Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.46918 * 2 1 4 4 C 1.35728 * 116.99824 * 179.97438 * 3 2 1 5 5 C 1.38643 * 119.62574 * 179.97438 * 4 3 2 6 6 C 1.39137 * 119.04624 * 180.02562 * 5 4 3 7 7 N 1.39334 * 120.83583 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47088 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47441 * 299.99903 * 9 8 7 11 11 C 1.52996 * 109.47360 * 60.00437 * 9 8 7 12 12 C 1.50707 * 109.46688 * 180.02562 * 9 8 7 13 13 H 1.08000 * 120.00435 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99704 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00128 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99976 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47253 * 59.99846 * 16 14 12 18 18 H 1.48502 * 109.46976 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46990 * 300.00028 * 16 14 12 20 20 C 1.39780 * 118.32636 * 359.97438 * 6 5 4 21 21 F 1.35104 * 120.42161 * 179.97438 * 20 6 5 22 22 C 1.37894 * 119.16234 * 0.25022 * 20 6 5 23 23 N 1.32146 * 120.87160 * 359.50835 * 22 20 6 24 24 H 1.08998 * 109.47190 * 60.00218 * 1 2 3 25 25 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47759 * 299.99924 * 1 2 3 27 27 H 1.08998 * 109.47204 * 239.99564 * 2 1 3 28 28 H 1.09003 * 109.46535 * 119.99544 * 2 1 3 29 29 H 1.08000 * 120.47325 * 0.02562 * 5 4 3 30 30 H 0.97003 * 120.00274 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47300 * 300.00314 * 8 7 6 32 32 H 1.09001 * 109.46632 * 60.00338 * 8 7 6 33 33 H 1.09001 * 109.46817 * 60.00150 * 10 9 8 34 34 H 1.09002 * 109.47081 * 180.02562 * 10 9 8 35 35 H 1.09007 * 109.47048 * 300.00531 * 10 9 8 36 36 H 1.09001 * 109.47126 * 59.99190 * 11 9 8 37 37 H 1.08994 * 109.47575 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46842 * 299.99816 * 11 9 8 39 39 H 0.97000 * 119.99928 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.56704 * 179.72361 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8734 2.8097 0.0000 6 6 5.2545 2.9780 0.0000 7 7 5.8187 4.2520 -0.0010 8 6 4.9553 5.4356 -0.0016 9 6 5.8201 6.6977 -0.0033 10 6 6.7042 6.7121 1.2453 11 6 6.7025 6.7097 -1.2531 12 6 4.9318 7.9152 -0.0033 13 1 3.8580 7.8002 -0.0025 14 6 5.4902 9.1759 -0.0052 15 7 6.7978 9.3159 -0.0067 16 14 4.3892 10.6850 -0.0059 17 1 3.5331 10.6737 1.2074 18 1 5.2286 11.9100 -0.0075 19 1 3.5308 10.6708 -1.2176 20 6 6.0618 1.8369 0.0011 21 9 7.4080 1.9512 0.0007 22 6 5.4668 0.5929 -0.0031 23 7 4.1510 0.4706 0.0016 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.2169 3.6673 -0.0004 30 1 6.7832 4.3554 -0.0013 31 1 4.3257 5.4257 -0.8913 32 1 4.3264 5.4268 0.8887 33 1 7.3466 5.8315 1.2457 34 1 7.3199 7.6115 1.2442 35 1 6.0755 6.7035 2.1358 36 1 6.0726 6.6995 -2.1427 37 1 7.3182 7.6090 -1.2547 38 1 7.3449 5.8291 -1.2528 39 1 7.1906 10.2028 -0.0077 40 1 6.0842 -0.2931 -0.0068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596263444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -73.663534 kcal Electronic energy + Delta-G solvation = -22159.254046 eV Core-core repulsion = 18694.932241 eV Total energy + Delta-G solvation = -3464.321805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.73698 -41.53996 -39.47251 -38.43379 -36.02617 -33.37772 -32.88650 -30.88504 -30.47458 -27.62138 -27.56486 -26.79756 -24.59502 -24.19562 -22.81459 -20.62555 -19.78335 -18.82065 -18.41820 -17.81206 -17.33186 -16.78117 -16.57409 -16.22686 -16.05828 -15.51900 -15.38466 -15.11290 -14.61467 -14.57213 -14.36929 -14.08399 -13.54384 -13.51290 -13.20272 -13.09103 -13.02429 -12.80128 -12.61505 -12.43213 -12.38869 -12.14168 -11.84526 -11.60667 -11.35970 -11.22608 -10.78691 -10.67854 -10.39943 -9.49720 -8.80292 -8.03210 -6.20061 0.05854 0.35425 1.44996 1.46291 1.52402 1.93295 2.35293 2.51234 2.67500 3.15615 3.21023 3.36335 3.90323 4.04268 4.15702 4.21705 4.32105 4.47409 4.48900 4.53949 4.57528 4.67431 4.83124 4.89730 4.94842 5.00436 5.00698 5.08164 5.14425 5.23723 5.35312 5.41663 5.61638 5.65365 5.99755 6.08309 6.17667 6.28976 6.38935 6.56991 6.81939 6.86021 7.48469 8.95882 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.004154 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.011702 B = 6738.728948 C = 7996.075278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.317 6.317 4 C 0.349 3.651 5 C -0.267 4.267 6 C 0.255 3.745 7 N -0.711 5.711 8 C 0.145 3.855 9 C 0.052 3.948 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.527 4.527 13 H 0.054 0.946 14 C 0.026 3.974 15 N -0.903 5.903 16 Si 0.947 3.053 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.084 4.084 21 F -0.141 7.141 22 C 0.161 3.839 23 N -0.567 5.567 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.143 0.857 30 H 0.407 0.593 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.259 0.741 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 -17.436 -0.003 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.224 6.224 4 C 0.172 3.828 5 C -0.294 4.294 6 C 0.138 3.862 7 N -0.337 5.337 8 C 0.022 3.978 9 C 0.052 3.948 10 C -0.180 4.180 11 C -0.180 4.180 12 C -0.565 4.565 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.542 5.542 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.112 4.112 21 F -0.120 7.120 22 C 0.006 3.994 23 N -0.295 5.295 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.244 0.756 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.659 -17.704 0.000 18.915 hybrid contribution 0.686 1.949 -0.001 2.067 sum -5.973 -15.755 -0.001 16.849 Atomic orbital electron populations 1.21848 0.91268 1.04273 1.03190 1.22840 0.96070 0.79844 1.02642 1.86242 1.16347 1.32434 1.87393 1.19449 0.84344 0.89123 0.89922 1.20290 0.92685 0.97088 1.19360 1.18051 0.91997 0.85701 0.90468 1.45021 1.09747 1.01955 1.76938 1.21538 0.92904 0.83565 0.99843 1.18322 0.92923 0.90715 0.92871 1.21685 0.99031 0.99982 0.97265 1.21682 0.99033 0.99984 0.97265 1.21254 0.92869 0.91167 1.51240 0.92762 1.25512 0.96052 1.01176 0.94664 1.69925 1.10460 1.23131 1.50675 0.85778 0.78967 0.79240 0.78606 1.19994 1.21294 1.19983 1.18166 0.77690 0.94320 1.21013 1.91432 1.28418 1.96734 1.95451 1.22598 0.89671 0.95659 0.91503 1.67488 1.05187 1.31904 1.24893 0.91829 0.87953 0.91824 0.91451 0.91456 0.83970 0.75577 0.92837 0.92834 0.95501 0.92041 0.95873 0.95874 0.92039 0.95497 0.93111 0.78317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.06 1.20 6.03 71.98 0.43 1.63 16 3 O -0.32 -8.56 10.12 -90.51 -0.92 -9.48 16 4 C 0.35 10.22 7.48 84.72 0.63 10.86 16 5 C -0.27 -8.39 9.31 22.58 0.21 -8.18 16 6 C 0.25 8.18 6.70 38.54 0.26 8.43 16 7 N -0.71 -24.61 5.13 -338.76 -1.74 -26.34 16 8 C 0.14 5.62 3.78 86.38 0.33 5.94 16 9 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 10 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 11 C -0.12 -5.50 8.08 71.98 0.58 -4.91 16 12 C -0.53 -26.82 8.01 25.60 0.21 -26.61 16 13 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 14 C 0.03 1.33 5.15 84.65 0.44 1.76 16 15 N -0.90 -48.32 9.35 21.45 0.20 -48.12 16 16 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 C -0.08 -2.43 7.35 22.56 0.17 -2.26 16 21 F -0.14 -4.13 16.76 44.97 0.75 -3.38 16 22 C 0.16 3.93 11.15 84.56 0.94 4.87 16 23 N -0.57 -15.18 9.21 -309.03 -2.85 -18.03 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 28 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 29 H 0.14 4.52 6.89 -2.91 -0.02 4.50 16 30 H 0.41 14.13 5.75 -92.71 -0.53 13.59 16 31 H 0.05 2.08 7.99 -2.39 -0.02 2.07 16 32 H 0.05 2.09 7.99 -2.39 -0.02 2.07 16 33 H 0.03 1.06 6.86 -2.39 -0.02 1.05 16 34 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 35 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 38 H 0.03 1.06 6.86 -2.39 -0.02 1.05 16 39 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 40 H 0.20 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -55.32 328.84 3.49 -51.83 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.52 Total: 22.21 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 5.49 Total: -12.41 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -4.38 Total: -92.49 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.92 Total: -9.48 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.75 Total: -3.38 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -55.32 3.49 -51.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596263444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.829 kcal (2) G-P(sol) polarization free energy of solvation -55.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds