Wall clock time and date at job start Tue Mar 31 2020 06:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29022 * 124.91373 * 2 1 4 4 C 1.31789 * 117.12256 * 180.26689 * 3 2 1 5 5 C 1.33637 * 114.50004 * 359.97438 * 4 3 2 6 6 C 1.50693 * 126.03703 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47706 * 19.98078 * 6 5 4 8 8 C 1.53006 * 109.47179 * 259.98547 * 6 5 4 9 9 N 1.46898 * 109.47231 * 139.98489 * 6 5 4 10 10 C 1.46906 * 110.99837 * 204.99866 * 9 6 5 11 11 C 1.52999 * 109.46774 * 179.97438 * 10 9 6 12 12 C 1.52997 * 109.47347 * 300.00089 * 11 10 9 13 13 C 1.52995 * 109.47369 * 60.00155 * 11 10 9 14 14 C 1.52999 * 109.47226 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47618 * 180.02562 * 14 11 10 16 16 H 1.08000 * 119.99918 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00215 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99919 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00025 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46988 * 90.00404 * 19 17 15 21 21 H 1.48500 * 109.46928 * 210.00613 * 19 17 15 22 22 H 1.48500 * 109.47127 * 330.00550 * 19 17 15 23 23 S 1.70978 * 124.91683 * 180.30364 * 2 1 3 24 24 H 1.09008 * 109.46991 * 269.69540 * 1 2 3 25 25 H 1.08996 * 109.47312 * 29.69288 * 1 2 3 26 26 H 1.08995 * 109.47364 * 149.70024 * 1 2 3 27 27 H 1.08002 * 122.74893 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46773 * 299.99731 * 8 6 5 29 29 H 1.08998 * 109.46926 * 59.99977 * 8 6 5 30 30 H 1.08999 * 109.46971 * 180.02562 * 8 6 5 31 31 H 1.00893 * 110.99994 * 328.95121 * 9 6 5 32 32 H 1.08996 * 109.47480 * 299.99735 * 10 9 6 33 33 H 1.09000 * 109.47190 * 60.00401 * 10 9 6 34 34 H 1.08997 * 109.47215 * 59.99992 * 12 11 10 35 35 H 1.09000 * 109.47492 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47368 * 299.99890 * 12 11 10 37 37 H 1.09004 * 109.47161 * 59.99692 * 13 11 10 38 38 H 1.09004 * 109.47888 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.47360 * 300.00010 * 13 11 10 40 40 H 1.09008 * 109.47142 * 300.00383 * 14 11 10 41 41 H 1.09002 * 109.47251 * 59.99611 * 14 11 10 42 42 H 0.97002 * 120.00384 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0055 5 6 3.9354 -0.4006 -0.0098 6 6 5.3574 -0.8993 -0.0159 7 1 6.0212 -0.1091 0.3348 8 6 5.7507 -1.3015 -1.4388 9 7 5.4715 -2.0644 0.8715 10 6 6.8472 -2.2191 1.3630 11 6 6.9261 -3.4396 2.2822 12 6 5.9793 -3.2467 3.4685 13 6 6.5190 -4.6920 1.5033 14 6 8.3587 -3.6004 2.7947 15 6 8.4366 -4.8029 3.6996 16 1 7.5526 -5.3932 3.8906 17 6 9.6362 -5.1489 4.2847 18 7 9.7040 -6.1980 5.0748 19 14 11.1651 -4.1276 3.9550 20 1 11.2668 -3.0473 4.9689 21 1 12.3671 -4.9959 4.0346 22 1 11.0767 -3.5275 2.5995 23 16 2.4857 -1.4020 -0.0074 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3634 0.8927 -0.5090 26 1 -0.3634 -0.8872 -0.5184 27 1 4.2532 1.7001 -0.0056 28 1 5.0870 -2.0918 -1.7895 29 1 5.6661 -0.4370 -2.0972 30 1 6.7791 -1.6627 -1.4430 31 1 4.8187 -2.0003 1.6381 32 1 7.5217 -2.3562 0.5179 33 1 7.1371 -1.3271 1.9184 34 1 4.9586 -3.1319 3.1039 35 1 6.0358 -4.1160 4.1237 36 1 6.2694 -2.3545 4.0236 37 1 7.1934 -4.8294 0.6582 38 1 6.5756 -5.5616 2.1581 39 1 5.4982 -4.5772 1.1386 40 1 9.0336 -3.7377 1.9497 41 1 8.6484 -2.7082 3.3497 42 1 10.5480 -6.4418 5.4861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588232191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:21 Heat of formation + Delta-G solvation = 5.092853 kcal Electronic energy + Delta-G solvation = -20055.185872 eV Core-core repulsion = 17160.492376 eV Total energy + Delta-G solvation = -2894.693496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73813 -39.38217 -36.87657 -34.48766 -32.91831 -31.19018 -29.38485 -28.58650 -27.90953 -26.76170 -24.96786 -24.03712 -22.35510 -20.52866 -19.37702 -18.87046 -18.83780 -16.93194 -16.44609 -16.27115 -15.95482 -15.63500 -15.14836 -15.06009 -14.70036 -14.41805 -14.16688 -14.07644 -13.76427 -13.57828 -13.22737 -13.13195 -12.91202 -12.82397 -12.64133 -12.54514 -12.39024 -12.20655 -12.08054 -11.97780 -11.71611 -11.35831 -11.02783 -10.83406 -10.69431 -10.54384 -10.18154 -9.68917 -9.39152 -8.21109 -6.21345 -0.25964 0.40997 0.86081 1.35995 1.38077 1.48885 1.83587 2.39970 3.12343 3.14122 3.31194 3.71143 4.09289 4.15617 4.17400 4.30713 4.33099 4.41464 4.54855 4.67597 4.68942 4.72276 4.73972 4.88394 4.91787 4.96921 5.03923 5.04774 5.10989 5.18957 5.26755 5.33800 5.37553 5.45596 5.53040 5.62633 5.75750 5.82215 6.05168 6.37817 6.43299 6.77734 6.86265 7.41150 8.95183 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032917 B = 0.003502 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.408242 B = 7992.905859 C = 8306.657893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.505 5.505 4 C 0.029 3.971 5 C -0.232 4.232 6 C 0.162 3.838 7 H 0.068 0.932 8 C -0.131 4.131 9 N -0.679 5.679 10 C 0.080 3.920 11 C -0.048 4.048 12 C -0.125 4.125 13 C -0.108 4.108 14 C -0.002 4.002 15 C -0.503 4.503 16 H 0.044 0.956 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.247 1.247 23 S 0.167 5.833 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.342 0.658 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.955 14.249 -13.769 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.251 4.251 3 N -0.221 5.221 4 C -0.123 4.123 5 C -0.354 4.354 6 C 0.050 3.950 7 H 0.086 0.914 8 C -0.189 4.189 9 N -0.312 5.312 10 C -0.049 4.049 11 C -0.048 4.048 12 C -0.182 4.182 13 C -0.165 4.165 14 C -0.040 4.040 15 C -0.541 4.541 16 H 0.062 0.938 17 C -0.195 4.195 18 N -0.598 5.598 19 Si 0.765 3.235 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.171 1.171 23 S 0.422 5.578 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.201 0.799 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.264 13.161 -14.196 25.283 hybrid contribution 1.786 1.371 1.109 2.510 sum -14.478 14.532 -13.087 24.332 Atomic orbital electron populations 1.20598 0.83173 1.05199 1.04917 1.27716 1.03320 0.91553 1.02520 1.66350 1.05235 1.32819 1.17673 1.21911 0.91340 0.96244 1.02796 1.26135 1.00177 0.96551 1.12526 1.19918 0.88020 0.91521 0.95545 0.91427 1.21780 1.01842 1.01600 0.93678 1.60717 1.06586 1.40618 1.23322 1.21946 0.89587 0.96065 0.97309 1.20343 0.95181 0.94887 0.94413 1.21697 0.98277 1.00697 0.97528 1.21502 1.00591 0.96229 0.98195 1.19591 0.94247 0.95011 0.95178 1.21436 0.95395 1.11034 1.26234 0.93772 1.25923 1.02429 0.96222 0.94948 1.70064 1.27086 1.28735 1.33865 0.85801 0.78793 0.78811 0.80076 1.19705 1.21580 1.17097 1.84176 0.96079 1.10652 1.66932 0.88513 0.89037 0.88262 0.79930 0.92459 0.91354 0.91964 0.83838 0.90857 0.95165 0.91889 0.94431 0.93826 0.94165 0.95425 0.91557 0.96681 0.97068 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.46 71.24 0.75 -0.14 16 2 C 0.03 0.48 7.39 88.52 0.65 1.14 16 3 N -0.51 -11.46 10.54 -191.44 -2.02 -13.48 16 4 C 0.03 0.60 11.24 83.65 0.94 1.54 16 5 C -0.23 -4.75 5.20 24.64 0.13 -4.62 16 6 C 0.16 3.33 3.07 44.17 0.14 3.46 16 7 H 0.07 1.34 7.79 -2.39 -0.02 1.32 16 8 C -0.13 -2.50 9.40 71.98 0.68 -1.82 16 9 N -0.68 -16.54 5.36 -495.44 -2.65 -19.19 16 10 C 0.08 2.31 4.45 86.30 0.38 2.69 16 11 C -0.05 -1.74 0.60 -52.18 -0.03 -1.78 16 12 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 13 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 14 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 15 C -0.50 -28.06 8.20 25.60 0.21 -27.85 16 16 H 0.04 2.71 5.92 -2.91 -0.02 2.69 16 17 C 0.00 0.02 5.47 84.66 0.46 0.48 16 18 N -0.96 -60.10 13.96 21.45 0.30 -59.80 16 19 Si 0.94 44.47 27.47 68.60 1.88 46.36 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 23 S 0.17 3.14 22.82 -56.49 -1.29 1.85 16 24 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.23 7.45 -2.39 -0.02 1.21 16 31 H 0.34 8.40 6.23 -89.70 -0.56 7.84 16 32 H 0.07 2.09 7.43 -2.39 -0.02 2.07 16 33 H 0.03 0.86 8.06 -2.39 -0.02 0.84 16 34 H 0.06 1.86 6.57 -2.39 -0.02 1.85 16 35 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.03 1.17 6.62 -2.38 -0.02 1.16 16 39 H 0.07 2.13 7.60 -2.38 -0.02 2.12 16 40 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 41 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -66.09 343.87 2.15 -63.94 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.38 Total: 14.51 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 5.55 Total: -34.18 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.37 Total: -92.47 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.29 Total: 1.85 kcal Total: -66.09 2.15 -63.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588232191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.032 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds