Wall clock time and date at job start Tue Mar 31 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47108 * 87.80930 * 3 2 1 5 5 C 1.53007 * 109.47234 * 180.02562 * 4 3 2 6 6 C 1.53110 * 109.52328 * 174.99918 * 5 4 3 7 7 C 1.53032 * 109.27921 * 177.62088 * 6 5 4 8 8 N 1.46852 * 109.52437 * 300.82148 * 7 6 5 9 9 C 1.46902 * 110.99971 * 185.83517 * 8 7 6 10 10 C 1.53001 * 109.46901 * 169.99744 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 S 1.81002 * 109.47004 * 180.02562 * 11 10 9 13 13 C 1.76193 * 100.00049 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00026 * 359.97438 * 13 12 11 15 15 C 1.38806 * 120.00056 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00121 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99856 * 0.02562 * 15 13 12 18 18 H 1.48489 * 109.47437 * 89.99924 * 17 15 13 19 19 H 1.48500 * 109.46931 * 210.00082 * 17 15 13 20 20 H 1.48503 * 109.46655 * 329.99597 * 17 15 13 21 21 C 1.46848 * 111.19424 * 61.74147 * 8 7 6 22 22 C 1.53034 * 109.52086 * 298.25597 * 21 8 7 23 23 H 1.09001 * 109.47341 * 327.80848 * 3 2 1 24 24 H 1.09001 * 109.47324 * 207.80794 * 3 2 1 25 25 H 1.08992 * 109.47020 * 59.99889 * 4 3 2 26 26 H 1.09007 * 109.47309 * 299.99903 * 4 3 2 27 27 H 1.08996 * 109.52123 * 54.87154 * 5 4 3 28 28 H 1.09000 * 109.50668 * 57.67954 * 6 5 4 29 29 H 1.08999 * 109.50680 * 297.56667 * 6 5 4 30 30 H 1.08999 * 109.46700 * 180.80460 * 7 6 5 31 31 H 1.09001 * 109.45697 * 60.83587 * 7 6 5 32 32 H 1.09001 * 109.46712 * 50.00147 * 9 8 7 33 33 H 1.09002 * 109.47411 * 290.00258 * 9 8 7 34 34 H 1.09001 * 109.46652 * 60.00371 * 10 9 8 35 35 H 1.08992 * 109.47514 * 300.00460 * 10 9 8 36 36 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 37 37 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 38 38 H 0.96999 * 120.00138 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.46425 * 58.27501 * 21 8 7 40 40 H 1.09002 * 109.45789 * 178.23868 * 21 8 7 41 41 H 1.08996 * 109.50601 * 299.24170 * 22 21 8 42 42 H 1.09006 * 109.50179 * 179.12409 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0543 -1.4415 5 6 4.6480 -0.0542 -1.4415 6 6 5.1597 -0.2346 -2.8732 7 6 6.6889 -0.1743 -2.8747 8 7 7.1295 1.1195 -2.3377 9 6 8.5865 1.2682 -2.4520 10 6 8.9797 2.7089 -2.1192 11 6 10.4972 2.8639 -2.2388 12 16 10.9624 4.5681 -1.8444 13 6 12.7086 4.4653 -2.0560 14 1 13.1631 3.5298 -2.3473 15 6 13.5002 5.5862 -1.8474 16 7 14.8048 5.5093 -2.0050 17 14 12.7142 7.2036 -1.3416 18 1 12.6491 7.2804 0.1399 19 1 13.5274 8.3327 -1.8605 20 1 11.3415 7.2834 -1.9023 21 6 6.6901 1.2948 -0.9475 22 6 5.1609 1.2784 -0.8886 23 1 2.9717 -0.8689 0.5475 24 1 2.9709 0.9098 0.4794 25 1 2.7543 0.8152 -1.9889 26 1 2.7551 -0.9634 -1.9209 27 1 5.0123 -0.8713 -0.8188 28 1 4.7636 0.5609 -3.5043 29 1 4.8332 -1.2011 -3.2573 30 1 7.0559 -0.2882 -3.8947 31 1 7.0845 -0.9787 -2.2545 32 1 8.8970 1.0328 -3.4699 33 1 9.0770 0.5876 -1.7559 34 1 8.6692 2.9442 -1.1012 35 1 8.4893 3.3894 -2.8151 36 1 10.9879 2.1833 -1.5431 37 1 10.8073 2.6287 -3.2569 38 1 15.3579 6.2928 -1.8596 39 1 7.0858 0.4835 -0.3364 40 1 7.0580 2.2480 -0.5678 41 1 4.7648 2.0978 -1.4884 42 1 4.8353 1.3929 0.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516864658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:07 Heat of formation + Delta-G solvation = -7.103538 kcal Electronic energy + Delta-G solvation = -19039.807070 eV Core-core repulsion = 16144.584699 eV Total energy + Delta-G solvation = -2895.222371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.62197 -37.38298 -35.88009 -33.33748 -32.43389 -31.06023 -30.86598 -26.80164 -25.68663 -24.33695 -23.56072 -21.79862 -20.70549 -19.98001 -17.92502 -17.45750 -16.11899 -15.90211 -15.34543 -14.97850 -14.86899 -14.72000 -14.39270 -14.20178 -13.92736 -13.59392 -13.35001 -12.87356 -12.84910 -12.66737 -12.46759 -12.20926 -12.01242 -11.77183 -11.50132 -11.45822 -11.37237 -11.07100 -11.03275 -10.95377 -10.68579 -10.51199 -10.24800 -10.07351 -9.75419 -9.00314 -8.55572 -8.37367 -6.93613 -6.28141 -4.00194 2.37096 2.40859 3.01053 3.30114 3.45865 3.54959 3.55186 3.85856 4.31629 4.32056 4.38156 4.50211 4.73551 4.78159 4.83829 4.97810 5.01042 5.10520 5.14656 5.16439 5.22933 5.31403 5.35582 5.42562 5.49619 5.60681 5.61268 5.64271 5.71057 5.80868 5.82521 5.86762 5.90889 6.02666 6.15561 6.24985 6.49402 6.65262 7.04124 7.05619 7.18009 7.95599 8.44455 9.17817 10.81320 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033753 B = 0.002504 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.359106 B =11179.955879 C =11814.236700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.207 3.793 3 C -0.030 4.030 4 C -0.110 4.110 5 C -0.088 4.088 6 C -0.111 4.111 7 C 0.055 3.945 8 N -0.538 5.538 9 C 0.060 3.940 10 C -0.097 4.097 11 C -0.082 4.082 12 S -0.215 6.215 13 C -0.502 4.502 14 H 0.087 0.913 15 C 0.091 3.909 16 N -0.882 5.882 17 Si 0.862 3.138 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.237 1.237 21 C 0.050 3.950 22 C -0.116 4.116 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.270 0.730 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -13.110 1.744 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.111 4.111 3 C -0.070 4.070 4 C -0.149 4.149 5 C -0.106 4.106 6 C -0.149 4.149 7 C -0.073 4.073 8 N -0.262 5.262 9 C -0.069 4.069 10 C -0.135 4.135 11 C -0.231 4.231 12 S 0.012 5.988 13 C -0.650 4.650 14 H 0.105 0.895 15 C -0.117 4.117 16 N -0.519 5.519 17 Si 0.687 3.313 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.161 1.161 21 C -0.078 4.078 22 C -0.153 4.153 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.028 -11.762 1.770 25.919 hybrid contribution 1.694 -0.925 0.381 1.968 sum -21.334 -12.687 2.152 24.915 Atomic orbital electron populations 1.81248 1.13241 1.09012 1.08515 1.29338 0.95438 0.93092 0.93220 1.19446 0.81268 1.05959 1.00337 1.21600 0.95770 1.03484 0.94031 1.21223 0.93514 0.98480 0.97430 1.21618 0.94940 1.01996 0.96303 1.22063 0.95442 0.89766 1.00018 1.61918 1.13019 1.31656 1.19642 1.22145 0.86198 0.97254 1.01280 1.21340 0.94267 0.95487 1.02447 1.23020 0.97131 0.99570 1.03407 1.84149 1.11077 1.12073 1.91473 1.22130 0.87749 1.01280 1.53794 0.89461 1.24809 0.94301 0.98821 0.93815 1.69939 1.03749 1.30741 1.47476 0.86661 0.81586 0.83034 0.80016 1.19411 1.20143 1.16116 1.22163 0.95307 1.01599 0.88734 1.21739 0.95153 0.97436 1.00996 0.87372 0.87055 0.90744 0.91045 0.90934 0.90841 0.91603 0.90766 0.95114 0.90750 0.94901 0.91593 0.90689 0.91695 0.91410 0.92000 0.95039 0.89938 0.90713 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.77 18.54 42.15 0.78 -3.99 16 2 C 0.21 1.47 15.43 -20.76 -0.32 1.15 16 3 C -0.03 -0.09 5.46 -29.52 -0.16 -0.26 16 4 C -0.11 -0.42 4.64 -26.73 -0.12 -0.55 16 5 C -0.09 -0.43 2.25 -90.50 -0.20 -0.64 16 6 C -0.11 -0.69 5.38 -26.66 -0.14 -0.84 16 7 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 8 N -0.54 -5.53 4.66 -234.66 -1.09 -6.63 16 9 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 10 C -0.10 -1.43 5.15 -26.73 -0.14 -1.57 16 11 C -0.08 -1.56 5.67 37.16 0.21 -1.34 16 12 S -0.22 -5.20 19.41 -107.50 -2.09 -7.29 16 13 C -0.50 -14.50 10.04 30.94 0.31 -14.19 16 14 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 15 C 0.09 2.64 5.50 -17.43 -0.10 2.55 16 16 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 17 Si 0.86 21.45 27.74 -169.99 -4.72 16.74 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 21 C 0.05 0.45 5.29 -3.83 -0.02 0.43 16 22 C -0.12 -0.72 5.08 -26.65 -0.14 -0.85 16 23 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.11 0.22 6.64 -51.93 -0.34 -0.12 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 31 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 33 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 37 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.83 6.21 -51.93 -0.32 0.51 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.31 6.71 -51.93 -0.35 -0.04 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -32.70 349.74 -9.18 -41.88 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -7.25 Total: -5.11 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -0.86 Total: -14.97 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.46 Total: -36.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -2.09 Total: -7.29 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.70 -9.18 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516864658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.775 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds