Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00127 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99936 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47026 * 89.99873 * 8 6 4 10 10 H 1.48501 * 109.47378 * 210.00120 * 8 6 4 11 11 H 1.48507 * 109.47052 * 330.00092 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39664 * 120.00402 * 179.97438 * 17 16 13 19 19 C 1.38957 * 120.06090 * 359.72293 * 18 17 16 20 20 C 1.38098 * 119.97211 * 179.70234 * 19 18 17 21 21 C 1.38267 * 120.09848 * 0.59761 * 20 19 18 22 22 C 1.38496 * 120.12584 * 359.67400 * 21 20 19 23 23 F 1.35096 * 119.98686 * 180.02562 * 22 21 20 24 24 C 1.38346 * 120.02180 * 0.03199 * 22 21 20 25 25 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 26 26 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 27 27 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 28 28 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 29 29 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 30 30 H 0.97003 * 119.99586 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 32 32 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 33 33 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 34 34 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 35 35 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 36 36 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 37 37 H 1.07994 * 120.01268 * 359.97438 * 19 18 17 38 38 H 1.07993 * 119.94726 * 180.27391 * 20 19 18 39 39 H 1.08004 * 119.93763 * 179.70435 * 21 20 19 40 40 H 1.07999 * 120.04567 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 1.7143 3.9389 2.6619 8 14 3.0020 4.2753 0.2320 9 1 2.0663 4.9798 -0.6809 10 1 3.8889 5.2663 0.8929 11 1 3.8256 3.3162 -0.5472 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1297 -2.9996 -2.7563 19 6 5.5391 -3.3399 -3.9672 20 6 6.2650 -4.0277 -4.9196 21 6 7.5752 -4.3892 -4.6655 22 6 8.1661 -4.0570 -3.4578 23 9 9.4466 -4.4111 -3.2126 24 6 7.4456 -3.3628 -2.5024 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3634 -1.0238 -0.0902 27 1 -0.3633 0.4336 0.9316 28 1 3.0797 1.3443 -0.1082 29 1 1.5611 1.9273 -0.8309 30 1 1.9896 4.8548 2.8241 31 1 1.3932 -1.6631 -1.2814 32 1 1.9552 -0.1531 -2.0381 33 1 2.9843 -2.8273 0.2042 34 1 3.4166 -2.8115 -2.2453 35 1 3.9751 -1.2717 -2.9419 36 1 5.8112 -2.0650 -0.9476 37 1 4.5143 -3.0628 -4.1651 38 1 5.8070 -4.2881 -5.8623 39 1 8.1390 -4.9312 -5.4104 40 1 7.9061 -3.1032 -1.5606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -60.946799 kcal Electronic energy + Delta-G solvation = -21487.822509 eV Core-core repulsion = 18024.052142 eV Total energy + Delta-G solvation = -3463.770366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.02893 -39.60401 -38.22495 -36.04958 -34.86670 -32.49450 -31.23517 -30.38576 -28.85221 -27.97542 -25.95743 -23.68384 -23.11205 -22.04139 -21.41234 -20.11534 -18.05548 -17.25171 -16.87269 -16.37603 -16.08480 -15.79575 -15.67324 -15.53270 -14.84319 -14.60571 -14.30291 -13.97261 -13.82626 -13.69591 -13.15202 -13.06463 -12.84762 -12.38354 -12.19750 -11.92113 -11.65816 -11.49761 -11.40369 -11.20028 -10.89284 -10.72617 -10.30871 -10.19690 -9.96203 -9.81528 -9.28640 -8.98711 -8.61048 -7.68941 -7.45299 -6.08140 -4.05442 1.04901 1.27905 3.09869 3.23915 3.32105 3.32458 3.52646 4.20767 4.36412 4.38228 4.57753 4.61391 4.90136 4.92971 4.98154 5.05394 5.20877 5.24309 5.26706 5.39651 5.42268 5.48346 5.76480 5.78060 5.92712 5.95571 6.05619 6.15758 6.17543 6.22509 6.58308 6.61652 6.75035 6.89025 7.07215 7.50274 7.54205 7.76509 7.89609 7.95341 8.61526 9.01052 9.53120 11.05144 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.003255 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.835203 B = 8601.142871 C = 9173.417924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.103 3.897 14 H 0.107 0.893 15 O -0.538 6.538 16 C 0.091 3.909 17 N -0.732 5.732 18 C 0.250 3.750 19 C -0.212 4.212 20 C -0.043 4.043 21 C -0.222 4.222 22 C 0.145 3.855 23 F -0.142 7.142 24 C -0.237 4.237 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.027 0.973 29 H -0.017 1.017 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.367 0.633 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.408 0.592 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 -16.294 -15.262 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.043 3.957 14 H 0.125 0.875 15 O -0.341 6.341 16 C -0.035 4.035 17 N -0.359 5.359 18 C 0.144 3.856 19 C -0.235 4.235 20 C -0.062 4.062 21 C -0.243 4.243 22 C 0.125 3.875 23 F -0.121 7.121 24 C -0.261 4.261 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.000 1.000 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.213 0.787 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.245 0.755 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.283 -15.800 -14.513 22.657 hybrid contribution 0.265 0.723 -1.294 1.506 sum 7.548 -15.077 -15.807 23.112 Atomic orbital electron populations 1.22238 0.87889 0.99013 1.01712 1.61858 1.07210 1.16452 1.38966 1.20253 0.95139 0.83937 0.97123 1.21006 1.35547 0.97137 1.00901 0.90096 1.24904 0.95763 0.97378 0.95308 1.69888 1.46820 1.13267 1.23870 0.86878 0.80643 0.80101 0.82168 1.20354 1.21055 1.19358 1.22666 0.95388 0.98709 0.93743 1.22126 0.96180 0.93410 0.84031 0.87550 1.86686 1.74206 1.34674 1.38530 1.22155 0.82398 0.99422 0.99500 1.44689 1.12406 1.60681 1.18169 1.17539 0.89738 0.89383 0.88973 1.20723 1.01308 1.07464 0.94035 1.20708 0.92781 0.94423 0.98266 1.20836 0.97173 1.08924 0.97334 1.17358 0.78680 0.96954 0.94477 1.91485 1.35933 1.89930 1.94709 1.20467 0.94691 1.09172 1.01747 0.96839 0.93516 0.90259 0.95506 0.99967 0.92631 0.91362 0.94659 0.78699 0.91765 0.91281 0.75532 0.85580 0.85285 0.85384 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.31 60.07 0.56 1.28 16 2 N -0.52 -10.28 4.59 -244.37 -1.12 -11.40 16 3 C 0.16 3.81 3.62 -4.98 -0.02 3.79 16 4 C -0.51 -14.30 9.13 -34.44 -0.31 -14.61 16 5 H 0.08 2.49 7.34 -52.49 -0.39 2.11 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 8 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 12 C 0.02 0.36 4.65 -3.82 -0.02 0.35 16 13 C 0.10 1.38 3.13 -26.74 -0.08 1.30 16 14 H 0.11 1.72 6.73 -51.93 -0.35 1.37 16 15 O -0.54 -7.69 12.98 -35.23 -0.46 -8.15 16 16 C 0.09 0.92 4.58 -4.04 -0.02 0.90 16 17 N -0.73 -7.83 5.62 -58.64 -0.33 -8.16 16 18 C 0.25 2.71 6.65 -83.80 -0.56 2.15 16 19 C -0.21 -2.05 9.31 -39.37 -0.37 -2.42 16 20 C -0.04 -0.37 10.04 -39.62 -0.40 -0.77 16 21 C -0.22 -2.13 10.02 -39.48 -0.40 -2.53 16 22 C 0.15 1.62 7.30 -39.45 -0.29 1.33 16 23 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 24 C -0.24 -2.63 9.87 -39.32 -0.39 -3.02 16 25 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 26 H 0.05 0.69 7.85 -51.92 -0.41 0.28 16 27 H 0.08 1.61 7.01 -51.93 -0.36 1.25 16 28 H 0.03 0.64 5.66 -51.93 -0.29 0.35 16 29 H -0.02 -0.41 7.50 -51.93 -0.39 -0.80 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 32 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 33 H 0.37 3.90 9.05 45.56 0.41 4.31 16 34 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 35 H 0.07 0.68 7.96 -51.93 -0.41 0.27 16 36 H 0.41 4.51 8.36 -40.82 -0.34 4.17 16 37 H 0.13 1.05 6.73 -52.49 -0.35 0.70 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -31.75 334.15 -8.08 -39.83 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.97 Total: 4.94 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.38 Total: -10.39 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.68 Total: -46.27 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.46 Total: -8.15 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.75 -8.08 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.114 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds