Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.46918 * 2 1 4 4 C 1.35728 * 116.99824 * 179.97438 * 3 2 1 5 5 C 1.38643 * 119.62574 * 179.97438 * 4 3 2 6 6 C 1.39137 * 119.04624 * 180.02562 * 5 4 3 7 7 N 1.39334 * 120.83583 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47088 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47441 * 299.99903 * 9 8 7 11 11 C 1.52996 * 109.47360 * 60.00437 * 9 8 7 12 12 C 1.50707 * 109.46688 * 180.02562 * 9 8 7 13 13 H 1.08000 * 120.00435 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99704 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00128 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99976 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47253 * 59.99846 * 16 14 12 18 18 H 1.48502 * 109.46976 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46990 * 300.00028 * 16 14 12 20 20 C 1.39780 * 118.32636 * 359.97438 * 6 5 4 21 21 F 1.35104 * 120.42161 * 179.97438 * 20 6 5 22 22 C 1.37894 * 119.16234 * 0.25022 * 20 6 5 23 23 N 1.32146 * 120.87160 * 359.50835 * 22 20 6 24 24 H 1.08998 * 109.47190 * 60.00218 * 1 2 3 25 25 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47759 * 299.99924 * 1 2 3 27 27 H 1.08998 * 109.47204 * 239.99564 * 2 1 3 28 28 H 1.09003 * 109.46535 * 119.99544 * 2 1 3 29 29 H 1.08000 * 120.47325 * 0.02562 * 5 4 3 30 30 H 0.97003 * 120.00274 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47300 * 300.00314 * 8 7 6 32 32 H 1.09001 * 109.46632 * 60.00338 * 8 7 6 33 33 H 1.09001 * 109.46817 * 60.00150 * 10 9 8 34 34 H 1.09002 * 109.47081 * 180.02562 * 10 9 8 35 35 H 1.09007 * 109.47048 * 300.00531 * 10 9 8 36 36 H 1.09001 * 109.47126 * 59.99190 * 11 9 8 37 37 H 1.08994 * 109.47575 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46842 * 299.99816 * 11 9 8 39 39 H 0.97000 * 119.99928 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.56704 * 179.72361 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8734 2.8097 0.0000 6 6 5.2545 2.9780 0.0000 7 7 5.8187 4.2520 -0.0010 8 6 4.9553 5.4356 -0.0016 9 6 5.8201 6.6977 -0.0033 10 6 6.7042 6.7121 1.2453 11 6 6.7025 6.7097 -1.2531 12 6 4.9318 7.9152 -0.0033 13 1 3.8580 7.8002 -0.0025 14 6 5.4902 9.1759 -0.0052 15 7 6.7978 9.3159 -0.0067 16 14 4.3892 10.6850 -0.0059 17 1 3.5331 10.6737 1.2074 18 1 5.2286 11.9100 -0.0075 19 1 3.5308 10.6708 -1.2176 20 6 6.0618 1.8369 0.0011 21 9 7.4080 1.9512 0.0007 22 6 5.4668 0.5929 -0.0031 23 7 4.1510 0.4706 0.0016 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.2169 3.6673 -0.0004 30 1 6.7832 4.3554 -0.0013 31 1 4.3257 5.4257 -0.8913 32 1 4.3264 5.4268 0.8887 33 1 7.3466 5.8315 1.2457 34 1 7.3199 7.6115 1.2442 35 1 6.0755 6.7035 2.1358 36 1 6.0726 6.6995 -2.1427 37 1 7.3182 7.6090 -1.2547 38 1 7.3449 5.8291 -1.2528 39 1 7.1906 10.2028 -0.0077 40 1 6.0842 -0.2931 -0.0068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596263444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = -58.548914 kcal Electronic energy + Delta-G solvation = -22158.598627 eV Core-core repulsion = 18694.932241 eV Total energy + Delta-G solvation = -3463.666386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.54415 -40.38415 -38.21322 -37.00403 -34.48181 -32.04044 -31.58811 -29.57929 -29.29337 -25.87850 -25.78758 -25.08626 -23.60399 -22.96004 -21.70417 -18.92768 -18.57135 -17.56441 -17.21907 -16.30668 -15.98139 -15.43133 -15.21121 -14.90209 -14.65283 -14.20042 -13.90289 -13.79945 -13.53437 -13.27282 -12.92237 -12.74893 -12.37885 -12.21128 -11.97262 -11.68988 -11.62317 -11.23732 -11.06625 -10.77805 -10.73218 -10.62151 -10.25240 -10.23164 -9.62699 -9.56450 -9.43531 -8.87927 -8.45143 -8.33636 -7.47896 -6.08173 -4.19655 1.21697 1.57988 3.00295 3.25517 3.30690 3.32944 3.72295 3.85142 4.30914 4.34724 4.46419 4.91416 4.95771 5.07390 5.16404 5.18528 5.29609 5.54359 5.68298 5.71969 5.78117 5.89268 5.96836 6.11461 6.14929 6.37309 6.45267 6.65304 6.77923 6.87587 6.93131 7.19630 7.33710 7.47695 7.48527 7.62311 7.88633 7.93512 7.97440 8.09059 8.31150 8.80257 9.46725 10.93202 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.004154 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.011702 B = 6738.728948 C = 7996.075278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.068 3.932 3 O -0.305 6.305 4 C 0.352 3.648 5 C -0.257 4.257 6 C 0.266 3.734 7 N -0.706 5.706 8 C 0.127 3.873 9 C 0.059 3.941 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.884 5.884 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.076 4.076 21 F -0.139 7.139 22 C 0.149 3.851 23 N -0.570 5.570 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.147 0.853 30 H 0.408 0.592 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.007 0.993 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.087 0.913 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -15.629 -0.001 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.213 6.213 4 C 0.174 3.826 5 C -0.284 4.284 6 C 0.147 3.853 7 N -0.330 5.330 8 C 0.004 3.996 9 C 0.058 3.942 10 C -0.190 4.190 11 C -0.190 4.190 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.104 4.104 21 F -0.118 7.118 22 C -0.007 4.007 23 N -0.298 5.298 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.246 0.754 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.867 -15.868 0.001 16.917 hybrid contribution 0.485 1.517 -0.001 1.592 sum -5.382 -14.351 0.000 15.327 Atomic orbital electron populations 1.21823 0.93309 1.02630 1.03353 1.22551 0.94458 0.81360 1.02421 1.86237 1.16990 1.30287 1.87761 1.19344 0.83642 0.89213 0.90372 1.20248 0.92762 0.96641 1.18748 1.17907 0.91578 0.85898 0.89893 1.45285 1.10239 1.01996 1.75505 1.21946 0.93502 0.84006 1.00096 1.18322 0.92839 0.90042 0.92991 1.21843 0.99280 1.00398 0.97465 1.21840 0.99283 1.00399 0.97464 1.20907 0.92557 0.89870 1.51553 0.92434 1.24883 0.95025 0.98885 0.94632 1.69794 1.09428 1.22966 1.50065 0.86614 0.80443 0.82014 0.78686 1.20237 1.21273 1.20231 1.18033 0.77794 0.94119 1.20451 1.91436 1.28339 1.96701 1.95368 1.22033 0.89814 0.95097 0.93747 1.67364 1.04828 1.32380 1.25186 0.91675 0.90520 0.91669 0.91717 0.91716 0.83488 0.75418 0.92537 0.92534 0.97450 0.89480 0.95373 0.95375 0.89478 0.97446 0.92826 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.07 0.73 6.03 37.16 0.22 0.95 16 3 O -0.31 -4.32 10.12 -18.89 -0.19 -4.51 16 4 C 0.35 5.39 7.48 -17.20 -0.13 5.26 16 5 C -0.26 -4.12 9.31 -39.10 -0.36 -4.49 16 6 C 0.27 4.41 6.70 -83.54 -0.56 3.85 16 7 N -0.71 -12.47 5.13 -58.43 -0.30 -12.77 16 8 C 0.13 2.48 3.78 -4.04 -0.02 2.46 16 9 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16 10 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 11 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 12 C -0.51 -12.92 8.01 -34.44 -0.28 -13.19 16 13 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 15 N -0.88 -23.34 9.35 55.43 0.52 -22.83 16 16 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.08 -1.17 7.35 -39.13 -0.29 -1.45 16 21 F -0.14 -2.17 16.76 2.25 0.04 -2.13 16 22 C 0.15 2.01 11.15 -17.54 -0.20 1.82 16 23 N -0.57 -8.29 9.21 -13.37 -0.12 -8.41 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.15 2.34 6.89 -52.49 -0.36 1.98 16 30 H 0.41 7.28 5.75 -40.82 -0.23 7.04 16 31 H 0.06 1.10 7.99 -51.93 -0.42 0.69 16 32 H 0.06 1.10 7.99 -51.93 -0.42 0.69 16 33 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 34 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 38 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 39 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -26.29 328.84 -6.60 -32.89 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.69 Total: 5.68 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.79 Total: -8.12 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.10 Total: -44.00 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.19 Total: -4.51 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.29 -6.60 -32.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596263444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.658 kcal (2) G-P(sol) polarization free energy of solvation -26.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds