Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47073 * 2 1 4 4 C 1.50702 * 109.46859 * 119.99703 * 2 1 3 5 5 C 1.34379 * 126.52339 * 324.97266 * 4 2 1 6 6 N 1.34368 * 108.34844 * 180.02562 * 5 4 2 7 7 C 1.31274 * 109.30212 * 359.97438 * 6 5 4 8 8 S 1.76191 * 125.80157 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00133 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47438 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47036 * 299.99901 * 10 9 8 12 12 C 1.53004 * 109.47358 * 59.99428 * 10 9 8 13 13 C 1.50694 * 109.47385 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00279 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00084 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00049 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99814 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47357 * 59.99557 * 17 15 13 19 19 H 1.48499 * 109.47017 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47176 * 299.99286 * 17 15 13 21 21 N 1.36114 * 108.39323 * 0.02562 * 7 6 5 22 22 C 1.46501 * 126.49745 * 180.25716 * 21 7 6 23 23 H 1.09005 * 109.47500 * 300.00321 * 1 2 3 24 24 H 1.09000 * 109.47571 * 60.00188 * 1 2 3 25 25 H 1.09004 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47172 * 239.99637 * 2 1 3 27 27 H 1.09008 * 109.46991 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46696 * 299.99525 * 3 2 1 29 29 H 1.08993 * 109.47418 * 59.99788 * 3 2 1 30 30 H 1.08001 * 125.82729 * 0.02562 * 5 4 2 31 31 H 1.09001 * 109.47095 * 299.99941 * 9 8 7 32 32 H 1.08998 * 109.47251 * 59.99466 * 9 8 7 33 33 H 1.09003 * 109.47250 * 59.99705 * 11 10 9 34 34 H 1.08996 * 109.47256 * 180.02562 * 11 10 9 35 35 H 1.09006 * 109.46955 * 300.00030 * 11 10 9 36 36 H 1.09001 * 109.46689 * 60.00467 * 12 10 9 37 37 H 1.08996 * 109.47190 * 180.02562 * 12 10 9 38 38 H 1.08994 * 109.47583 * 300.00603 * 12 10 9 39 39 H 0.96996 * 119.99568 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.47405 * 269.68165 * 22 21 7 41 41 H 1.08997 * 109.47231 * 29.69068 * 22 21 7 42 42 H 1.09006 * 109.46911 * 149.68400 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.4651 -0.6979 2.4487 6 7 2.2144 -1.4504 3.2719 7 6 3.2363 -1.9360 2.6061 8 16 4.4930 -2.9806 3.2647 9 6 3.9240 -3.1154 4.9776 10 6 4.8888 -4.0023 5.7673 11 6 4.9357 -5.3945 5.1344 12 6 6.2878 -3.3832 5.7417 13 6 4.4147 -4.1151 7.1932 14 1 3.5155 -3.6049 7.5053 15 6 5.1296 -4.8688 8.0998 16 7 6.2249 -5.4898 7.7200 17 14 4.5423 -5.0080 9.8676 18 1 3.1847 -5.6094 9.8924 19 1 5.4786 -5.8689 10.6340 20 1 4.4963 -3.6568 10.4818 21 7 3.1597 -1.4954 1.3205 22 6 4.0960 -1.8035 0.2366 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 0.5611 -0.1727 2.7198 31 1 3.8911 -2.1237 5.4287 32 1 2.9273 -3.5561 4.9958 33 1 5.2784 -5.3134 4.1028 34 1 5.6227 -6.0265 5.6972 35 1 3.9391 -5.8356 5.1525 36 1 6.2544 -2.3914 6.1926 37 1 6.9751 -4.0153 6.3039 38 1 6.6304 -3.3020 4.7102 39 1 6.7276 -6.0203 8.3578 40 1 4.8851 -1.0521 0.2135 41 1 4.5353 -2.7868 0.4045 42 1 3.5639 -1.8010 -0.7148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582976819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = 35.734672 kcal Electronic energy + Delta-G solvation = -20124.270896 eV Core-core repulsion = 17230.906129 eV Total energy + Delta-G solvation = -2893.364767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69622 -35.95619 -35.65500 -33.82319 -31.49062 -28.69956 -27.38220 -26.86627 -26.10545 -25.64503 -25.08567 -22.79274 -21.45182 -19.41063 -18.87090 -17.25364 -15.96573 -15.87359 -15.60608 -14.68244 -14.43707 -14.36278 -13.78818 -13.62793 -13.28707 -13.26809 -12.79462 -12.70106 -12.65681 -12.35675 -12.10304 -11.63813 -11.44879 -11.34198 -11.20700 -11.16452 -10.80339 -10.71232 -10.27760 -10.20946 -9.93083 -9.69588 -9.54385 -9.39602 -9.37340 -8.83122 -8.63614 -8.33112 -6.82789 -5.96798 -4.07182 1.82020 2.08900 2.91570 3.14686 3.30690 3.33761 3.37722 3.42166 4.44347 4.47053 4.65041 4.71094 4.91242 5.08351 5.19303 5.28924 5.29487 5.38310 5.40357 5.54737 5.62347 5.66773 5.82846 6.00996 6.01290 6.15350 6.23665 6.47832 6.62449 6.88038 6.92231 6.96063 7.08784 7.09384 7.11173 7.40134 7.62838 7.75314 8.06607 8.18396 8.19558 8.43348 8.92091 9.57827 11.04455 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.003765 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.834533 B = 7434.819241 C = 7921.376994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.029 4.029 5 C -0.014 4.014 6 N -0.489 5.489 7 C 0.199 3.801 8 S -0.046 6.046 9 C -0.057 4.057 10 C 0.079 3.921 11 C -0.134 4.134 12 C -0.134 4.134 13 C -0.503 4.503 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 N -0.451 5.451 22 C 0.074 3.926 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.164 0.836 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.016 0.984 34 H 0.086 0.914 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 9.091 -16.979 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.164 4.164 6 N -0.211 5.211 7 C -0.170 4.170 8 S 0.186 5.814 9 C -0.206 4.206 10 C 0.077 3.923 11 C -0.192 4.192 12 C -0.192 4.192 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 N -0.137 5.137 22 C -0.069 4.069 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.640 8.312 -16.716 19.236 hybrid contribution -1.274 0.671 0.668 1.587 sum -5.915 8.982 -16.048 19.318 Atomic orbital electron populations 1.21795 0.93524 1.02336 1.02159 1.19469 0.96097 0.94954 0.92827 1.21838 1.01012 0.94985 1.02106 1.21161 0.91640 1.02992 0.98711 1.21957 1.01589 1.03359 0.89466 1.70867 1.04461 1.14098 1.31634 1.25790 1.02419 1.05174 0.83592 1.85491 1.26658 1.55294 1.13959 1.23992 1.03613 1.04758 0.88208 1.18065 0.90551 0.90411 0.93311 1.21899 1.00754 0.99930 0.96610 1.21896 0.99913 0.99805 0.97579 1.20983 1.09954 1.30355 0.93008 0.92445 1.24877 0.94825 0.95211 0.98540 1.69805 1.16034 1.32048 1.34564 0.86622 0.78554 0.78046 0.84569 1.20271 1.21322 1.20267 1.45307 1.20904 1.38360 1.09129 1.21991 0.92717 1.03193 0.88977 0.91945 0.92156 0.92309 0.91048 0.92914 0.92235 0.92045 0.81829 0.90258 0.90263 0.96559 0.89531 0.95321 0.95320 0.89533 0.96549 0.92932 0.90604 0.89126 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.78 37.16 0.33 -0.81 16 2 C -0.01 -0.13 3.16 -91.77 -0.29 -0.42 16 3 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 4 C -0.03 -0.39 5.89 -81.32 -0.48 -0.87 16 5 C -0.01 -0.21 11.04 -17.80 -0.20 -0.41 16 6 N -0.49 -9.53 10.60 -13.45 -0.14 -9.67 16 7 C 0.20 3.66 7.96 -88.74 -0.71 2.95 16 8 S -0.05 -0.87 18.67 -107.50 -2.01 -2.87 16 9 C -0.06 -1.27 4.14 37.16 0.15 -1.12 16 10 C 0.08 1.92 0.52 -155.66 -0.08 1.84 16 11 C -0.13 -3.20 8.01 37.16 0.30 -2.91 16 12 C -0.13 -3.21 8.01 37.16 0.30 -2.91 16 13 C -0.50 -13.55 8.01 -34.44 -0.28 -13.83 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 16 N -0.89 -24.19 9.35 55.43 0.52 -23.67 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 N -0.45 -6.66 3.20 -119.72 -0.38 -7.04 16 22 C 0.07 0.78 10.83 59.85 0.65 1.42 16 23 H 0.06 0.50 7.30 -51.93 -0.38 0.12 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.60 7.12 -51.93 -0.37 0.23 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.16 2.17 7.38 -52.49 -0.39 1.78 16 31 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 32 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 33 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 34 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 38 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.96 7.73 -51.93 -0.40 0.55 16 42 H 0.08 0.65 7.15 -51.93 -0.37 0.28 16 LS Contribution 343.48 15.07 5.18 5.18 Total: -1.00 -29.59 343.48 -8.94 -38.53 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.03 Total: -0.32 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -0.06 Total: -16.20 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.01 Total: -40.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.01 Total: -2.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.59 -8.94 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582976819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.269 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds