Wall clock time and date at job start Tue Mar 31 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29032 * 124.91146 * 2 1 4 4 C 1.31784 * 117.11714 * 180.22485 * 3 2 1 5 5 C 1.50701 * 122.74531 * 179.75025 * 4 3 2 6 6 H 1.09002 * 109.47060 * 164.71275 * 5 4 3 7 7 C 1.53002 * 109.47419 * 284.71356 * 5 4 3 8 8 N 1.46901 * 109.46921 * 44.71094 * 5 4 3 9 9 C 1.46900 * 110.99890 * 154.99793 * 8 5 4 10 10 C 1.52996 * 109.47450 * 180.02562 * 9 8 5 11 11 C 1.53003 * 109.46989 * 300.00061 * 10 9 8 12 12 C 1.52999 * 109.47087 * 59.99996 * 10 9 8 13 13 C 1.50700 * 109.47420 * 180.02562 * 10 9 8 14 14 H 1.08003 * 119.99807 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99918 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00158 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99680 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47146 * 60.00043 * 17 15 13 19 19 H 1.48505 * 109.46635 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47143 * 299.99677 * 17 15 13 21 21 C 1.33635 * 114.50248 * 359.48411 * 4 3 2 22 22 C 1.50697 * 126.03551 * 180.26771 * 21 4 3 23 23 S 1.70974 * 124.91825 * 179.69612 * 2 1 3 24 24 H 1.08997 * 109.46868 * 180.32606 * 1 2 3 25 25 H 1.08996 * 109.47225 * 300.33353 * 1 2 3 26 26 H 1.08998 * 109.46877 * 60.33294 * 1 2 3 27 27 H 1.09002 * 109.47075 * 59.99368 * 7 5 4 28 28 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 29 29 H 1.09000 * 109.46986 * 300.00096 * 7 5 4 30 30 H 1.00898 * 111.00476 * 278.95183 * 8 5 4 31 31 H 1.09002 * 109.47391 * 300.00224 * 9 8 5 32 32 H 1.09005 * 109.47266 * 59.99895 * 9 8 5 33 33 H 1.08997 * 109.47061 * 59.99881 * 11 10 9 34 34 H 1.09000 * 109.47330 * 180.02562 * 11 10 9 35 35 H 1.09005 * 109.47339 * 299.99835 * 11 10 9 36 36 H 1.08993 * 109.47164 * 60.00358 * 12 10 9 37 37 H 1.09000 * 109.46899 * 180.02562 * 12 10 9 38 38 H 1.09004 * 109.47028 * 299.99787 * 12 10 9 39 39 H 0.97001 * 119.99806 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47545 * 90.00183 * 22 21 4 41 41 H 1.09007 * 109.47010 * 210.00310 * 22 21 4 42 42 H 1.09001 * 109.47192 * 329.99883 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0046 5 6 4.5307 2.0247 -0.0107 6 1 5.5212 1.6570 0.2572 7 6 4.5785 2.6475 -1.4074 8 7 4.1046 3.0385 0.9632 9 6 5.2477 3.8362 1.4269 10 6 4.7658 4.8785 2.4379 11 6 3.7389 5.7973 1.7730 12 6 4.1201 4.1711 3.6311 13 6 5.9383 5.6972 2.9131 14 1 6.9284 5.4942 2.5323 15 6 5.7471 6.7055 3.8339 16 7 4.5415 6.9531 4.2971 17 14 7.2006 7.7209 4.4223 18 1 7.8265 8.4071 3.2637 19 1 6.7327 8.7324 5.4038 20 1 8.1978 6.8299 5.0678 21 6 3.9354 -0.4005 0.0022 22 6 5.3575 -0.8992 0.0049 23 16 2.4857 -1.4019 0.0074 24 1 -0.3633 -1.0276 0.0058 25 1 -0.3633 0.5190 0.8869 26 1 -0.3633 0.5087 -0.8930 27 1 3.5879 3.0151 -1.6754 28 1 5.2873 3.4756 -1.4119 29 1 4.8946 1.8953 -2.1301 30 1 3.3837 3.6299 0.5778 31 1 5.9792 3.1818 1.9010 32 1 5.7080 4.3399 0.5768 33 1 2.8907 5.2054 1.4290 34 1 3.3958 6.5402 2.4931 35 1 4.1988 6.3013 0.9229 36 1 4.8516 3.5166 4.1048 37 1 3.7764 4.9137 4.3512 38 1 3.2719 3.5793 3.2871 39 1 4.4070 7.6627 4.9447 40 1 5.7004 -1.0140 1.0332 41 1 5.4058 -1.8620 -0.5038 42 1 5.9949 -0.1824 -0.5127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:42 Heat of formation + Delta-G solvation = 27.915525 kcal Electronic energy + Delta-G solvation = -20523.669435 eV Core-core repulsion = 17629.965605 eV Total energy + Delta-G solvation = -2893.703831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98598 -37.04762 -34.79585 -33.02240 -31.22808 -30.26161 -28.60671 -25.85551 -25.49043 -25.16587 -24.26008 -23.06718 -21.51550 -18.82556 -18.33362 -17.54976 -15.89371 -15.44923 -15.05532 -14.67732 -14.21417 -14.10556 -13.74407 -13.44728 -13.30102 -13.02234 -12.74335 -12.63528 -12.45569 -12.15459 -12.02307 -11.94510 -11.74878 -11.26309 -11.09794 -10.86223 -10.81615 -10.59791 -10.52294 -10.12278 -10.00730 -9.43668 -9.32616 -9.11606 -9.02623 -8.58147 -8.43462 -8.24047 -7.58670 -5.86374 -3.96906 0.81027 1.41239 1.78914 2.97232 3.35183 3.39987 3.42402 4.17955 4.47195 4.83931 4.95428 5.04130 5.15783 5.28958 5.35119 5.38716 5.40941 5.41644 5.51967 5.68235 5.77081 5.84746 5.99106 6.05110 6.21758 6.38957 6.39195 6.53117 6.78975 6.95969 7.15598 7.24000 7.46394 7.54150 7.77583 7.81624 7.87673 8.01230 8.09087 8.27900 8.40772 8.61081 9.04451 9.67693 11.14001 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.003953 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.562562 B = 7081.863683 C = 7437.949919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.044 3.956 3 N -0.447 5.447 4 C 0.097 3.903 5 C 0.154 3.846 6 H 0.088 0.912 7 C -0.175 4.175 8 N -0.671 5.671 9 C 0.075 3.925 10 C 0.070 3.930 11 C -0.132 4.132 12 C -0.118 4.118 13 C -0.506 4.506 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.228 4.228 22 C -0.073 4.073 23 S 0.083 5.917 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.346 0.654 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.082 0.918 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -15.943 -10.489 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.234 4.234 3 N -0.160 5.160 4 C -0.035 4.035 5 C 0.040 3.960 6 H 0.106 0.894 7 C -0.234 4.234 8 N -0.303 5.303 9 C -0.053 4.053 10 C 0.070 3.930 11 C -0.189 4.189 12 C -0.176 4.176 13 C -0.545 4.545 14 H 0.069 0.931 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.349 4.349 22 C -0.132 4.132 23 S 0.338 5.662 24 H 0.093 0.907 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.166 0.834 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.045 -16.794 -9.798 20.087 hybrid contribution 1.555 1.792 -0.398 2.406 sum -3.490 -15.002 -10.196 18.472 Atomic orbital electron populations 1.20378 0.85507 1.02998 1.04427 1.26915 1.01478 0.90585 1.04471 1.65986 1.04592 1.30952 1.14518 1.20172 0.89986 0.93353 0.99954 1.20056 0.94354 0.90158 0.91382 0.89410 1.22450 1.02566 1.01052 0.97336 1.60526 1.12925 1.18372 1.38508 1.22203 0.91052 0.94825 0.97216 1.18069 0.93880 0.90213 0.90874 1.21824 0.97033 1.00576 0.99507 1.21623 0.97461 0.98584 0.99893 1.21071 0.93482 1.15933 1.24022 0.93104 1.24881 0.95411 0.97060 0.96188 1.69832 1.20210 1.31370 1.30890 0.86734 0.83120 0.80040 0.78479 1.20497 1.21392 1.20446 1.25554 0.99878 0.95431 1.13998 1.20215 0.88894 1.01089 1.02991 1.83700 0.98516 1.13469 1.70528 0.90692 0.89365 0.89682 0.92079 0.91787 0.92841 0.83386 0.92726 0.96782 0.96939 0.89907 0.96290 0.96470 0.90842 0.96103 0.93185 0.90527 0.91466 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.47 36.01 0.38 -0.30 16 2 C 0.04 0.58 7.39 -13.45 -0.10 0.48 16 3 N -0.45 -7.17 10.43 -8.05 -0.08 -7.26 16 4 C 0.10 1.51 5.64 -84.22 -0.47 1.04 16 5 C 0.15 2.45 2.76 -68.86 -0.19 2.26 16 6 H 0.09 1.33 6.33 -51.93 -0.33 1.00 16 7 C -0.17 -2.47 9.14 37.16 0.34 -2.13 16 8 N -0.67 -12.80 5.37 -107.95 -0.58 -13.38 16 9 C 0.08 1.60 4.38 -3.83 -0.02 1.59 16 10 C 0.07 1.74 0.57 -155.66 -0.09 1.65 16 11 C -0.13 -3.21 7.92 37.16 0.29 -2.91 16 12 C -0.12 -2.99 8.09 37.16 0.30 -2.69 16 13 C -0.51 -13.80 8.01 -34.44 -0.28 -14.07 16 14 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 15 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 16 N -0.88 -24.88 9.35 55.43 0.52 -24.36 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.23 -3.03 6.59 -35.92 -0.24 -3.26 16 22 C -0.07 -0.75 9.81 36.00 0.35 -0.40 16 23 S 0.08 0.96 23.17 -107.50 -2.49 -1.53 16 24 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 28 H 0.06 0.91 7.45 -51.93 -0.39 0.53 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.35 6.82 6.51 -39.29 -0.26 6.56 16 31 H 0.05 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.01 0.29 7.44 -51.93 -0.39 -0.09 16 33 H 0.01 0.27 6.57 -51.93 -0.34 -0.07 16 34 H 0.08 2.23 6.07 -51.93 -0.31 1.91 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 2.03 6.07 -51.93 -0.32 1.71 16 38 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.76 7.11 -51.93 -0.37 0.40 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -29.49 343.61 -9.14 -38.64 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.86 Total: 3.46 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 0.19 Total: -17.05 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.14 Total: -45.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.49 -9.14 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.553 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds