Wall clock time and date at job start Tue Mar 31 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47488 * 2 1 4 4 C 1.50695 * 109.47461 * 179.97438 * 3 2 1 5 5 C 1.33637 * 122.75206 * 84.70538 * 4 3 2 6 6 S 1.76197 * 107.92822 * 179.97438 * 5 4 3 7 7 C 1.70979 * 90.28114 * 0.27470 * 6 5 4 8 8 C 1.50696 * 124.91779 * 179.84345 * 7 6 5 9 9 N 1.46902 * 109.46865 * 270.00240 * 8 7 6 10 10 C 1.46902 * 110.99961 * 170.00061 * 9 8 7 11 11 C 1.50705 * 109.46750 * 284.27455 * 10 9 8 12 12 H 1.07994 * 120.00194 * 4.01813 * 11 10 9 13 13 C 1.37884 * 119.99613 * 184.01220 * 11 10 9 14 14 N 1.31514 * 120.00183 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99762 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47002 * 59.99981 * 15 13 11 17 17 H 1.48498 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46975 * 300.00204 * 15 13 11 19 19 C 1.46902 * 110.99910 * 293.95095 * 9 8 7 20 20 C 1.53002 * 109.47098 * 170.85316 * 19 9 8 21 21 C 1.53002 * 109.47220 * 290.84953 * 19 9 8 22 22 N 1.29032 * 110.16649 * 359.84170 * 7 6 5 23 23 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46995 * 300.00097 * 1 2 3 25 25 H 1.08995 * 109.46950 * 60.00139 * 1 2 3 26 26 H 1.09007 * 109.47331 * 239.99870 * 2 1 3 27 27 H 1.09005 * 109.46661 * 120.00320 * 2 1 3 28 28 H 1.08995 * 109.46912 * 299.99884 * 3 2 1 29 29 H 1.09002 * 109.46503 * 59.99485 * 3 2 1 30 30 H 1.07999 * 126.03362 * 0.04216 * 5 4 3 31 31 H 1.08999 * 109.47252 * 29.99686 * 8 7 6 32 32 H 1.09000 * 109.47302 * 149.99902 * 8 7 6 33 33 H 1.08999 * 109.47234 * 44.27063 * 10 9 8 34 34 H 1.08999 * 109.47455 * 164.27500 * 10 9 8 35 35 H 0.96996 * 119.99763 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.46839 * 50.84884 * 19 9 8 37 37 H 1.09001 * 109.47065 * 66.01832 * 20 19 9 38 38 H 1.08992 * 109.46996 * 186.02121 * 20 19 9 39 39 H 1.09007 * 109.46842 * 306.01883 * 20 19 9 40 40 H 1.09001 * 109.47050 * 59.99948 * 21 19 9 41 41 H 1.08994 * 109.47100 * 179.97438 * 21 19 9 42 42 H 1.09002 * 109.47375 * 300.00170 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2705 1.3386 -1.1182 6 16 5.9736 1.3810 -0.6686 7 6 5.5436 1.5260 0.9798 8 6 6.5226 1.6250 2.1212 9 7 6.8392 0.2775 2.6129 10 6 7.9615 0.3130 3.5602 11 6 9.2515 0.5004 2.8039 12 1 9.2336 0.6497 1.7344 13 6 10.4545 0.4814 3.4774 14 7 10.4762 0.2992 4.7796 15 14 12.0534 0.7144 2.5400 16 1 12.0421 2.0360 1.8628 17 1 13.1957 0.6524 3.4867 18 1 12.1933 -0.3606 1.5250 19 6 5.6587 -0.3526 3.2189 20 6 5.9593 -1.8242 3.5107 21 6 5.3109 0.3654 4.5244 22 7 4.2595 1.5384 1.1051 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.8801 1.2462 -2.1209 31 1 7.4358 2.1095 1.7755 32 1 6.0827 2.2120 2.9274 33 1 7.8243 1.1413 4.2553 34 1 7.9985 -0.6245 4.1150 35 1 11.3225 0.2863 5.2534 36 1 4.8164 -0.2833 2.5306 37 1 6.7293 -1.8923 4.2791 38 1 5.0525 -2.3178 3.8601 39 1 6.3101 -2.3107 2.6005 40 1 5.0967 1.4137 4.3166 41 1 4.4346 -0.1019 4.9738 42 1 6.1532 0.2961 5.2128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573778755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:26 Heat of formation + Delta-G solvation = 29.642808 kcal Electronic energy + Delta-G solvation = -20395.750979 eV Core-core repulsion = 17502.122049 eV Total energy + Delta-G solvation = -2893.628930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.79349 -37.65364 -34.89844 -32.77768 -31.81089 -30.18362 -27.76912 -27.00611 -26.50534 -25.48785 -22.74679 -22.34351 -21.29228 -19.30762 -18.68181 -17.35919 -16.56715 -15.39590 -15.15651 -14.84631 -14.67409 -14.30596 -14.21476 -13.77193 -13.29466 -13.13407 -12.86993 -12.40840 -12.29018 -12.18180 -11.88890 -11.65100 -11.55157 -11.31374 -11.14199 -10.99873 -10.89943 -10.80420 -10.70409 -10.52913 -10.40512 -10.25092 -9.67088 -9.30108 -9.24898 -9.06602 -8.45938 -8.38494 -7.27290 -6.02075 -4.03513 0.99946 1.70455 2.11786 3.01485 3.33727 3.38130 3.40957 4.29117 4.43120 4.87828 4.90672 5.00240 5.04391 5.33220 5.33901 5.37552 5.47581 5.60647 5.62513 5.68481 5.74291 5.77308 5.86060 5.98275 6.03772 6.13162 6.17412 6.19819 6.22747 6.39619 6.45312 6.48708 6.55443 6.84851 6.88676 7.24341 7.35355 7.80520 8.04945 8.10563 8.17143 8.53473 9.03230 9.60543 11.08159 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.004635 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.743457 B = 6039.035577 C = 6901.461725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.042 4.042 4 C 0.070 3.930 5 C -0.285 4.285 6 S 0.138 5.862 7 C 0.085 3.915 8 C 0.128 3.872 9 N -0.522 5.522 10 C 0.192 3.808 11 C -0.508 4.508 12 H 0.061 0.939 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.073 3.927 20 C -0.138 4.138 21 C -0.179 4.179 22 N -0.479 5.479 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.101 0.899 32 H 0.057 0.943 33 H -0.006 1.006 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.574 1.189 -9.313 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.083 4.083 4 C -0.063 4.063 5 C -0.424 4.424 6 S 0.394 5.606 7 C -0.193 4.193 8 C -0.003 4.003 9 N -0.247 5.247 10 C 0.067 3.933 11 C -0.547 4.547 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.036 4.036 20 C -0.196 4.196 21 C -0.237 4.237 22 N -0.194 5.194 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.186 0.814 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.012 0.988 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.519 0.890 -9.569 17.411 hybrid contribution -0.187 0.566 0.229 0.638 sum -14.706 1.456 -9.341 17.482 Atomic orbital electron populations 1.21767 0.95632 1.01651 1.01739 1.21486 0.95533 0.95983 1.02575 1.20161 0.87453 0.97675 1.02966 1.20186 0.97535 1.01554 0.86986 1.26734 0.96169 1.15866 1.03673 1.84117 1.06022 1.66407 1.04027 1.27289 0.93590 0.99890 0.98568 1.20667 0.94744 0.93411 0.91457 1.62402 1.06038 1.16044 1.40251 1.19812 0.86485 0.97134 0.89835 1.21145 0.90278 1.48794 0.94496 0.92057 1.24958 0.99131 0.95480 0.94841 1.69938 1.26426 1.50251 1.07138 0.86607 0.82779 0.78748 0.79565 1.20265 1.21416 1.20168 1.21675 0.93594 0.94300 0.93990 1.21805 1.00472 0.95236 1.02091 1.22395 1.01282 1.00617 0.99440 1.66216 1.04651 1.17557 1.30984 0.92699 0.92619 0.92829 0.92008 0.91555 0.90728 0.90329 0.81450 0.88044 0.92509 0.98812 0.93915 0.92883 0.90814 0.92032 0.93691 0.92361 0.93028 0.93441 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 3 C -0.04 -0.46 5.63 -27.89 -0.16 -0.62 16 4 C 0.07 0.99 5.99 -84.23 -0.50 0.49 16 5 C -0.28 -3.73 11.14 29.12 0.32 -3.41 16 6 S 0.14 2.08 23.18 -107.50 -2.49 -0.41 16 7 C 0.08 1.47 6.07 -13.46 -0.08 1.39 16 8 C 0.13 2.48 5.24 -4.98 -0.03 2.45 16 9 N -0.52 -11.04 4.37 -229.51 -1.00 -12.04 16 10 C 0.19 4.79 3.37 -4.97 -0.02 4.77 16 11 C -0.51 -13.83 8.60 -34.44 -0.30 -14.12 16 12 H 0.06 1.65 7.68 -52.49 -0.40 1.24 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.07 1.38 2.80 -67.71 -0.19 1.20 16 20 C -0.14 -2.49 9.01 37.16 0.33 -2.16 16 21 C -0.18 -3.20 8.54 37.16 0.32 -2.88 16 22 N -0.48 -8.00 9.50 -8.06 -0.08 -8.08 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 2.03 7.34 -51.93 -0.38 1.65 16 32 H 0.06 1.10 6.36 -51.93 -0.33 0.77 16 33 H -0.01 -0.16 7.32 -51.93 -0.38 -0.54 16 34 H 0.04 1.14 5.93 -51.93 -0.31 0.84 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.39 6.27 -51.93 -0.33 1.07 16 37 H 0.06 1.20 6.47 -51.93 -0.34 0.86 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.92 6.54 -51.93 -0.34 0.58 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.22 6.78 -51.93 -0.35 0.86 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -28.84 347.34 -9.75 -38.59 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.94 Total: -0.61 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.18 Total: -13.59 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.34 Total: -45.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.49 Total: -0.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.84 -9.75 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573778755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.232 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds