Wall clock time and date at job start Tue Mar 31 2020 06:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47304 * 2 1 4 4 C 1.52994 * 109.46979 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46906 * 179.97438 * 4 3 2 6 6 N 1.29023 * 124.91761 * 90.00122 * 5 4 3 7 7 C 1.31780 * 117.12533 * 179.97438 * 6 5 4 8 8 C 1.50706 * 122.74660 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.47003 * 274.99684 * 8 7 6 10 10 C 1.46898 * 111.00028 * 174.89990 * 9 8 7 11 11 H 1.09000 * 109.46985 * 33.75490 * 10 9 8 12 12 C 1.50701 * 109.47222 * 153.74967 * 10 9 8 13 13 H 1.08001 * 119.99664 * 0.02562 * 12 10 9 14 14 C 1.37873 * 120.00205 * 180.02562 * 12 10 9 15 15 N 1.31519 * 120.00092 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00396 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47264 * 89.99645 * 16 14 12 18 18 H 1.48495 * 109.47616 * 210.00234 * 16 14 12 19 19 H 1.48501 * 109.47060 * 330.00296 * 16 14 12 20 20 C 1.52996 * 109.47769 * 273.75429 * 10 9 8 21 21 C 1.53007 * 109.46857 * 297.96487 * 20 10 9 22 22 C 1.33631 * 114.50172 * 0.23376 * 7 6 5 23 23 S 1.70979 * 124.91532 * 270.00210 * 5 4 3 24 24 H 1.08997 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47343 * 300.00145 * 1 2 3 26 26 H 1.09002 * 109.46876 * 59.99828 * 1 2 3 27 27 H 1.09000 * 109.47343 * 239.99855 * 2 1 3 28 28 H 1.09001 * 109.47459 * 119.99431 * 2 1 3 29 29 H 1.09000 * 109.47039 * 59.99668 * 3 2 1 30 30 H 1.08998 * 109.46631 * 299.99608 * 3 2 1 31 31 H 1.09000 * 109.47346 * 60.00052 * 4 3 2 32 32 H 1.08996 * 109.47842 * 299.99909 * 4 3 2 33 33 H 1.09005 * 109.46617 * 155.00141 * 8 7 6 34 34 H 1.08997 * 109.47280 * 34.99894 * 8 7 6 35 35 H 1.00898 * 111.00611 * 298.85780 * 9 8 7 36 36 H 0.96994 * 119.99904 * 179.97438 * 15 14 12 37 37 H 1.08992 * 109.47443 * 177.96390 * 20 10 9 38 38 H 1.09003 * 109.46931 * 57.95740 * 20 10 9 39 39 H 1.09004 * 109.46566 * 294.44524 * 21 20 10 40 40 H 1.08999 * 109.47009 * 174.44711 * 21 20 10 41 41 H 1.08995 * 109.47286 * 54.44409 * 21 20 10 42 42 H 1.08005 * 126.04398 * 179.76755 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3181 3.5602 1.0577 7 6 4.7539 4.7909 0.8784 8 6 5.0795 5.7153 2.0233 9 7 3.8540 6.3895 2.4720 10 6 4.1098 7.2076 3.6649 11 1 5.1177 7.6195 3.6137 12 6 3.1098 8.3334 3.7260 13 1 2.3590 8.4310 2.9558 14 6 3.1533 9.2386 4.7650 15 7 4.0679 9.1201 5.7026 16 14 1.9133 10.6336 4.8410 17 1 0.7181 10.1925 5.6039 18 1 2.5269 11.8052 5.5163 19 1 1.5090 11.0122 3.4632 20 6 3.9769 6.3390 4.9173 21 6 2.5476 5.8020 5.0162 22 6 4.8783 5.1539 -0.4016 23 16 4.3991 3.7851 -1.4024 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.8042 6.4600 1.6941 34 1 5.4996 5.1388 2.8475 35 1 3.4552 6.9459 1.7307 36 1 4.0988 9.7571 6.4333 37 1 4.2021 6.9373 5.8001 38 1 4.6752 5.5042 4.8563 39 1 1.8583 6.6311 5.1762 40 1 2.4782 5.1054 5.8517 41 1 2.2881 5.2871 4.0912 42 1 5.2144 6.1158 -0.7596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576237715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:45 Heat of formation + Delta-G solvation = 16.305436 kcal Electronic energy + Delta-G solvation = -19731.442244 eV Core-core repulsion = 16837.234963 eV Total energy + Delta-G solvation = -2894.207282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72870 -36.41393 -35.81425 -33.00867 -31.72821 -30.54457 -28.90197 -26.81068 -25.50469 -24.44384 -23.07285 -21.83056 -21.14547 -19.54107 -18.98025 -17.58602 -16.24970 -15.66011 -15.20209 -14.96021 -14.73317 -14.11761 -13.85251 -13.78417 -13.57351 -13.08614 -12.93869 -12.66423 -12.40252 -12.20434 -11.79242 -11.67238 -11.43339 -11.39907 -11.15228 -11.02271 -10.88273 -10.73175 -10.65263 -10.35172 -10.04516 -9.72805 -9.38858 -9.31158 -9.22260 -8.78696 -8.53520 -8.44543 -7.22750 -6.00771 -4.06074 0.88014 1.51246 1.87741 3.03656 3.30292 3.36978 3.39634 4.13085 4.41495 4.71389 4.78657 4.86209 5.12874 5.21265 5.30049 5.33591 5.45054 5.47532 5.50866 5.64538 5.69931 5.75843 5.79194 5.97441 6.05211 6.08433 6.18117 6.26487 6.44596 6.59643 6.78723 6.91862 7.30737 7.33621 7.54025 7.77950 7.81371 7.86762 8.03811 8.27785 8.39570 8.66706 9.02613 9.58457 11.05273 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.003780 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.786481 B = 7405.541483 C = 8087.540947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.040 4.040 5 C 0.051 3.949 6 N -0.448 5.448 7 C 0.095 3.905 8 C 0.130 3.870 9 N -0.676 5.676 10 C 0.218 3.782 11 H 0.001 0.999 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.259 4.259 23 S 0.082 5.918 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.330 0.670 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.011 0.989 39 H 0.050 0.950 40 H 0.012 0.988 41 H 0.047 0.953 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -14.887 -13.658 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.081 4.081 5 C -0.228 4.228 6 N -0.162 5.162 7 C -0.037 4.037 8 C -0.002 4.002 9 N -0.307 5.307 10 C 0.110 3.890 11 H 0.019 0.981 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.139 4.139 21 C -0.175 4.175 22 C -0.398 4.398 23 S 0.336 5.664 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.963 -15.743 -13.670 20.872 hybrid contribution 0.063 2.239 0.397 2.275 sum -0.900 -13.503 -13.273 18.956 Atomic orbital electron populations 1.21770 0.95715 1.01499 1.02113 1.21510 0.96076 0.96336 1.02057 1.21633 0.93212 0.97318 1.03249 1.20258 0.96231 0.87749 1.03893 1.27039 1.03497 1.01592 0.90662 1.66084 1.13161 1.06017 1.30913 1.20482 0.98050 0.91028 0.94155 1.20451 0.93276 0.93637 0.92836 1.60611 1.24617 1.36382 1.09118 1.19138 0.95317 0.89158 0.85354 0.98125 1.21165 1.15109 1.09628 1.09173 0.92352 1.24875 0.95684 0.97706 0.95540 1.69891 1.33848 1.36585 1.12390 0.86575 0.81453 0.81716 0.78125 1.20628 1.21330 1.20007 1.21411 0.94641 0.96525 1.01349 1.21421 0.98790 0.98897 0.98408 1.26806 1.13396 1.03850 0.95761 1.83719 1.62072 1.06756 1.13868 0.92822 0.92466 0.92763 0.92049 0.91722 0.90794 0.91763 0.90050 0.88877 0.94582 0.90012 0.85301 0.92961 0.89707 0.97049 0.93126 0.96920 0.93352 0.80914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.13 5.20 -26.73 -0.14 -1.27 16 4 C -0.04 -0.41 5.80 -27.88 -0.16 -0.57 16 5 C 0.05 0.70 6.64 -13.46 -0.09 0.61 16 6 N -0.45 -7.64 10.53 -8.06 -0.08 -7.73 16 7 C 0.09 1.61 6.30 -84.23 -0.53 1.08 16 8 C 0.13 2.47 5.89 -4.98 -0.03 2.44 16 9 N -0.68 -14.64 5.50 -109.22 -0.60 -15.24 16 10 C 0.22 5.45 2.30 -68.87 -0.16 5.29 16 11 H 0.00 0.03 7.84 -51.93 -0.41 -0.38 16 12 C -0.51 -13.79 7.33 -34.44 -0.25 -14.05 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.18 11.34 55.43 0.63 -24.56 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.10 -2.51 5.58 -26.73 -0.15 -2.66 16 21 C -0.12 -2.78 9.46 37.16 0.35 -2.43 16 22 C -0.26 -3.71 11.12 29.12 0.32 -3.39 16 23 S 0.08 0.99 23.18 -107.50 -2.49 -1.51 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 1.63 7.39 -51.93 -0.38 1.25 16 35 H 0.33 7.03 8.24 -39.29 -0.32 6.71 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.08 2.32 6.13 -51.93 -0.32 2.00 16 38 H 0.01 0.26 7.43 -51.93 -0.39 -0.13 16 39 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.05 1.13 7.50 -51.93 -0.39 0.74 16 42 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -29.06 353.56 -10.16 -39.21 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.20 Total: 3.53 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.72 Total: -15.25 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.06 Total: -47.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.06 -10.16 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576237715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.518 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds