Wall clock time and date at job start Tue Mar 31 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29025 * 124.92167 * 2 1 4 4 C 1.31777 * 117.12954 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.75162 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47262 * 195.02497 * 5 4 3 7 7 C 1.53001 * 109.47223 * 75.02525 * 5 4 3 8 8 N 1.46900 * 109.47017 * 315.02757 * 5 4 3 9 9 C 1.46904 * 110.99876 * 205.00117 * 8 5 4 10 10 C 1.52996 * 109.47267 * 180.02562 * 9 8 5 11 11 C 1.53002 * 109.46761 * 299.99380 * 10 9 8 12 12 C 1.52993 * 109.47313 * 59.99491 * 10 9 8 13 13 C 1.50694 * 109.47199 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00389 * 1.23736 * 13 10 9 15 15 C 1.37881 * 120.00073 * 181.23838 * 13 10 9 16 16 N 1.31510 * 120.00099 * 194.11003 * 15 13 10 17 17 Si 1.86801 * 119.99955 * 14.11005 * 15 13 10 18 18 H 1.48501 * 109.46836 * 84.53261 * 17 15 13 19 19 H 1.48492 * 109.47270 * 204.53293 * 17 15 13 20 20 H 1.48498 * 109.47151 * 324.53783 * 17 15 13 21 21 C 1.33639 * 114.49964 * 0.23357 * 4 3 2 22 22 C 1.50699 * 126.03903 * 179.77008 * 21 4 3 23 23 S 1.70985 * 124.91434 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47280 * 89.99822 * 1 2 3 25 25 H 1.08995 * 109.47177 * 209.99648 * 1 2 3 26 26 H 1.09002 * 109.46930 * 330.00083 * 1 2 3 27 27 H 1.09003 * 109.47494 * 180.02562 * 7 5 4 28 28 H 1.09009 * 109.47206 * 300.00363 * 7 5 4 29 29 H 1.09007 * 109.47132 * 59.99699 * 7 5 4 30 30 H 1.00899 * 110.99744 * 328.94741 * 8 5 4 31 31 H 1.08998 * 109.47458 * 59.99520 * 9 8 5 32 32 H 1.09005 * 109.46716 * 299.99722 * 9 8 5 33 33 H 1.09004 * 109.47321 * 189.51259 * 11 10 9 34 34 H 1.08999 * 109.47582 * 309.52177 * 11 10 9 35 35 H 1.09008 * 109.46862 * 69.51807 * 11 10 9 36 36 H 1.08999 * 109.47333 * 300.00401 * 12 10 9 37 37 H 1.08995 * 109.47198 * 60.00047 * 12 10 9 38 38 H 1.09000 * 109.47527 * 180.02562 * 12 10 9 39 39 H 0.96994 * 120.00281 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47231 * 89.99549 * 22 21 4 41 41 H 1.08998 * 109.47288 * 209.99597 * 22 21 4 42 42 H 1.09002 * 109.46914 * 329.99857 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0244 0.0000 6 1 5.5213 1.6552 -0.2658 7 6 4.5787 2.6553 1.3931 8 7 4.1048 3.0327 -0.9797 9 6 5.2480 3.8277 -1.4479 10 6 4.7659 4.8650 -2.4640 11 6 4.1195 4.1518 -3.6532 12 6 3.7396 5.7875 -1.8032 13 6 5.9385 5.6809 -2.9438 14 1 6.9316 5.4667 -2.5774 15 6 5.7436 6.7010 -3.8507 16 7 6.7719 7.2277 -4.4790 17 14 4.0189 7.3350 -4.1869 18 1 3.6575 8.3515 -3.1665 19 1 3.9724 7.9509 -5.5373 20 1 3.0557 6.2065 -4.1242 21 6 3.9354 -0.4007 -0.0040 22 6 5.3574 -0.8995 -0.0094 23 16 2.4856 -1.4021 -0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 5.2869 3.4839 1.3927 28 1 3.5881 3.0245 1.6590 29 1 4.8947 1.9071 2.1201 30 1 3.6219 2.6028 -1.7543 31 1 5.9794 3.1705 -1.9182 32 1 5.7083 4.3362 -0.6007 33 1 3.9293 4.8718 -4.4492 34 1 4.7902 3.3744 -4.0191 35 1 3.1782 3.7009 -3.3387 36 1 2.8914 5.1976 -1.4558 37 1 4.2001 6.2955 -0.9560 38 1 3.3958 6.5262 -2.5272 39 1 6.6348 7.9456 -5.1167 40 1 5.7033 -1.0225 1.0169 41 1 5.4042 -1.8583 -0.5259 42 1 5.9934 -0.1786 -0.5233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:48 Heat of formation + Delta-G solvation = 48.214364 kcal Electronic energy + Delta-G solvation = -20622.894678 eV Core-core repulsion = 17730.071071 eV Total energy + Delta-G solvation = -2892.823607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19421 -37.28485 -34.97547 -33.06142 -31.60217 -30.41081 -29.22802 -26.16475 -26.00167 -25.16584 -24.49649 -23.22841 -21.36299 -19.00804 -18.55390 -17.76922 -15.98234 -15.65139 -15.29129 -15.19033 -14.86153 -13.94405 -13.70110 -13.47459 -13.40287 -13.14403 -13.01123 -12.76598 -12.68643 -12.29210 -12.24629 -12.04911 -11.94275 -11.80728 -11.75353 -11.39064 -11.02209 -10.57348 -10.22097 -10.00309 -9.95104 -9.78919 -9.55974 -9.27426 -8.90731 -8.65538 -8.47857 -8.31251 -7.78474 -6.04048 -3.99249 0.62499 1.23923 1.63172 2.77197 3.37559 3.47476 3.49778 3.99798 4.49055 4.64617 4.75263 4.89097 5.02063 5.18616 5.25572 5.27761 5.29704 5.38811 5.56687 5.63100 5.73729 5.75856 5.93381 6.05010 6.09881 6.15222 6.22400 6.37557 6.51595 6.58529 6.71424 6.73312 6.92480 7.01227 7.10207 7.42706 7.55791 7.64491 7.79889 7.90554 8.02432 8.59621 9.00614 9.62734 11.09338 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.004323 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.051829 B = 6476.043780 C = 6920.875126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 N -0.441 5.441 4 C 0.071 3.929 5 C 0.158 3.842 6 H 0.055 0.945 7 C -0.131 4.131 8 N -0.673 5.673 9 C 0.083 3.917 10 C 0.042 3.958 11 C -0.143 4.143 12 C -0.134 4.134 13 C -0.511 4.511 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.287 1.287 19 H -0.309 1.309 20 H -0.248 1.248 21 C -0.222 4.222 22 C -0.076 4.076 23 S 0.090 5.910 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.340 0.660 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -18.670 10.422 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.235 4.235 3 N -0.155 5.155 4 C -0.061 4.061 5 C 0.046 3.954 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.305 5.305 9 C -0.045 4.045 10 C 0.040 3.960 11 C -0.200 4.200 12 C -0.191 4.191 13 C -0.549 4.549 14 H 0.089 0.911 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.215 1.215 19 H -0.239 1.239 20 H -0.174 1.174 21 C -0.343 4.343 22 C -0.135 4.135 23 S 0.345 5.655 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.826 -18.648 10.772 23.672 hybrid contribution 0.179 0.548 -0.850 1.027 sum -9.647 -18.101 9.922 22.785 Atomic orbital electron populations 1.20413 0.85317 1.03969 1.03846 1.26991 1.01650 0.90535 1.04315 1.66083 1.04296 1.30729 1.14362 1.20322 0.90387 0.93506 1.01887 1.20111 0.92482 0.87375 0.95467 0.92714 1.21722 1.03014 1.00112 0.94109 1.60605 1.27380 1.24507 1.18040 1.22045 0.89971 0.94660 0.97813 1.18446 0.94461 0.92283 0.90768 1.22286 0.97714 0.99915 1.00112 1.22144 0.98933 0.98788 0.99195 1.20865 0.93527 1.15393 1.25089 0.91130 1.24971 0.96644 0.96531 0.94704 1.69965 1.30653 1.26593 1.26356 0.87255 0.86353 0.79030 0.75264 1.21509 1.23854 1.17420 1.25690 1.00164 0.95534 1.12946 1.20274 0.88758 1.01575 1.02888 1.83792 0.98233 1.13289 1.70144 0.89669 0.90433 0.89195 0.91785 0.91632 0.93458 0.84101 0.96143 0.91656 0.92826 0.94379 0.95443 0.93603 0.93678 0.95322 0.92804 0.90546 0.91189 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 36.01 0.38 -0.25 16 2 C 0.04 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.44 -6.54 10.43 -8.06 -0.08 -6.63 16 4 C 0.07 1.01 5.29 -84.23 -0.45 0.57 16 5 C 0.16 2.38 2.90 -68.86 -0.20 2.18 16 6 H 0.06 0.79 5.99 -51.93 -0.31 0.48 16 7 C -0.13 -1.86 9.40 37.16 0.35 -1.51 16 8 N -0.67 -11.94 5.44 -107.95 -0.59 -12.53 16 9 C 0.08 1.68 4.37 -3.82 -0.02 1.66 16 10 C 0.04 0.97 0.57 -155.67 -0.09 0.88 16 11 C -0.14 -3.18 7.24 37.16 0.27 -2.92 16 12 C -0.13 -3.06 7.54 37.15 0.28 -2.78 16 13 C -0.51 -14.26 8.62 -34.44 -0.30 -14.56 16 14 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 15 C 0.07 2.12 5.32 -17.82 -0.09 2.03 16 16 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 17 Si 0.89 22.59 22.79 -169.99 -3.87 18.72 16 18 H -0.29 -7.31 7.10 56.52 0.40 -6.91 16 19 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 20 H -0.25 -5.92 4.65 56.52 0.26 -5.66 16 21 C -0.22 -2.68 6.59 -35.92 -0.24 -2.92 16 22 C -0.08 -0.71 10.04 36.01 0.36 -0.35 16 23 S 0.09 0.94 23.18 -107.50 -2.49 -1.56 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.92 7.45 -51.93 -0.39 0.53 16 28 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.34 6.22 6.62 -39.29 -0.26 5.96 16 31 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.06 1.33 7.44 -51.93 -0.39 0.95 16 33 H 0.05 1.27 4.30 -51.93 -0.22 1.04 16 34 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.03 0.55 7.06 -51.92 -0.37 0.18 16 36 H 0.04 0.97 7.60 -51.93 -0.39 0.58 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.03 0.68 2.26 -51.93 -0.12 0.57 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.80 6.66 -51.93 -0.35 0.45 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -31.39 333.35 -7.79 -39.18 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.71 Total: 2.27 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 0.16 Total: -17.54 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.10 Total: -46.10 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -3.87 Total: 18.72 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.39 -7.79 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.395 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds