Wall clock time and date at job start Tue Mar 31 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47494 * 2 1 4 4 C 1.50693 * 109.47334 * 120.00553 * 2 1 3 5 5 N 1.29032 * 124.91561 * 299.97167 * 4 2 1 6 6 C 1.31780 * 117.12316 * 179.97438 * 5 4 2 7 7 C 1.33631 * 114.50579 * 0.02562 * 6 5 4 8 8 C 1.50706 * 126.04051 * 179.73419 * 7 6 5 9 9 N 1.46899 * 109.46796 * 79.92645 * 8 7 6 10 10 C 1.46905 * 110.99505 * 200.27152 * 9 8 7 11 11 C 1.50707 * 109.46501 * 164.19591 * 10 9 8 12 12 H 1.07998 * 120.00243 * 4.62063 * 11 10 9 13 13 C 1.37881 * 119.99433 * 184.61770 * 11 10 9 14 14 N 1.31515 * 120.00138 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99898 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47117 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47209 * 119.99660 * 15 13 11 18 18 H 1.48496 * 109.47351 * 240.00383 * 15 13 11 19 19 C 1.46901 * 111.00147 * 76.32434 * 9 8 7 20 20 C 1.53005 * 109.46717 * 277.23581 * 19 9 8 21 21 C 1.53005 * 109.47039 * 37.23268 * 19 9 8 22 22 S 1.70976 * 124.91884 * 119.97261 * 4 2 1 23 23 H 1.08995 * 109.47262 * 299.99826 * 1 2 3 24 24 H 1.09007 * 109.47058 * 59.99927 * 1 2 3 25 25 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47005 * 240.00393 * 2 1 3 27 27 H 1.09003 * 109.46673 * 60.00190 * 3 2 1 28 28 H 1.08999 * 109.47270 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47272 * 300.00288 * 3 2 1 30 30 H 1.08002 * 122.74389 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46818 * 199.92835 * 8 7 6 32 32 H 1.08993 * 109.46892 * 319.92769 * 8 7 6 33 33 H 1.08993 * 109.47131 * 284.19213 * 10 9 8 34 34 H 1.08997 * 109.47025 * 44.19656 * 10 9 8 35 35 H 0.96995 * 119.99579 * 180.02562 * 14 13 11 36 36 H 1.08995 * 109.47242 * 157.23860 * 19 9 8 37 37 H 1.09003 * 109.46916 * 66.30666 * 20 19 9 38 38 H 1.08995 * 109.47187 * 186.30773 * 20 19 9 39 39 H 1.09000 * 109.47113 * 306.31267 * 20 19 9 40 40 H 1.08992 * 109.46802 * 50.75711 * 21 19 9 41 41 H 1.09004 * 109.46423 * 170.76163 * 21 19 9 42 42 H 1.09003 * 109.46861 * 290.75189 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 1.7802 -0.3531 2.4442 6 6 2.2992 -1.0881 3.4070 7 6 3.0301 -2.1228 2.9818 8 6 3.7433 -3.1229 3.8548 9 7 2.7820 -4.1213 4.3416 10 6 3.2933 -4.8054 5.5369 11 6 2.1618 -5.5216 6.2283 12 1 1.1787 -5.5360 5.7816 13 6 2.3820 -6.1586 7.4311 14 7 3.5791 -6.1407 7.9753 15 14 0.9798 -7.0470 8.2879 16 1 -0.2568 -6.9195 7.4755 17 1 1.3249 -8.4830 8.4428 18 1 0.7563 -6.4443 9.6265 19 6 2.4452 -5.0863 3.2864 20 6 1.3577 -4.4977 2.3853 21 6 3.6924 -5.3853 2.4520 22 16 3.0189 -2.1068 1.2198 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 2.1462 -0.8719 4.4541 31 1 4.5220 -3.6201 3.2763 32 1 4.1938 -2.6083 4.7035 33 1 4.0554 -5.5275 5.2441 34 1 3.7288 -4.0728 6.2164 35 1 3.7340 -6.5891 8.8213 36 1 2.0817 -6.0083 3.7399 37 1 1.7581 -3.6392 1.8460 38 1 1.0284 -5.2534 1.6723 39 1 0.5121 -4.1810 2.9958 40 1 4.5177 -5.6481 3.1136 41 1 3.4876 -6.2173 1.7782 42 1 3.9599 -4.5036 1.8696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535786355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:02 Heat of formation + Delta-G solvation = 22.425836 kcal Electronic energy + Delta-G solvation = -20549.343440 eV Core-core repulsion = 17655.401558 eV Total energy + Delta-G solvation = -2893.941881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87543 -39.41290 -36.29410 -34.96224 -32.88664 -31.72828 -28.75865 -28.09251 -28.00194 -26.94765 -24.99591 -23.96474 -22.73237 -20.80878 -19.47766 -19.02878 -18.36261 -17.20813 -16.63725 -16.13281 -16.02162 -15.51221 -15.42890 -15.08640 -14.76194 -14.64288 -14.10401 -13.86638 -13.75067 -13.58363 -13.34470 -12.98794 -12.84544 -12.78687 -12.68848 -12.52436 -12.36219 -12.19660 -12.11360 -12.00431 -11.88263 -11.83725 -11.54336 -11.33952 -10.62140 -10.47222 -9.75847 -9.59632 -8.98278 -8.20049 -6.29033 -0.19970 0.39279 0.79148 1.38919 1.40346 1.53238 1.91801 2.39970 3.11505 3.20112 3.34244 3.91780 3.95185 4.07032 4.12030 4.15627 4.20302 4.34240 4.49592 4.56021 4.61347 4.73919 4.77260 4.84671 4.88564 4.91711 4.93782 4.98450 5.01512 5.10019 5.14825 5.19944 5.24905 5.36398 5.37723 5.47189 5.49481 5.67046 6.06931 6.39581 6.61274 6.84553 6.86463 7.39991 8.90322 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.004156 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.349168 B = 6735.074514 C = 6890.604422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.017 4.017 3 C -0.135 4.135 4 C 0.041 3.959 5 N -0.488 5.488 6 C 0.037 3.963 7 C -0.204 4.204 8 C 0.119 3.881 9 N -0.531 5.531 10 C 0.210 3.790 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.279 1.279 19 C 0.076 3.924 20 C -0.146 4.146 21 C -0.169 4.169 22 S 0.147 5.853 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.060 0.940 32 H 0.077 0.923 33 H -0.030 1.030 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 10.426 -19.448 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 C -0.194 4.194 4 C -0.237 4.237 5 N -0.203 5.203 6 C -0.114 4.114 7 C -0.326 4.326 8 C -0.011 4.011 9 N -0.255 5.255 10 C 0.084 3.916 11 C -0.555 4.555 12 H 0.075 0.925 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.033 4.033 20 C -0.204 4.204 21 C -0.227 4.227 22 S 0.404 5.596 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.183 0.817 31 H 0.078 0.922 32 H 0.096 0.904 33 H -0.013 1.013 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.061 10.462 -19.839 22.522 hybrid contribution 0.216 -0.917 2.098 2.300 sum -1.844 9.544 -17.741 20.230 Atomic orbital electron populations 1.21783 0.92564 1.02163 1.03043 1.20037 0.97147 0.96413 0.90341 1.21774 1.00997 0.93526 1.03071 1.27665 1.00781 0.97842 0.97363 1.66204 1.23721 1.31093 0.99242 1.21644 0.97053 0.92785 0.99888 1.25782 1.07796 1.02546 0.96433 1.20544 0.92541 0.91601 0.96424 1.62230 1.42009 1.15515 1.05716 1.19409 0.93707 0.91655 0.86853 1.21441 0.96532 1.32074 1.05483 0.92518 1.25815 0.98216 0.97385 0.97907 1.70072 1.22849 1.45115 1.19305 0.85410 0.79311 0.78103 0.78253 1.19146 1.20303 1.20482 1.21645 0.95592 0.94870 0.91169 1.22262 0.97826 1.01819 0.98537 1.22344 0.98118 1.02124 1.00131 1.83532 1.48273 1.25543 1.02279 0.93260 0.89224 0.93068 0.87297 0.93183 0.92703 0.89309 0.81705 0.92178 0.90431 1.01258 0.97513 0.92723 0.92217 0.91049 0.91334 0.94508 0.94119 0.90504 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.17 71.98 0.66 -1.58 16 2 C -0.02 -0.30 3.35 -11.54 -0.04 -0.33 16 3 C -0.13 -2.04 9.17 71.98 0.66 -1.38 16 4 C 0.04 1.02 5.91 88.52 0.52 1.54 16 5 N -0.49 -14.76 10.53 -191.46 -2.02 -16.78 16 6 C 0.04 1.20 11.25 83.65 0.94 2.14 16 7 C -0.20 -6.46 4.55 24.64 0.11 -6.34 16 8 C 0.12 4.28 5.05 85.56 0.43 4.71 16 9 N -0.53 -22.74 4.29 -880.04 -3.78 -26.52 16 10 C 0.21 11.04 4.64 85.56 0.40 11.44 16 11 C -0.52 -29.44 8.37 25.60 0.21 -29.23 16 12 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 13 C 0.00 0.27 5.46 84.66 0.46 0.73 16 14 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 15 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 C 0.08 2.88 2.68 44.92 0.12 3.00 16 20 C -0.15 -4.77 8.89 71.98 0.64 -4.13 16 21 C -0.17 -5.34 7.79 71.98 0.56 -4.78 16 22 S 0.15 3.60 18.80 -56.49 -1.06 2.53 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.11 1.36 8.12 -2.39 -0.02 1.35 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.17 5.51 8.06 -2.91 -0.02 5.49 16 31 H 0.06 2.02 5.24 -2.39 -0.01 2.01 16 32 H 0.08 2.89 7.64 -2.39 -0.02 2.87 16 33 H -0.03 -1.69 7.28 -2.39 -0.02 -1.71 16 34 H 0.01 0.38 7.68 -2.39 -0.02 0.37 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.06 2.62 6.97 -2.39 -0.02 2.60 16 37 H 0.07 2.12 3.13 -17.29 -0.05 2.07 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.04 1.42 7.11 -2.39 -0.02 1.40 16 41 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.06 1.80 5.17 -2.39 -0.01 1.79 16 Total: -1.00 -64.80 339.67 2.08 -62.72 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.94 Total: 11.06 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 5.68 Total: -24.21 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -5.51 Total: -98.96 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.06 Total: 2.53 kcal Total: -64.80 2.08 -62.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535786355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.141 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds