Wall clock time and date at job start Tue Mar 31 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29028 * 124.91593 * 2 1 4 4 C 1.31780 * 117.12470 * 180.02562 * 3 2 1 5 5 C 1.33641 * 114.50231 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.03785 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47151 * 339.99353 * 6 5 4 8 8 C 1.52994 * 109.47391 * 99.99803 * 6 5 4 9 9 N 1.46906 * 109.46865 * 219.99799 * 6 5 4 10 10 C 1.46901 * 110.99793 * 155.00158 * 9 6 5 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 6 12 12 C 1.53002 * 109.47233 * 299.99531 * 11 10 9 13 13 C 1.52996 * 109.47328 * 60.00000 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47282 * 89.99593 * 19 17 15 21 21 H 1.48498 * 109.47211 * 210.00040 * 19 17 15 22 22 H 1.48506 * 109.46856 * 330.00220 * 19 17 15 23 23 S 1.70981 * 124.91823 * 180.32158 * 2 1 3 24 24 H 1.09003 * 109.47675 * 89.97287 * 1 2 3 25 25 H 1.09004 * 109.47082 * 209.97252 * 1 2 3 26 26 H 1.09004 * 109.47444 * 329.97140 * 1 2 3 27 27 H 1.08004 * 122.74969 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47268 * 300.00245 * 8 6 5 29 29 H 1.09003 * 109.47340 * 59.99666 * 8 6 5 30 30 H 1.08995 * 109.47731 * 179.97438 * 8 6 5 31 31 H 1.00898 * 110.99995 * 278.95236 * 9 6 5 32 32 H 1.09002 * 109.47401 * 59.99808 * 10 9 6 33 33 H 1.09001 * 109.46874 * 299.99821 * 10 9 6 34 34 H 1.09000 * 109.46986 * 60.00203 * 12 11 10 35 35 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 37 37 H 1.08992 * 109.47554 * 59.99639 * 13 11 10 38 38 H 1.09004 * 109.47108 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46870 * 299.99783 * 13 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 14 11 10 41 41 H 1.09002 * 109.47508 * 59.99571 * 14 11 10 42 42 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3574 -0.8993 -0.0018 7 1 6.0199 -0.1080 -0.3526 8 6 5.7557 -1.3056 1.4185 9 7 5.4684 -2.0619 -0.8930 10 6 6.8424 -2.2152 -1.3897 11 6 6.9180 -3.4330 -2.3127 12 6 6.5136 -4.6876 -1.5360 13 6 5.9672 -3.2366 -3.4952 14 6 8.3492 -3.5930 -2.8295 15 6 8.4240 -4.7929 -3.7382 16 1 7.5392 -5.3826 -3.9279 17 6 9.6217 -5.1378 -4.3276 18 7 10.6989 -4.4194 -4.0971 19 14 9.7142 -6.6247 -5.4546 20 1 9.4326 -6.2057 -6.8512 21 1 11.0734 -7.2183 -5.3804 22 1 8.7100 -7.6323 -5.0281 23 16 2.4857 -1.4020 -0.0079 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8897 0.5143 27 1 4.2531 1.7001 -0.0002 28 1 5.6733 -0.4431 2.0797 29 1 5.0932 -2.0969 1.7693 30 1 6.7840 -1.6668 1.4183 31 1 5.1549 -2.9026 -0.4314 32 1 7.5199 -2.3546 -0.5472 33 1 7.1303 -1.3215 -1.9434 34 1 5.4942 -4.5739 -1.1674 35 1 6.5680 -5.5553 -2.1934 36 1 7.1910 -4.8275 -0.6935 37 1 6.2553 -2.3428 -4.0485 38 1 6.0215 -4.1040 -4.1530 39 1 4.9478 -3.1229 -3.1266 40 1 8.6378 -2.6993 -3.3829 41 1 9.0263 -3.7331 -1.9869 42 1 11.5415 -4.6619 -4.5120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588232192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:26 Heat of formation + Delta-G solvation = 19.686214 kcal Electronic energy + Delta-G solvation = -20004.253907 eV Core-core repulsion = 17110.193227 eV Total energy + Delta-G solvation = -2894.060680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.76882 -38.03304 -35.59695 -32.61003 -31.89729 -29.86799 -27.68426 -26.89686 -26.34859 -25.32423 -24.03872 -22.69977 -21.64137 -19.58358 -17.97605 -17.78731 -16.27500 -15.69820 -15.15463 -14.91239 -14.77523 -14.33874 -14.13526 -13.55693 -13.32388 -13.25773 -12.97728 -12.80778 -12.57942 -12.37208 -12.01427 -11.97794 -11.75822 -11.58657 -11.13534 -11.00544 -10.89289 -10.77121 -10.51265 -10.30079 -10.15286 -9.71760 -9.66446 -9.24748 -9.04220 -8.86207 -8.76457 -8.32549 -8.19974 -5.97213 -3.97303 0.69358 1.32430 1.78227 2.79073 3.32884 3.39514 3.42041 4.06792 4.30560 4.49367 4.74529 4.92704 4.99005 5.15362 5.21343 5.24841 5.38718 5.48455 5.55728 5.62394 5.68103 5.73260 5.77944 5.92232 6.00169 6.12982 6.22648 6.29552 6.47429 6.64099 6.76124 6.81473 7.14307 7.18848 7.24054 7.32703 7.54872 7.68881 7.69987 7.83656 8.02966 8.47236 9.08017 9.65623 11.14469 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033418 B = 0.003353 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.662019 B = 8348.212249 C = 8686.781533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.022 3.978 3 N -0.474 5.474 4 C 0.024 3.976 5 C -0.187 4.187 6 C 0.155 3.845 7 H 0.097 0.903 8 C -0.178 4.178 9 N -0.680 5.680 10 C 0.071 3.929 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 S 0.145 5.855 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.171 0.829 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.340 0.660 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 7.245 11.176 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.256 4.256 3 N -0.189 5.189 4 C -0.127 4.127 5 C -0.309 4.309 6 C 0.042 3.958 7 H 0.115 0.885 8 C -0.237 4.237 9 N -0.312 5.312 10 C -0.058 4.058 11 C -0.059 4.059 12 C -0.186 4.186 13 C -0.173 4.173 14 C -0.003 4.003 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.199 1.199 23 S 0.400 5.600 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.188 0.812 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.205 7.041 10.562 21.381 hybrid contribution 1.402 -0.322 0.086 1.441 sum -15.803 6.719 10.648 20.206 Atomic orbital electron populations 1.20378 0.85584 1.03809 1.03701 1.26979 1.01703 0.91720 1.05159 1.66243 1.04829 1.31841 1.16003 1.21586 0.91055 0.95737 1.04336 1.26063 0.99523 0.96066 1.09267 1.19893 0.88786 0.95265 0.91861 0.88473 1.22521 1.02225 1.02035 0.96934 1.60708 1.25316 1.05622 1.39511 1.22166 0.86266 1.00010 0.97329 1.20634 0.99342 0.91738 0.94137 1.21773 0.97885 0.99243 0.99733 1.21598 0.97390 1.00988 0.97366 1.19116 0.88496 0.96974 0.95720 1.21233 0.94665 1.11494 1.27129 0.92292 1.25015 0.95977 0.96731 0.96865 1.69967 0.99988 1.39380 1.44425 0.86666 0.77192 0.83274 0.81299 1.20770 1.21398 1.19933 1.83960 0.97069 1.11679 1.67339 0.89824 0.90355 0.89633 0.81202 0.91902 0.92360 0.91428 0.84000 0.95432 0.91347 0.94914 0.91630 0.94067 0.94183 0.92663 0.93923 0.96683 0.96909 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.46 36.00 0.38 -0.18 16 2 C 0.02 0.24 7.39 -13.46 -0.10 0.14 16 3 N -0.47 -6.18 10.54 -11.86 -0.13 -6.30 16 4 C 0.02 0.29 11.24 -19.18 -0.22 0.08 16 5 C -0.19 -2.25 5.53 -35.92 -0.20 -2.44 16 6 C 0.15 1.83 3.04 -68.87 -0.21 1.62 16 7 H 0.10 1.14 7.79 -51.93 -0.40 0.74 16 8 C -0.18 -1.84 9.14 37.15 0.34 -1.50 16 9 N -0.68 -9.38 5.26 -107.95 -0.57 -9.95 16 10 C 0.07 1.16 4.45 -3.82 -0.02 1.14 16 11 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 12 C -0.13 -2.33 7.89 37.16 0.29 -2.04 16 13 C -0.12 -2.23 8.07 37.16 0.30 -1.93 16 14 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.51 -13.73 7.65 -34.44 -0.26 -13.99 16 16 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 S 0.15 1.60 22.97 -107.50 -2.47 -0.87 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.72 7.45 -51.93 -0.39 0.34 16 31 H 0.34 4.56 6.51 -39.29 -0.26 4.30 16 32 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 33 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 35 H 0.06 1.30 6.61 -51.93 -0.34 0.96 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -30.19 347.85 -9.14 -39.32 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.94 Total: 0.19 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 0.00 Total: -18.14 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.04 Total: -42.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.47 Total: -0.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.19 -9.14 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588232192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.009 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds