Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29028 * 124.91593 * 2 1 4 4 C 1.31780 * 117.12470 * 180.02562 * 3 2 1 5 5 C 1.33641 * 114.50231 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.03785 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47151 * 339.99353 * 6 5 4 8 8 C 1.52994 * 109.47391 * 99.99803 * 6 5 4 9 9 N 1.46906 * 109.46865 * 219.99799 * 6 5 4 10 10 C 1.46901 * 110.99793 * 155.00158 * 9 6 5 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 6 12 12 C 1.53002 * 109.47233 * 299.99531 * 11 10 9 13 13 C 1.52996 * 109.47328 * 60.00000 * 11 10 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47282 * 89.99593 * 19 17 15 21 21 H 1.48498 * 109.47211 * 210.00040 * 19 17 15 22 22 H 1.48506 * 109.46856 * 330.00220 * 19 17 15 23 23 S 1.70981 * 124.91823 * 180.32158 * 2 1 3 24 24 H 1.09003 * 109.47675 * 89.97287 * 1 2 3 25 25 H 1.09004 * 109.47082 * 209.97252 * 1 2 3 26 26 H 1.09004 * 109.47444 * 329.97140 * 1 2 3 27 27 H 1.08004 * 122.74969 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.47268 * 300.00245 * 8 6 5 29 29 H 1.09003 * 109.47340 * 59.99666 * 8 6 5 30 30 H 1.08995 * 109.47731 * 179.97438 * 8 6 5 31 31 H 1.00898 * 110.99995 * 278.95236 * 9 6 5 32 32 H 1.09002 * 109.47401 * 59.99808 * 10 9 6 33 33 H 1.09001 * 109.46874 * 299.99821 * 10 9 6 34 34 H 1.09000 * 109.46986 * 60.00203 * 12 11 10 35 35 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 37 37 H 1.08992 * 109.47554 * 59.99639 * 13 11 10 38 38 H 1.09004 * 109.47108 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46870 * 299.99783 * 13 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 14 11 10 41 41 H 1.09002 * 109.47508 * 59.99571 * 14 11 10 42 42 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3574 -0.8993 -0.0018 7 1 6.0199 -0.1080 -0.3526 8 6 5.7557 -1.3056 1.4185 9 7 5.4684 -2.0619 -0.8930 10 6 6.8424 -2.2152 -1.3897 11 6 6.9180 -3.4330 -2.3127 12 6 6.5136 -4.6876 -1.5360 13 6 5.9672 -3.2366 -3.4952 14 6 8.3492 -3.5930 -2.8295 15 6 8.4240 -4.7929 -3.7382 16 1 7.5392 -5.3826 -3.9279 17 6 9.6217 -5.1378 -4.3276 18 7 10.6989 -4.4194 -4.0971 19 14 9.7142 -6.6247 -5.4546 20 1 9.4326 -6.2057 -6.8512 21 1 11.0734 -7.2183 -5.3804 22 1 8.7100 -7.6323 -5.0281 23 16 2.4857 -1.4020 -0.0079 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8897 0.5143 27 1 4.2531 1.7001 -0.0002 28 1 5.6733 -0.4431 2.0797 29 1 5.0932 -2.0969 1.7693 30 1 6.7840 -1.6668 1.4183 31 1 5.1549 -2.9026 -0.4314 32 1 7.5199 -2.3546 -0.5472 33 1 7.1303 -1.3215 -1.9434 34 1 5.4942 -4.5739 -1.1674 35 1 6.5680 -5.5553 -2.1934 36 1 7.1910 -4.8275 -0.6935 37 1 6.2553 -2.3428 -4.0485 38 1 6.0215 -4.1040 -4.1530 39 1 4.9478 -3.1229 -3.1266 40 1 8.6378 -2.6993 -3.3829 41 1 9.0263 -3.7331 -1.9869 42 1 11.5415 -4.6619 -4.5120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588232192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = 1.885393 kcal Electronic energy + Delta-G solvation = -20005.025808 eV Core-core repulsion = 17110.193227 eV Total energy + Delta-G solvation = -2894.832582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66016 -39.38711 -36.91957 -34.50414 -32.89269 -30.98327 -28.85238 -28.46700 -27.88586 -26.74415 -25.04678 -24.30337 -22.73504 -20.54078 -19.40590 -18.75686 -18.32038 -16.82059 -16.60881 -16.02665 -15.90551 -15.71635 -15.22289 -14.73205 -14.61972 -14.45359 -14.16834 -13.96188 -13.86454 -13.47623 -13.23155 -13.20819 -12.85302 -12.77432 -12.67632 -12.52944 -12.41883 -12.25609 -12.15034 -11.96020 -11.89849 -11.38358 -10.87072 -10.78746 -10.52056 -10.49699 -10.09514 -9.66421 -9.32055 -8.13520 -6.20109 -0.16783 0.48425 0.91248 1.41337 1.41683 1.52092 1.90013 2.44135 3.14463 3.20725 3.38820 3.82392 4.04463 4.16594 4.22404 4.26048 4.30034 4.39566 4.59170 4.68364 4.70287 4.71574 4.78283 4.86295 4.90495 4.96849 5.05786 5.08528 5.16003 5.22256 5.22917 5.32155 5.52987 5.55164 5.59390 5.65346 5.87964 5.93584 6.01546 6.37470 6.43608 6.83918 6.95219 7.47226 8.98772 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033418 B = 0.003353 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.662019 B = 8348.212249 C = 8686.781533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.504 5.504 4 C 0.015 3.985 5 C -0.202 4.202 6 C 0.158 3.842 7 H 0.095 0.905 8 C -0.171 4.171 9 N -0.678 5.678 10 C 0.085 3.915 11 C -0.055 4.055 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.041 3.959 15 C -0.513 4.513 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.954 3.046 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.262 1.262 23 S 0.159 5.841 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.181 0.819 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.345 0.655 32 H 0.028 0.972 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.065 0.935 40 H -0.017 1.017 41 H -0.014 1.014 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 6.552 11.731 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.256 4.256 3 N -0.219 5.219 4 C -0.135 4.135 5 C -0.324 4.324 6 C 0.045 3.955 7 H 0.113 0.887 8 C -0.231 4.231 9 N -0.310 5.310 10 C -0.044 4.044 11 C -0.055 4.055 12 C -0.179 4.179 13 C -0.164 4.164 14 C 0.003 3.997 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.780 3.220 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.186 1.186 23 S 0.413 5.587 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.198 0.802 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.002 0.998 41 H 0.005 0.995 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.347 6.342 11.126 23.201 hybrid contribution 2.000 -0.052 -0.062 2.002 sum -17.346 6.290 11.064 21.515 Atomic orbital electron populations 1.20570 0.83214 1.05138 1.04758 1.27626 1.03202 0.91353 1.03444 1.66305 1.05255 1.32830 1.17539 1.21827 0.91292 0.96309 1.04095 1.26034 0.99782 0.96331 1.10213 1.19871 0.89034 0.94263 0.92286 0.88667 1.22447 1.01921 1.02629 0.96064 1.60599 1.23230 1.06550 1.40647 1.21837 0.87963 0.97976 0.96646 1.20493 0.95824 0.94087 0.95119 1.21680 0.99838 0.97389 0.99007 1.21498 0.98487 0.99628 0.96784 1.18992 0.91593 0.94910 0.94164 1.21628 0.94765 1.11902 1.26851 0.91643 1.25900 0.95771 0.99758 0.98634 1.70107 1.00587 1.41333 1.45904 0.85604 0.77339 0.79859 0.79216 1.20268 1.21281 1.18613 1.83840 0.96435 1.11323 1.67065 0.88762 0.88230 0.89113 0.80233 0.90804 0.91848 0.91901 0.83463 0.95409 0.92330 0.91576 0.93519 0.94184 0.95307 0.94303 0.91592 0.99826 0.99529 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.46 71.23 0.75 -0.21 16 2 C 0.02 0.42 7.39 88.52 0.65 1.07 16 3 N -0.50 -12.44 10.54 -191.44 -2.02 -14.45 16 4 C 0.02 0.36 11.24 83.66 0.94 1.30 16 5 C -0.20 -4.51 5.53 24.64 0.14 -4.37 16 6 C 0.16 3.49 3.04 44.16 0.13 3.63 16 7 H 0.10 2.15 7.79 -2.39 -0.02 2.13 16 8 C -0.17 -3.23 9.14 71.98 0.66 -2.57 16 9 N -0.68 -17.53 5.26 -495.44 -2.61 -20.14 16 10 C 0.08 2.73 4.45 86.30 0.38 3.11 16 11 C -0.05 -2.11 0.60 -52.18 -0.03 -2.14 16 12 C -0.12 -4.23 7.89 71.98 0.57 -3.66 16 13 C -0.11 -4.01 8.07 71.98 0.58 -3.43 16 14 C 0.04 2.09 4.04 29.85 0.12 2.21 16 15 C -0.51 -28.14 7.65 25.60 0.20 -27.95 16 16 H 0.07 3.44 5.68 -2.91 -0.02 3.43 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 19 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 S 0.16 3.15 22.97 -56.49 -1.30 1.85 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 31 H 0.34 8.34 6.51 -89.70 -0.58 7.76 16 32 H 0.03 0.89 7.44 -2.39 -0.02 0.88 16 33 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 34 H 0.07 1.84 6.57 -2.39 -0.02 1.83 16 35 H 0.05 1.79 6.61 -2.39 -0.02 1.77 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.04 1.56 6.62 -2.38 -0.02 1.55 16 39 H 0.07 2.16 7.60 -2.39 -0.02 2.14 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -65.26 347.85 2.35 -62.91 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.41 Total: 13.14 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 5.55 Total: -32.78 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -4.34 Total: -91.42 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.30 Total: 1.85 kcal Total: -65.26 2.35 -62.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588232192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.793 kcal (2) G-P(sol) polarization free energy of solvation -65.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds