062 6.12598 6.30156 6.40758 6.88423 7.18822 7.39352 7.64998 7.78635 7.85068 8.03075 8.19119 8.30992 8.98382 9.18898 9.57393 9.97275 11.10633 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.057856 B = 0.002497 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.846616 B =11209.026976 C =11414.869917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.054 3.946 4 C 0.169 3.831 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.398 5.398 8 C 0.123 3.877 9 C -0.279 4.279 10 C 0.489 3.511 11 N -0.672 5.672 12 C 0.671 3.329 13 O -0.628 6.628 14 N -0.701 5.701 15 C 0.263 3.737 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.888 5.888 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.489 5.489 25 H 0.444 0.556 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.185 0.815 35 H 0.193 0.807 36 H 0.391 0.609 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -26.168 4.084 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.024 4.024 4 C 0.068 3.932 5 H 0.122 0.878 6 C -0.224 4.224 7 N -0.193 5.193 8 C -0.010 4.010 9 C -0.311 4.311 10 C 0.228 3.772 11 N -0.429 5.429 12 C 0.369 3.631 13 O -0.511 6.511 14 N -0.350 5.350 15 C 0.142 3.858 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.526 5.526 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 N -0.219 5.219 25 H 0.291 0.709 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.201 0.799 35 H 0.210 0.790 36 H 0.224 0.776 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.327 -26.137 4.089 31.088 hybrid contribution 0.701 0.505 -0.545 1.021 sum -15.626 -25.632 3.544 30.228 Atomic orbital electron populations 1.22820 0.79718 1.03313 1.00555 1.87804 1.20640 1.26334 1.95578 1.22698 0.91651 0.85940 1.02122 1.20972 0.91725 0.79521 1.01023 0.87799 1.22301 1.02397 1.01786 0.95938 1.46229 1.16333 1.07193 1.49585 1.22593 0.98644 0.84007 0.95753 1.22858 0.97366 1.02312 1.08535 1.18776 0.89738 0.81834 0.86893 1.68226 1.26707 1.09545 1.38409 1.16731 0.82680 0.83620 0.80025 1.90679 1.41295 1.73980 1.45104 1.45417 1.24749 1.10423 1.54436 1.18968 0.96837 0.73183 0.96850 1.21338 1.08645 0.93548 1.33837 0.91851 1.24953 0.97127 0.96728 0.95422 1.70003 1.37155 1.04455 1.41026 0.86366 0.82504 0.78932 0.79122 1.19645 1.20927 1.20921 1.44002 1.17854 1.07559 1.52480 0.70869 0.89063 0.93546 0.93609 0.91749 0.91750 0.91511 0.89708 0.91617 0.79855 0.79040 0.77634 0.95881 0.95895 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.16 10.24 -35.23 -0.36 -2.53 16 3 C 0.05 0.26 4.85 37.16 0.18 0.44 16 4 C 0.17 0.95 3.63 -67.93 -0.25 0.71 16 5 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 6 C -0.17 -0.85 9.41 37.16 0.35 -0.50 16 7 N -0.40 -3.47 3.56 -54.57 -0.19 -3.67 16 8 C 0.12 1.21 10.57 -16.66 -0.18 1.03 16 9 C -0.28 -4.33 9.52 -39.62 -0.38 -4.71 16 10 C 0.49 8.28 8.07 -155.28 -1.25 7.03 16 11 N -0.67 -14.17 10.59 -15.79 -0.17 -14.33 16 12 C 0.67 16.89 8.47 -87.75 -0.74 16.14 16 13 O -0.63 -17.00 13.26 5.07 0.07 -16.93 16 14 N -0.70 -18.15 5.55 -66.61 -0.37 -18.52 16 15 C 0.26 7.79 5.43 -5.19 -0.03 7.77 16 16 C -0.54 -15.85 9.28 -34.44 -0.32 -16.17 16 17 H 0.06 1.78 7.60 -52.49 -0.40 1.38 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 20 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 N -0.49 -5.59 7.38 31.33 0.23 -5.36 16 25 H 0.44 3.96 8.96 -182.55 -1.64 2.33 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.23 7.40 -51.93 -0.38 -0.15 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.08 0.38 7.82 -51.93 -0.41 -0.02 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.18 1.00 7.37 -52.48 -0.39 0.61 16 35 H 0.19 3.60 5.77 -52.48 -0.30 3.29 16 36 H 0.39 9.29 8.42 -40.82 -0.34 8.94 16 37 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -38.54 335.36 -8.42 -46.96 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.80 Total: 4.41 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -1.60 Total: 14.65 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: 0.24 Total: -68.73 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.29 Total: -19.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -38.54 -8.42 -46.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488688954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.836 kcal (2) G-P(sol) polarization free energy of solvation -38.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds