Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99568 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00409 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47442 * 89.99373 * 8 6 4 10 10 H 1.48498 * 109.47152 * 209.99930 * 8 6 4 11 11 H 1.48506 * 109.46689 * 329.99562 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46499 * 109.47224 * 185.00039 * 16 13 12 18 18 C 1.39671 * 120.00191 * 180.02562 * 17 16 13 19 19 C 1.38954 * 120.05817 * 359.72790 * 18 17 16 20 20 C 1.38092 * 119.96918 * 179.70248 * 19 18 17 21 21 C 1.38274 * 120.10304 * 0.59226 * 20 19 18 22 22 C 1.38488 * 120.11991 * 359.68140 * 21 20 19 23 23 F 1.35097 * 119.98965 * 180.02562 * 22 21 20 24 24 C 1.38348 * 120.02729 * 0.02562 * 22 21 20 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99757 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 0.97006 * 119.99794 * 0.02562 * 17 16 13 37 37 H 1.08000 * 120.01169 * 359.97247 * 19 18 17 38 38 H 1.08005 * 119.94685 * 180.26953 * 20 19 18 39 39 H 1.07995 * 119.93669 * 179.70432 * 21 20 19 40 40 H 1.08006 * 120.05187 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 1.7141 3.9390 -2.6618 8 14 2.9995 4.2764 -0.2308 9 1 4.4520 4.0640 -0.4555 10 1 2.6912 5.7261 -0.3225 11 1 2.6288 3.7757 1.1172 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4928 -1.9723 1.9524 18 6 6.2454 -2.5871 2.9556 19 6 5.6305 -3.0062 4.1291 20 6 6.3753 -3.6193 5.1172 21 6 7.7346 -3.8061 4.9460 22 6 8.3526 -3.3849 3.7804 23 9 9.6807 -3.5692 3.6156 24 6 7.6103 -2.7754 2.7845 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 1.9886 4.8552 -2.8238 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 5.9236 -1.6765 1.1352 37 1 4.5698 -2.8563 4.2665 38 1 5.8962 -3.9488 6.0274 39 1 8.3153 -4.2817 5.7224 40 1 8.0918 -2.4472 1.8752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578859619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -85.336429 kcal Electronic energy + Delta-G solvation = -21515.365928 eV Core-core repulsion = 18050.537948 eV Total energy + Delta-G solvation = -3464.827980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.87893 -40.40648 -39.36135 -37.36389 -35.79963 -34.60724 -32.11121 -31.27527 -30.19498 -29.46235 -27.07355 -25.20437 -24.01523 -23.16265 -22.28362 -21.63915 -19.09119 -18.82098 -18.04485 -17.27580 -17.10069 -16.75960 -16.57947 -16.42720 -16.36560 -16.06113 -15.42552 -15.25246 -14.92639 -14.58884 -14.48787 -14.44277 -14.02060 -13.87005 -13.27035 -13.10517 -12.94623 -12.66207 -12.62572 -12.40419 -12.27743 -12.15722 -11.88306 -11.70774 -11.46300 -11.05182 -10.87440 -10.79011 -9.75348 -8.96670 -8.45450 -8.29581 -6.32527 0.29119 0.53838 1.32063 1.33191 1.43190 2.27935 2.31954 2.78637 3.03375 3.17856 3.44168 3.61919 3.82327 3.93153 4.01959 4.19984 4.22864 4.25153 4.41354 4.52734 4.54889 4.58025 4.63187 4.70084 4.73910 4.89413 4.99951 5.07780 5.12875 5.21103 5.23070 5.32774 5.51768 5.54247 5.86573 5.97178 6.31172 6.36758 6.64714 6.67205 6.74522 6.99698 7.30812 8.87407 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003363 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.678418 B = 8324.807832 C = 9006.748386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.172 3.828 4 C -0.515 4.515 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.945 3.055 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.248 1.248 12 C 0.025 3.975 13 C 0.107 3.893 14 H 0.076 0.924 15 O -0.561 6.561 16 C 0.103 3.897 17 N -0.738 5.738 18 C 0.238 3.762 19 C -0.214 4.214 20 C -0.039 4.039 21 C -0.223 4.223 22 C 0.123 3.877 23 F -0.152 7.152 24 C -0.253 4.253 25 H 0.041 0.959 26 H 0.018 0.982 27 H 0.085 0.915 28 H -0.012 1.012 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.384 0.616 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.403 0.597 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.119 -17.005 18.911 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.045 3.955 4 C -0.553 4.553 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.769 3.231 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.171 1.171 12 C -0.103 4.103 13 C 0.047 3.953 14 H 0.094 0.906 15 O -0.367 6.367 16 C -0.021 4.021 17 N -0.365 5.365 18 C 0.133 3.867 19 C -0.236 4.236 20 C -0.057 4.057 21 C -0.244 4.244 22 C 0.104 3.896 23 F -0.131 7.131 24 C -0.277 4.277 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.005 0.995 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.233 0.767 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.238 0.762 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.450 -16.559 18.176 25.692 hybrid contribution 0.251 1.048 0.206 1.097 sum 7.701 -15.511 18.382 25.255 Atomic orbital electron populations 1.22184 0.87157 1.01200 0.99964 1.61710 1.08124 1.14541 1.42376 1.19966 0.95026 0.86050 0.94449 1.21294 1.34681 0.97381 1.01970 0.94625 1.25873 0.97083 0.98531 0.97677 1.70058 1.48756 1.13913 1.26337 0.85746 0.79326 0.77780 0.80283 1.19258 1.20703 1.17149 1.22805 0.95916 0.99560 0.92047 1.21984 0.94873 0.93044 0.85374 0.90619 1.86657 1.76922 1.31993 1.41169 1.22051 0.80549 1.01556 0.97972 1.44727 1.07595 1.65087 1.19103 1.17673 0.89521 0.90425 0.89112 1.21019 1.01643 1.07163 0.93817 1.21094 0.92145 0.93701 0.98764 1.21131 0.96770 1.08693 0.97817 1.17640 0.76891 0.99265 0.95840 1.91455 1.32255 1.93376 1.95985 1.20563 0.93796 1.11447 1.01870 0.93977 0.96314 0.89624 0.99464 0.95607 0.92482 0.93618 0.87799 0.76745 0.90265 0.89290 0.76201 0.83744 0.82094 0.83761 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.32 127.69 1.19 2.70 16 2 N -0.54 -20.83 4.66 -927.06 -4.32 -25.14 16 3 C 0.17 8.02 3.64 85.56 0.31 8.33 16 4 C -0.51 -29.88 9.14 25.60 0.23 -29.64 16 5 H 0.04 2.32 7.34 -2.92 -0.02 2.30 16 6 C 0.01 0.31 5.47 84.65 0.46 0.78 16 7 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 8 Si 0.95 43.97 27.47 68.60 1.88 45.85 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 12 C 0.03 0.66 4.61 86.30 0.40 1.06 16 13 C 0.11 2.67 3.05 30.59 0.09 2.76 16 14 H 0.08 2.38 6.46 -2.39 -0.02 2.37 16 15 O -0.56 -15.19 13.23 -148.98 -1.97 -17.16 16 16 C 0.10 1.78 4.55 86.38 0.39 2.17 16 17 N -0.74 -14.61 5.68 -339.44 -1.93 -16.53 16 18 C 0.24 4.76 6.65 38.21 0.25 5.02 16 19 C -0.21 -3.44 9.31 22.41 0.21 -3.23 16 20 C -0.04 -0.54 10.04 22.24 0.22 -0.32 16 21 C -0.22 -3.82 10.02 22.34 0.22 -3.59 16 22 C 0.12 2.68 7.30 22.36 0.16 2.84 16 23 F -0.15 -3.60 17.27 44.97 0.78 -2.82 16 24 C -0.25 -5.54 9.87 22.44 0.22 -5.31 16 25 H 0.04 1.76 7.02 -2.39 -0.02 1.74 16 26 H 0.02 0.62 8.07 -2.39 -0.02 0.61 16 27 H 0.09 2.30 7.88 -2.39 -0.02 2.29 16 28 H -0.01 -0.56 7.13 -2.39 -0.02 -0.58 16 29 H 0.03 1.19 5.77 -2.39 -0.01 1.18 16 30 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.05 1.12 8.05 -2.39 -0.02 1.10 16 32 H 0.10 2.01 7.82 -2.39 -0.02 1.99 16 33 H 0.38 7.10 9.05 -74.06 -0.67 6.43 16 34 H 0.08 1.24 7.94 -2.39 -0.02 1.22 16 35 H 0.09 1.13 7.96 -2.39 -0.02 1.11 16 36 H 0.40 8.71 8.49 -92.70 -0.79 7.92 16 37 H 0.14 1.75 6.73 -2.91 -0.02 1.73 16 38 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -71.89 334.15 -1.33 -73.22 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.45 Total: 18.70 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.38 Total: -16.44 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -5.94 Total: -101.35 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.97 Total: -17.16 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -71.89 -1.33 -73.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.117 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds