Wall clock time and date at job start Tue Mar 31 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29022 * 124.91373 * 2 1 4 4 C 1.31789 * 117.12256 * 180.26689 * 3 2 1 5 5 C 1.33637 * 114.50004 * 359.97438 * 4 3 2 6 6 C 1.50693 * 126.03703 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47706 * 19.98078 * 6 5 4 8 8 C 1.53006 * 109.47179 * 259.98547 * 6 5 4 9 9 N 1.46898 * 109.47231 * 139.98489 * 6 5 4 10 10 C 1.46906 * 110.99837 * 204.99866 * 9 6 5 11 11 C 1.52999 * 109.46774 * 179.97438 * 10 9 6 12 12 C 1.52997 * 109.47347 * 300.00089 * 11 10 9 13 13 C 1.52995 * 109.47369 * 60.00155 * 11 10 9 14 14 C 1.52999 * 109.47226 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47618 * 180.02562 * 14 11 10 16 16 H 1.08000 * 119.99918 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00215 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99919 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00025 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46988 * 90.00404 * 19 17 15 21 21 H 1.48500 * 109.46928 * 210.00613 * 19 17 15 22 22 H 1.48500 * 109.47127 * 330.00550 * 19 17 15 23 23 S 1.70978 * 124.91683 * 180.30364 * 2 1 3 24 24 H 1.09008 * 109.46991 * 269.69540 * 1 2 3 25 25 H 1.08996 * 109.47312 * 29.69288 * 1 2 3 26 26 H 1.08995 * 109.47364 * 149.70024 * 1 2 3 27 27 H 1.08002 * 122.74893 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46773 * 299.99731 * 8 6 5 29 29 H 1.08998 * 109.46926 * 59.99977 * 8 6 5 30 30 H 1.08999 * 109.46971 * 180.02562 * 8 6 5 31 31 H 1.00893 * 110.99994 * 328.95121 * 9 6 5 32 32 H 1.08996 * 109.47480 * 299.99735 * 10 9 6 33 33 H 1.09000 * 109.47190 * 60.00401 * 10 9 6 34 34 H 1.08997 * 109.47215 * 59.99992 * 12 11 10 35 35 H 1.09000 * 109.47492 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47368 * 299.99890 * 12 11 10 37 37 H 1.09004 * 109.47161 * 59.99692 * 13 11 10 38 38 H 1.09004 * 109.47888 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.47360 * 300.00010 * 13 11 10 40 40 H 1.09008 * 109.47142 * 300.00383 * 14 11 10 41 41 H 1.09002 * 109.47251 * 59.99611 * 14 11 10 42 42 H 0.97002 * 120.00384 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0055 5 6 3.9354 -0.4006 -0.0098 6 6 5.3574 -0.8993 -0.0159 7 1 6.0212 -0.1091 0.3348 8 6 5.7507 -1.3015 -1.4388 9 7 5.4715 -2.0644 0.8715 10 6 6.8472 -2.2191 1.3630 11 6 6.9261 -3.4396 2.2822 12 6 5.9793 -3.2467 3.4685 13 6 6.5190 -4.6920 1.5033 14 6 8.3587 -3.6004 2.7947 15 6 8.4366 -4.8029 3.6996 16 1 7.5526 -5.3932 3.8906 17 6 9.6362 -5.1489 4.2847 18 7 9.7040 -6.1980 5.0748 19 14 11.1651 -4.1276 3.9550 20 1 11.2668 -3.0473 4.9689 21 1 12.3671 -4.9959 4.0346 22 1 11.0767 -3.5275 2.5995 23 16 2.4857 -1.4020 -0.0074 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3634 0.8927 -0.5090 26 1 -0.3634 -0.8872 -0.5184 27 1 4.2532 1.7001 -0.0056 28 1 5.0870 -2.0918 -1.7895 29 1 5.6661 -0.4370 -2.0972 30 1 6.7791 -1.6627 -1.4430 31 1 4.8187 -2.0003 1.6381 32 1 7.5217 -2.3562 0.5179 33 1 7.1371 -1.3271 1.9184 34 1 4.9586 -3.1319 3.1039 35 1 6.0358 -4.1160 4.1237 36 1 6.2694 -2.3545 4.0236 37 1 7.1934 -4.8294 0.6582 38 1 6.5756 -5.5616 2.1581 39 1 5.4982 -4.5772 1.1386 40 1 9.0336 -3.7377 1.9497 41 1 8.6484 -2.7082 3.3497 42 1 10.5480 -6.4418 5.4861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588232191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:22 Heat of formation + Delta-G solvation = 23.754584 kcal Electronic energy + Delta-G solvation = -20054.376638 eV Core-core repulsion = 17160.492376 eV Total energy + Delta-G solvation = -2893.884263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91109 -38.06649 -35.63360 -32.59292 -31.92979 -30.09145 -27.82564 -27.53212 -26.39565 -25.45350 -24.06741 -22.44547 -21.25235 -19.64848 -18.10336 -17.80218 -16.81145 -15.84360 -15.45359 -15.18951 -14.53689 -14.26623 -14.03909 -13.62310 -13.53022 -13.34150 -13.02671 -12.68470 -12.61582 -12.36762 -12.19418 -12.10687 -11.86223 -11.55368 -11.33266 -11.03503 -10.96537 -10.82788 -10.50935 -10.35179 -9.83649 -9.76132 -9.68766 -9.41537 -9.27675 -8.94884 -8.86358 -8.50400 -8.31430 -6.00599 -3.96837 0.53810 1.19213 1.66296 2.65530 3.31314 3.39301 3.42432 3.96303 4.22023 4.47594 4.57936 4.83410 5.12821 5.14850 5.17066 5.23077 5.32366 5.40810 5.53457 5.55303 5.63658 5.69888 5.80316 5.84697 6.00317 6.12137 6.15978 6.22114 6.39749 6.57267 6.66456 6.78376 7.04425 7.10479 7.14980 7.23156 7.30864 7.42041 7.51260 7.58506 7.84476 8.59048 9.05317 9.62475 11.12523 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032917 B = 0.003502 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.408242 B = 7992.905859 C = 8306.657893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.024 3.976 3 N -0.477 5.477 4 C 0.033 3.967 5 C -0.221 4.221 6 C 0.158 3.842 7 H 0.062 0.938 8 C -0.135 4.135 9 N -0.680 5.680 10 C 0.067 3.933 11 C -0.048 4.048 12 C -0.131 4.131 13 C -0.117 4.117 14 C -0.004 4.004 15 C -0.507 4.507 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.267 1.267 23 S 0.164 5.836 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.172 0.828 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.342 0.658 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.008 0.992 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.374 12.205 -12.237 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.253 4.253 3 N -0.192 5.192 4 C -0.118 4.118 5 C -0.343 4.343 6 C 0.046 3.954 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.313 5.313 10 C -0.062 4.062 11 C -0.049 4.049 12 C -0.189 4.189 13 C -0.174 4.174 14 C -0.042 4.042 15 C -0.545 4.545 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.191 1.191 23 S 0.419 5.581 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.189 0.811 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.666 11.103 -12.644 22.991 hybrid contribution 1.751 2.043 0.633 2.764 sum -13.915 13.146 -12.011 22.599 Atomic orbital electron populations 1.20409 0.85410 1.04012 1.03816 1.27120 1.01934 0.92041 1.04238 1.66286 1.04740 1.31946 1.16201 1.21661 0.91164 0.95726 1.03272 1.26196 1.00171 0.96392 1.11510 1.19929 0.87550 0.92176 0.95737 0.92063 1.21811 1.02309 1.01235 0.93935 1.60774 1.07991 1.39177 1.23353 1.22218 0.88103 0.97861 0.97971 1.20417 0.97750 0.93164 0.93532 1.21789 0.96637 1.02203 0.98226 1.21610 0.99270 0.97549 0.99021 1.19625 0.91253 0.97140 0.96141 1.21130 0.96686 1.10321 1.26362 0.90412 1.25014 0.98748 0.94930 0.94884 1.69906 1.26189 1.26453 1.31961 0.86851 0.83184 0.80428 0.79218 1.20530 1.21549 1.19129 1.84213 0.96267 1.10647 1.67010 0.89692 0.89526 0.90161 0.81145 0.91835 0.92685 0.91655 0.83804 0.91227 0.95643 0.94678 0.91051 0.94161 0.94188 0.92097 0.93676 0.96690 0.97418 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.01 0.38 -0.14 16 2 C 0.02 0.25 7.39 -13.46 -0.10 0.15 16 3 N -0.48 -5.83 10.54 -11.86 -0.13 -5.95 16 4 C 0.03 0.38 11.24 -19.18 -0.22 0.17 16 5 C -0.22 -2.50 5.20 -35.92 -0.19 -2.68 16 6 C 0.16 1.83 3.07 -68.87 -0.21 1.62 16 7 H 0.06 0.70 7.79 -51.93 -0.40 0.29 16 8 C -0.13 -1.45 9.40 37.16 0.35 -1.10 16 9 N -0.68 -9.13 5.36 -107.95 -0.58 -9.71 16 10 C 0.07 1.05 4.45 -3.82 -0.02 1.03 16 11 C -0.05 -0.91 0.60 -154.51 -0.09 -1.00 16 12 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 13 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 14 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 15 C -0.51 -13.87 8.20 -34.44 -0.28 -14.15 16 16 H 0.08 2.27 5.92 -52.49 -0.31 1.96 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.67 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 S 0.16 1.71 22.82 -107.50 -2.45 -0.74 16 24 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 31 H 0.34 4.65 6.23 -39.30 -0.24 4.41 16 32 H 0.07 1.09 7.43 -51.93 -0.39 0.71 16 33 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 35 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.04 0.76 7.60 -51.92 -0.39 0.36 16 40 H 0.01 0.35 7.20 -51.92 -0.37 -0.02 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -30.39 343.87 -8.73 -39.12 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.89 Total: 0.52 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 0.03 Total: -18.51 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.07 Total: -42.55 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.45 Total: -0.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.39 -8.73 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588232191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.875 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds