Wall clock time and date at job start Tue Mar 31 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47099 * 2 1 4 4 C 1.52998 * 109.46786 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46900 * 179.97438 * 4 3 2 6 6 N 1.29025 * 124.91959 * 89.99535 * 5 4 3 7 7 C 1.31778 * 117.12735 * 180.02562 * 6 5 4 8 8 C 1.50700 * 122.74753 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47174 * 275.00097 * 8 7 6 10 10 C 1.46900 * 110.99932 * 176.11505 * 9 8 7 11 11 H 1.09006 * 109.47168 * 33.68070 * 10 9 8 12 12 C 1.50703 * 109.47245 * 273.67909 * 10 9 8 13 13 H 1.08002 * 119.99652 * 0.02562 * 12 10 9 14 14 C 1.37870 * 120.00235 * 179.97438 * 12 10 9 15 15 N 1.31513 * 119.99916 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00185 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47549 * 59.99874 * 16 14 12 18 18 H 1.48498 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46949 * 299.99999 * 16 14 12 20 20 C 1.53001 * 109.47072 * 153.67773 * 10 9 8 21 21 C 1.52996 * 109.47230 * 294.86417 * 20 10 9 22 22 C 1.33631 * 114.50206 * 0.02562 * 7 6 5 23 23 S 1.70982 * 124.91418 * 270.00218 * 5 4 3 24 24 H 1.09002 * 109.47147 * 60.00253 * 1 2 3 25 25 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46800 * 300.00520 * 1 2 3 27 27 H 1.08993 * 109.47320 * 239.99659 * 2 1 3 28 28 H 1.09002 * 109.47147 * 119.99747 * 2 1 3 29 29 H 1.08993 * 109.47313 * 59.99655 * 3 2 1 30 30 H 1.08999 * 109.46427 * 300.00027 * 3 2 1 31 31 H 1.09001 * 109.47257 * 60.00021 * 4 3 2 32 32 H 1.09002 * 109.47332 * 299.99668 * 4 3 2 33 33 H 1.09000 * 109.47362 * 35.00503 * 8 7 6 34 34 H 1.09002 * 109.47024 * 154.99842 * 8 7 6 35 35 H 1.00898 * 110.99987 * 300.06482 * 9 8 7 36 36 H 0.97007 * 120.00213 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46737 * 54.86693 * 20 10 9 38 38 H 1.09004 * 109.46984 * 174.85987 * 20 10 9 39 39 H 1.09007 * 109.46850 * 186.14178 * 21 20 10 40 40 H 1.08997 * 109.47248 * 306.13806 * 21 20 10 41 41 H 1.08997 * 109.46800 * 66.14472 * 21 20 10 42 42 H 1.08002 * 126.04313 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 7 4.3181 3.5603 1.0576 7 6 4.7529 4.7913 0.8784 8 6 5.0793 5.7154 2.0233 9 7 3.8539 6.3887 2.4738 10 6 4.1169 7.2291 3.6496 11 1 5.1217 7.6460 3.5808 12 6 4.0039 6.3943 4.8992 13 1 3.7614 5.3443 4.8270 14 6 4.2111 6.9707 6.1344 15 7 4.5079 8.2489 6.2221 16 14 4.0717 5.9358 7.6832 17 1 5.0633 4.8316 7.6318 18 1 4.3374 6.7853 8.8718 19 1 2.7028 5.3677 7.7775 20 6 3.0952 8.3668 3.7021 21 6 3.2952 9.2879 2.4970 22 6 4.8807 5.1531 -0.4016 23 16 4.3992 3.7852 -1.4025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.5009 5.1389 2.8467 34 1 5.8032 6.4606 1.6936 35 1 3.4431 6.9294 1.7275 36 1 4.6533 8.6545 7.0912 37 1 2.0877 7.9515 3.6789 38 1 3.2324 8.9361 4.6215 39 1 2.6424 10.1558 2.5908 40 1 4.3337 9.6167 2.4594 41 1 3.0517 8.7474 1.5823 42 1 5.2197 6.1140 -0.7596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576237716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:51 Heat of formation + Delta-G solvation = 16.911987 kcal Electronic energy + Delta-G solvation = -19667.052676 eV Core-core repulsion = 16772.871696 eV Total energy + Delta-G solvation = -2894.180980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69767 -36.43914 -35.82660 -32.90047 -31.79709 -30.86272 -28.90521 -26.83218 -25.58809 -24.63519 -22.65186 -21.68197 -21.08568 -19.61173 -19.43768 -17.40016 -16.23559 -15.63540 -15.19906 -14.98935 -14.69270 -14.36298 -13.93611 -13.73442 -13.46526 -13.23448 -12.81036 -12.53822 -12.36996 -12.35606 -12.13266 -11.52514 -11.39998 -11.36884 -11.19157 -11.11674 -10.84877 -10.73678 -10.70300 -10.59103 -9.91681 -9.73272 -9.62966 -9.32747 -9.20045 -9.08008 -8.50376 -8.30233 -7.21340 -5.92409 -3.95825 0.90215 1.53556 1.89738 3.07555 3.38973 3.42031 3.46979 4.16628 4.50110 4.74241 4.81392 4.88886 5.15542 5.23829 5.31688 5.37603 5.47630 5.49687 5.53747 5.66942 5.72066 5.77461 5.82268 5.99510 6.09490 6.12041 6.15178 6.16139 6.21142 6.35201 6.42569 6.59702 6.84343 7.07898 7.19058 7.48302 7.79308 7.97031 8.08361 8.30103 8.41683 8.77335 9.12848 9.69000 11.13086 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.004241 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.187585 B = 6599.967510 C = 7700.913061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.041 4.041 5 C 0.053 3.947 6 N -0.445 5.445 7 C 0.096 3.904 8 C 0.137 3.863 9 N -0.677 5.677 10 C 0.220 3.780 11 H 0.003 0.997 12 C -0.491 4.491 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.278 1.278 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.263 4.263 23 S 0.078 5.922 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.316 0.684 36 H 0.259 0.741 37 H 0.041 0.959 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.034 0.966 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -10.704 -16.206 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.082 4.082 5 C -0.226 4.226 6 N -0.159 5.159 7 C -0.036 4.036 8 C 0.005 3.995 9 N -0.308 5.308 10 C 0.114 3.886 11 H 0.021 0.979 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.164 4.164 21 C -0.208 4.208 22 C -0.402 4.402 23 S 0.332 5.668 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.119 0.881 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.553 -11.511 -16.232 20.063 hybrid contribution 0.637 0.993 1.094 1.609 sum -1.915 -10.518 -15.138 18.533 Atomic orbital electron populations 1.21771 0.95737 1.01489 1.02083 1.21512 0.96055 0.96353 1.02076 1.21631 0.93229 0.97317 1.03219 1.20267 0.96223 0.87763 1.03934 1.27071 1.03416 1.01599 0.90561 1.66101 1.13009 1.05985 1.30782 1.20559 0.97741 0.91101 0.94153 1.20396 0.92583 0.93597 0.92959 1.60631 1.25284 1.36097 1.08808 1.19176 0.93361 0.89129 0.86980 0.97944 1.21204 1.45765 0.96220 0.89836 0.91916 1.24944 0.95555 0.95016 0.98997 1.69863 1.49047 1.10635 1.24337 0.86599 0.78618 0.80066 0.82335 1.20395 1.21519 1.20326 1.21771 0.98890 0.97272 0.98454 1.21885 1.00253 0.99355 0.99262 1.26792 1.13767 1.03861 0.95758 1.83690 1.62168 1.06951 1.13994 0.92791 0.92830 0.92461 0.92058 0.91689 0.90764 0.91804 0.90050 0.88801 0.88987 0.94924 0.86669 0.93085 0.94014 0.88130 0.94339 0.93871 0.94696 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.11 -1.18 5.20 -26.73 -0.14 -1.32 16 4 C -0.04 -0.44 5.80 -27.88 -0.16 -0.60 16 5 C 0.05 0.75 6.64 -13.46 -0.09 0.66 16 6 N -0.45 -7.97 10.53 -8.06 -0.08 -8.05 16 7 C 0.10 1.70 6.29 -84.23 -0.53 1.17 16 8 C 0.14 2.72 5.89 -4.98 -0.03 2.69 16 9 N -0.68 -14.87 6.27 -109.21 -0.68 -15.56 16 10 C 0.22 5.54 2.03 -68.86 -0.14 5.41 16 11 H 0.00 0.08 7.83 -51.93 -0.41 -0.33 16 12 C -0.49 -13.84 8.62 -34.44 -0.30 -14.14 16 13 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 14 C 0.05 1.54 5.29 -17.82 -0.09 1.45 16 15 N -0.90 -25.75 11.30 55.43 0.63 -25.12 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.13 -2.98 5.35 -26.73 -0.14 -3.12 16 21 C -0.15 -2.91 9.63 37.16 0.36 -2.55 16 22 C -0.26 -3.81 11.11 29.12 0.32 -3.48 16 23 S 0.08 0.96 23.18 -107.50 -2.49 -1.54 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 2.04 7.99 -51.93 -0.41 1.63 16 34 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.32 6.38 6.60 -39.29 -0.26 6.12 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 39 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.61 6.65 -51.93 -0.35 0.26 16 42 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -29.90 354.81 -10.24 -40.14 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.20 Total: 3.72 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -0.73 Total: -15.88 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.14 Total: -48.74 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.90 -10.24 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576237716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds