Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99568 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00409 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47442 * 89.99373 * 8 6 4 10 10 H 1.48498 * 109.47152 * 209.99930 * 8 6 4 11 11 H 1.48506 * 109.46689 * 329.99562 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46499 * 109.47224 * 185.00039 * 16 13 12 18 18 C 1.39671 * 120.00191 * 180.02562 * 17 16 13 19 19 C 1.38954 * 120.05817 * 359.72790 * 18 17 16 20 20 C 1.38092 * 119.96918 * 179.70248 * 19 18 17 21 21 C 1.38274 * 120.10304 * 0.59226 * 20 19 18 22 22 C 1.38488 * 120.11991 * 359.68140 * 21 20 19 23 23 F 1.35097 * 119.98965 * 180.02562 * 22 21 20 24 24 C 1.38348 * 120.02729 * 0.02562 * 22 21 20 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99757 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 0.97006 * 119.99794 * 0.02562 * 17 16 13 37 37 H 1.08000 * 120.01169 * 359.97247 * 19 18 17 38 38 H 1.08005 * 119.94685 * 180.26953 * 20 19 18 39 39 H 1.07995 * 119.93669 * 179.70432 * 21 20 19 40 40 H 1.08006 * 120.05187 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 1.7141 3.9390 -2.6618 8 14 2.9995 4.2764 -0.2308 9 1 4.4520 4.0640 -0.4555 10 1 2.6912 5.7261 -0.3225 11 1 2.6288 3.7757 1.1172 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4928 -1.9723 1.9524 18 6 6.2454 -2.5871 2.9556 19 6 5.6305 -3.0062 4.1291 20 6 6.3753 -3.6193 5.1172 21 6 7.7346 -3.8061 4.9460 22 6 8.3526 -3.3849 3.7804 23 9 9.6807 -3.5692 3.6156 24 6 7.6103 -2.7754 2.7845 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 1.9886 4.8552 -2.8238 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 5.9236 -1.6765 1.1352 37 1 4.5698 -2.8563 4.2665 38 1 5.8962 -3.9488 6.0274 39 1 8.3153 -4.2817 5.7224 40 1 8.0918 -2.4472 1.8752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -60.632969 kcal Electronic energy + Delta-G solvation = -21514.294706 eV Core-core repulsion = 18050.537948 eV Total energy + Delta-G solvation = -3463.756758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.02618 -39.60422 -38.24108 -36.04305 -34.89448 -32.49499 -31.23218 -30.38353 -28.84200 -27.98841 -25.95613 -23.67630 -23.12127 -22.05937 -21.43698 -20.09926 -18.05509 -17.25606 -16.88008 -16.37585 -16.09906 -15.78385 -15.66709 -15.53129 -14.84764 -14.59280 -14.31532 -13.98102 -13.80675 -13.72234 -13.16343 -13.07888 -12.82937 -12.40802 -12.20482 -11.92235 -11.67257 -11.49939 -11.39751 -11.17280 -10.93278 -10.56605 -10.31563 -10.29129 -9.99946 -9.82430 -9.29541 -8.98560 -8.60069 -7.69074 -7.44435 -6.08258 -4.05588 1.05063 1.27997 3.10040 3.24287 3.31802 3.32244 3.52772 4.20975 4.35278 4.38134 4.56349 4.61418 4.90253 4.93163 4.98357 5.05230 5.19763 5.24101 5.25867 5.38507 5.42989 5.48327 5.76483 5.77771 5.92526 5.95641 6.05698 6.15393 6.17573 6.22555 6.57293 6.61587 6.76424 6.88992 7.07232 7.49466 7.53115 7.75926 7.88743 7.95012 8.61331 9.00899 9.52962 11.04994 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003363 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.678418 B = 8324.807832 C = 9006.748386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.522 5.522 3 C 0.161 3.839 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.101 3.899 14 H 0.108 0.892 15 O -0.538 6.538 16 C 0.091 3.909 17 N -0.732 5.732 18 C 0.250 3.750 19 C -0.212 4.212 20 C -0.043 4.043 21 C -0.221 4.221 22 C 0.145 3.855 23 F -0.142 7.142 24 C -0.237 4.237 25 H 0.079 0.921 26 H 0.013 0.987 27 H 0.046 0.954 28 H -0.013 1.013 29 H 0.023 0.977 30 H 0.264 0.736 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.367 0.633 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -15.663 15.597 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.246 5.246 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.104 4.104 13 C 0.041 3.959 14 H 0.126 0.874 15 O -0.342 6.342 16 C -0.034 4.034 17 N -0.360 5.360 18 C 0.144 3.856 19 C -0.235 4.235 20 C -0.062 4.062 21 C -0.242 4.242 22 C 0.125 3.875 23 F -0.121 7.121 24 C -0.261 4.261 25 H 0.097 0.903 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.005 0.995 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.244 0.756 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.419 -15.176 14.838 22.484 hybrid contribution 0.324 0.744 1.299 1.532 sum 7.742 -14.432 16.138 22.992 Atomic orbital electron populations 1.22225 0.87846 0.99006 1.01745 1.61868 1.07256 1.16496 1.38962 1.20250 0.94843 0.84005 0.97404 1.21001 1.35655 0.97115 1.00826 0.90094 1.24903 0.95797 0.97372 0.95261 1.69891 1.46854 1.13303 1.23786 0.86900 0.80979 0.79459 0.82632 1.20100 1.21100 1.19403 1.22664 0.95129 0.98885 0.93762 1.22160 0.95717 0.93799 0.84217 0.87406 1.86695 1.76368 1.30845 1.40274 1.22166 0.80956 1.00598 0.99707 1.44711 1.07325 1.64789 1.19168 1.17540 0.89666 0.89916 0.88519 1.20720 1.00631 1.07794 0.94362 1.20710 0.92663 0.94863 0.97949 1.20834 0.95986 1.09254 0.98173 1.17358 0.77102 0.98139 0.94868 1.91485 1.31549 1.93176 1.95844 1.20472 0.93187 1.10728 1.01684 0.90259 0.96808 0.93508 0.99492 0.95930 0.92629 0.94783 0.91272 0.78693 0.91269 0.91714 0.75596 0.85577 0.85279 0.85378 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.32 60.07 0.56 1.29 16 2 N -0.52 -10.32 4.66 -244.37 -1.14 -11.45 16 3 C 0.16 3.79 3.64 -4.97 -0.02 3.77 16 4 C -0.51 -14.30 9.14 -34.44 -0.31 -14.62 16 5 H 0.08 2.49 7.34 -52.49 -0.39 2.11 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 8 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.03 0.37 4.61 -3.83 -0.02 0.35 16 13 C 0.10 1.37 3.05 -26.73 -0.08 1.29 16 14 H 0.11 1.74 6.46 -51.93 -0.34 1.41 16 15 O -0.54 -7.71 13.23 -35.23 -0.47 -8.18 16 16 C 0.09 0.93 4.55 -4.04 -0.02 0.91 16 17 N -0.73 -7.92 5.68 -58.64 -0.33 -8.25 16 18 C 0.25 2.73 6.65 -83.80 -0.56 2.17 16 19 C -0.21 -2.06 9.31 -39.37 -0.37 -2.43 16 20 C -0.04 -0.38 10.04 -39.62 -0.40 -0.77 16 21 C -0.22 -2.14 10.02 -39.48 -0.40 -2.54 16 22 C 0.15 1.63 7.30 -39.45 -0.29 1.35 16 23 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 24 C -0.24 -2.65 9.87 -39.32 -0.39 -3.04 16 25 H 0.08 1.61 7.02 -51.93 -0.36 1.25 16 26 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 27 H 0.05 0.69 7.88 -51.93 -0.41 0.28 16 28 H -0.01 -0.30 7.13 -51.93 -0.37 -0.67 16 29 H 0.02 0.53 5.77 -51.93 -0.30 0.23 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 32 H 0.07 0.83 7.82 -51.93 -0.41 0.43 16 33 H 0.37 3.85 9.05 45.56 0.41 4.27 16 34 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 36 H 0.41 4.54 8.49 -40.82 -0.35 4.19 16 37 H 0.13 1.06 6.73 -52.49 -0.35 0.70 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -31.89 334.15 -8.09 -39.98 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.95 Total: 5.01 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.38 Total: -10.40 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.70 Total: -46.41 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.47 Total: -8.18 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.89 -8.09 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.650 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds