Wall clock time and date at job start Tue Mar 31 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47303 * 2 1 4 4 C 1.50698 * 109.47575 * 119.99816 * 2 1 3 5 5 C 1.33639 * 126.03802 * 119.99138 * 4 2 1 6 6 N 1.31788 * 114.49745 * 180.02562 * 5 4 2 7 7 C 1.29020 * 117.12621 * 0.02562 * 6 5 4 8 8 C 1.50695 * 124.91797 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47407 * 89.97201 * 8 7 6 10 10 C 1.46898 * 111.00183 * 170.00068 * 9 8 7 11 11 C 1.50702 * 109.47289 * 284.27993 * 10 9 8 12 12 H 1.08000 * 120.00111 * 4.01460 * 11 10 9 13 13 C 1.37884 * 119.99920 * 184.01275 * 11 10 9 14 14 N 1.31511 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99684 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47423 * 60.00043 * 15 13 11 17 17 H 1.48499 * 109.46972 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47454 * 300.00098 * 15 13 11 19 19 C 1.46903 * 111.00409 * 293.96006 * 9 8 7 20 20 C 1.52989 * 109.47305 * 170.84801 * 19 9 8 21 21 C 1.53005 * 109.46768 * 290.84858 * 19 9 8 22 22 S 1.70984 * 110.16618 * 359.72425 * 7 6 5 23 23 H 1.08998 * 109.47229 * 300.00246 * 1 2 3 24 24 H 1.09003 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47200 * 60.00338 * 1 2 3 26 26 H 1.09008 * 109.47231 * 240.00305 * 2 1 3 27 27 H 1.08998 * 109.47179 * 59.99724 * 3 2 1 28 28 H 1.09000 * 109.47414 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.46717 * 299.99958 * 3 2 1 30 30 H 1.08000 * 122.75324 * 0.02562 * 5 4 2 31 31 H 1.09000 * 109.47906 * 209.97434 * 8 7 6 32 32 H 1.09000 * 109.47151 * 329.97596 * 8 7 6 33 33 H 1.08996 * 109.47295 * 44.28507 * 10 9 8 34 34 H 1.09005 * 109.47067 * 164.27790 * 10 9 8 35 35 H 0.96996 * 119.99729 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.47026 * 50.84204 * 19 9 8 37 37 H 1.09006 * 109.47813 * 66.01931 * 20 19 9 38 38 H 1.09008 * 109.47022 * 186.01966 * 20 19 9 39 39 H 1.09003 * 109.47381 * 306.01752 * 20 19 9 40 40 H 1.08997 * 109.47436 * 59.99313 * 21 19 9 41 41 H 1.08999 * 109.47196 * 179.97438 * 21 19 9 42 42 H 1.09005 * 109.46543 * 299.99562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8038 -1.8015 1.2485 6 7 3.1096 -2.2346 2.4550 7 6 2.6387 -1.5700 3.4555 8 6 2.8766 -1.9084 4.9046 9 7 4.0852 -1.2193 5.3764 10 6 4.2195 -1.3310 6.8349 11 6 3.2459 -0.3941 7.5023 12 1 2.5482 0.1747 6.9055 13 6 3.2458 -0.2630 8.8749 14 7 4.0957 -0.9552 9.6016 15 14 2.0385 0.8978 9.7021 16 1 0.6503 0.4791 9.3816 17 1 2.2413 0.8573 11.1726 18 1 2.2645 2.2804 9.2097 19 6 5.2826 -1.7314 4.6966 20 6 6.4817 -0.8452 5.0391 21 6 5.5582 -3.1636 5.1592 22 16 1.7113 -0.2455 2.8993 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 3.1483 -2.2884 0.3481 31 1 2.0205 -1.5876 5.4981 32 1 3.0083 -2.9853 5.0093 33 1 4.0070 -2.3550 7.1420 34 1 5.2359 -1.0676 7.1274 35 1 4.0953 -0.8632 10.5672 36 1 5.1202 -1.7227 3.6189 37 1 6.7105 -0.9376 6.1008 38 1 7.3451 -1.1597 4.4527 39 1 6.2441 0.1931 4.8076 40 1 4.7038 -3.7950 4.9153 41 1 6.4463 -3.5438 4.6546 42 1 5.7205 -3.1723 6.2370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544349331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:52 Heat of formation + Delta-G solvation = 14.579625 kcal Electronic energy + Delta-G solvation = -20411.015803 eV Core-core repulsion = 17516.733684 eV Total energy + Delta-G solvation = -2894.282119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83564 -39.20981 -36.61121 -34.85182 -33.11629 -31.06372 -28.94589 -28.01856 -28.01402 -27.17273 -24.70274 -24.13392 -22.31306 -20.68197 -19.99423 -18.78361 -18.37461 -16.88601 -16.75961 -16.34365 -15.94635 -15.34914 -15.14388 -15.05011 -14.80005 -14.61183 -14.09718 -13.94569 -13.84588 -13.31423 -13.20752 -13.04891 -12.88959 -12.80674 -12.54540 -12.52051 -12.33201 -12.17310 -12.13131 -12.08174 -12.06287 -11.59977 -11.37025 -11.29384 -10.56787 -10.46120 -10.08812 -9.67042 -9.00742 -8.15163 -6.24463 -0.19976 0.47599 0.95546 1.43261 1.45669 1.53282 1.90875 2.43343 3.11429 3.20725 3.47036 3.78245 3.99533 4.03829 4.13857 4.24224 4.24582 4.43741 4.51894 4.56161 4.62700 4.71207 4.75497 4.78353 4.87643 4.90254 4.97136 5.02281 5.03153 5.11943 5.14618 5.31185 5.35221 5.36403 5.37127 5.38160 5.44423 5.70103 6.11086 6.34439 6.61812 6.86366 6.89920 7.44367 8.94763 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.005114 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.064586 B = 5474.154675 C = 6521.876361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.014 4.014 3 C -0.147 4.147 4 C -0.213 4.213 5 C 0.016 3.984 6 N -0.490 5.490 7 C 0.045 3.955 8 C 0.136 3.864 9 N -0.527 5.527 10 C 0.212 3.788 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.073 3.927 20 C -0.133 4.133 21 C -0.169 4.169 22 S 0.145 5.855 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.194 0.806 31 H 0.085 0.915 32 H 0.048 0.952 33 H -0.033 1.033 34 H 0.020 0.980 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 1.644 -20.111 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.334 4.334 5 C -0.134 4.134 6 N -0.206 5.206 7 C -0.232 4.232 8 C 0.005 3.995 9 N -0.252 5.252 10 C 0.086 3.914 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.573 5.573 15 Si 0.786 3.214 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.035 4.035 20 C -0.190 4.190 21 C -0.228 4.228 22 S 0.400 5.600 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.211 0.789 31 H 0.103 0.897 32 H 0.066 0.934 33 H -0.015 1.015 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.851 2.434 -19.395 20.140 hybrid contribution 0.105 -1.063 0.620 1.236 sum -4.746 1.371 -18.775 19.414 Atomic orbital electron populations 1.21922 0.93283 1.02343 1.02791 1.19741 0.96338 0.95607 0.91852 1.21932 1.01231 0.94528 1.02749 1.26444 1.06684 1.01928 0.98368 1.22038 0.99912 0.96095 0.95390 1.66307 1.23301 1.31897 0.99086 1.26711 1.00588 0.96744 0.99173 1.20406 0.95464 0.96968 0.86638 1.62305 1.00962 1.54785 1.07164 1.19398 0.96701 0.93503 0.81821 1.21453 1.18418 1.24511 0.91608 0.92179 1.25800 0.97685 0.97637 0.98042 1.70066 1.38199 1.42909 1.06111 0.85556 0.79390 0.79411 0.77011 1.19269 1.21014 1.19484 1.21741 0.90616 0.92626 0.98555 1.21760 0.96823 0.99552 1.00881 1.22285 1.01759 0.98016 1.00709 1.83971 1.48041 1.28714 0.99274 0.93372 0.92499 0.89820 0.87229 0.93482 0.92815 0.89743 0.78943 0.89719 0.93373 1.01499 0.96154 0.92808 0.90161 0.94154 0.90553 0.92975 0.93435 0.90824 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.14 71.98 0.66 -1.45 16 2 C -0.01 -0.23 3.32 -11.54 -0.04 -0.27 16 3 C -0.15 -2.28 9.13 71.98 0.66 -1.62 16 4 C -0.21 -5.00 5.15 24.64 0.13 -4.87 16 5 C 0.02 0.41 11.22 83.66 0.94 1.35 16 6 N -0.49 -16.08 9.51 -191.45 -1.82 -17.90 16 7 C 0.04 1.56 6.07 88.52 0.54 2.10 16 8 C 0.14 5.50 5.24 85.56 0.45 5.95 16 9 N -0.53 -23.16 4.37 -880.09 -3.85 -27.01 16 10 C 0.21 11.10 3.37 85.56 0.29 11.39 16 11 C -0.52 -29.22 8.60 25.60 0.22 -29.00 16 12 H 0.06 3.31 7.68 -2.91 -0.02 3.28 16 13 C 0.01 0.37 5.46 84.66 0.46 0.83 16 14 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 15 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.07 2.80 2.80 44.91 0.13 2.93 16 20 C -0.13 -4.80 9.00 71.98 0.65 -4.15 16 21 C -0.17 -6.18 8.54 71.98 0.61 -5.57 16 22 S 0.15 4.28 22.95 -56.49 -1.30 2.98 16 23 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.11 1.33 8.10 -2.38 -0.02 1.31 16 27 H 0.05 0.85 8.06 -2.39 -0.02 0.83 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.08 3.60 7.34 -2.39 -0.02 3.59 16 32 H 0.05 1.98 6.36 -2.39 -0.02 1.96 16 33 H -0.03 -1.86 7.32 -2.39 -0.02 -1.87 16 34 H 0.02 1.16 5.93 -2.38 -0.01 1.14 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.08 3.01 6.27 -2.39 -0.01 3.00 16 37 H 0.04 1.61 6.47 -2.38 -0.02 1.60 16 38 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.75 6.54 -2.39 -0.02 1.74 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.04 1.59 6.78 -2.38 -0.02 1.58 16 Total: -1.00 -63.52 346.32 2.02 -61.50 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.98 Total: 12.08 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 5.69 Total: -22.37 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -5.38 Total: -100.30 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.30 Total: 2.98 kcal Total: -63.52 2.02 -61.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544349331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.079 kcal (2) G-P(sol) polarization free energy of solvation -63.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds