Wall clock time and date at job start Tue Mar 31 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35984 * 117.00584 * 2 1 4 4 C 1.40150 * 125.84336 * 180.02562 * 3 2 1 5 5 C 1.36066 * 107.82245 * 180.02562 * 4 3 2 6 6 N 1.39478 * 126.21710 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00331 * 359.97438 * 6 5 4 8 8 O 1.21588 * 119.99405 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00265 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00365 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47549 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47278 * 300.00302 * 11 10 9 13 13 C 1.53002 * 109.46695 * 60.00494 * 11 10 9 14 14 C 1.50699 * 109.47007 * 180.02562 * 11 10 9 15 15 H 1.07997 * 120.00463 * 357.00456 * 14 11 10 16 16 C 1.37877 * 119.99903 * 177.00938 * 14 11 10 17 17 N 1.31518 * 119.99824 * 5.54118 * 16 14 11 18 18 Si 1.86798 * 120.00235 * 185.54285 * 16 14 11 19 19 H 1.48499 * 109.47027 * 85.00091 * 18 16 14 20 20 H 1.48498 * 109.47106 * 205.00041 * 18 16 14 21 21 H 1.48498 * 109.46793 * 324.99943 * 18 16 14 22 22 N 1.35799 * 107.56154 * 0.25443 * 5 4 3 23 23 H 0.97008 * 126.04090 * 179.73520 * 22 5 4 24 24 N 1.31106 * 125.83515 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.47328 * 300.00314 * 1 2 3 26 26 H 1.09002 * 109.47059 * 59.99691 * 1 2 3 27 27 H 1.08994 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.07999 * 126.08778 * 0.03221 * 4 3 2 29 29 H 0.97003 * 120.00268 * 179.71775 * 6 5 4 30 30 H 0.97008 * 119.99980 * 0.02562 * 9 7 6 31 31 H 1.09003 * 109.47511 * 300.00481 * 10 9 7 32 32 H 1.09002 * 109.46699 * 60.00459 * 10 9 7 33 33 H 1.09007 * 109.46563 * 53.93156 * 12 11 10 34 34 H 1.08999 * 109.47011 * 173.92537 * 12 11 10 35 35 H 1.08993 * 109.46740 * 293.93581 * 12 11 10 36 36 H 1.08993 * 109.47479 * 59.99795 * 13 11 10 37 37 H 1.08999 * 109.46744 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46856 * 299.99588 * 13 11 10 39 39 H 0.97004 * 120.00367 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.4269 -0.0005 5 6 3.6438 2.7708 0.0003 6 7 4.8840 3.4091 -0.0004 7 6 6.0173 2.6797 -0.0014 8 8 5.9586 1.4652 -0.0023 9 7 7.2157 3.2964 -0.0026 10 6 8.4475 2.5036 -0.0032 11 6 9.6571 3.4406 -0.0038 12 6 9.6180 4.3230 -1.2531 13 6 9.6192 4.3230 1.2455 14 6 10.9243 2.6249 -0.0050 15 1 10.8729 1.5472 0.0436 16 6 12.1493 3.2545 -0.0681 17 7 12.2175 4.5669 -0.0173 18 14 13.7121 2.2434 -0.2258 19 1 13.9580 1.9322 -1.6569 20 1 14.8583 3.0160 0.3168 21 1 13.5622 0.9783 0.5372 22 7 2.4290 3.3778 0.0070 23 1 2.2690 4.3345 0.0127 24 7 1.4480 2.3781 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.1939 0.6622 -0.0015 29 1 4.9308 4.3780 -0.0039 30 1 7.2625 4.2653 -0.0023 31 1 8.4757 1.8752 0.8870 32 1 8.4743 1.8746 -0.8930 33 1 8.6555 4.8317 -1.3085 34 1 10.4172 5.0624 -1.2008 35 1 9.7532 3.7037 -2.1397 36 1 9.6471 3.6944 2.1354 37 1 10.4807 4.9908 1.2447 38 1 8.7027 4.9130 1.2458 39 1 13.0794 5.0099 -0.0613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599851329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:54 Heat of formation + Delta-G solvation = 17.918778 kcal Electronic energy + Delta-G solvation = -21916.253934 eV Core-core repulsion = 18475.823397 eV Total energy + Delta-G solvation = -3440.430537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54548 -39.80801 -38.19769 -36.63113 -34.63666 -33.44396 -31.00162 -30.84585 -28.95039 -27.34635 -25.80196 -25.70526 -24.95929 -22.16440 -21.62098 -20.32099 -19.23074 -18.84521 -17.75648 -16.87486 -16.19490 -15.97028 -15.64759 -15.45259 -14.79344 -14.70025 -14.16126 -13.94208 -13.80823 -13.34635 -13.03256 -12.94112 -12.26618 -12.10972 -11.71818 -11.48810 -11.25858 -10.93114 -10.78453 -10.71707 -10.68925 -10.43557 -10.25633 -9.84863 -9.70225 -9.41646 -8.86493 -8.76277 -8.65759 -8.41228 -8.05859 -6.07507 -4.16387 1.75682 2.03085 2.73998 2.82981 3.27032 3.33705 3.37274 3.44122 3.55046 4.29544 4.41689 4.72661 5.10931 5.11427 5.20191 5.36471 5.45322 5.60723 5.95738 6.08531 6.25895 6.39800 6.49080 6.65408 6.73231 6.75605 6.90301 6.92874 6.95089 7.18207 7.28849 7.34444 7.48907 7.64684 7.66221 7.93086 8.02346 8.13495 8.32562 8.66912 8.84188 9.49519 10.94647 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042392 B = 0.003028 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.343990 B = 9244.753520 C = 9707.051570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.288 6.288 3 C 0.279 3.721 4 C -0.283 4.283 5 C 0.362 3.638 6 N -0.666 5.666 7 C 0.703 3.297 8 O -0.561 6.561 9 N -0.721 5.721 10 C 0.148 3.852 11 C 0.057 3.943 12 C -0.130 4.130 13 C -0.131 4.131 14 C -0.508 4.508 15 H 0.059 0.941 16 C 0.068 3.932 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 N -0.487 5.487 23 H 0.438 0.562 24 N -0.346 5.346 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.182 0.818 29 H 0.408 0.592 30 H 0.397 0.603 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.005 0.995 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.004 0.996 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.682 1.117 -0.026 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.192 6.192 3 C 0.074 3.926 4 C -0.315 4.315 5 C 0.140 3.860 6 N -0.317 5.317 7 C 0.402 3.598 8 O -0.436 6.436 9 N -0.375 5.375 10 C 0.026 3.974 11 C 0.056 3.944 12 C -0.187 4.187 13 C -0.189 4.189 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.134 4.134 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 N -0.207 5.207 23 H 0.283 0.717 24 N -0.188 5.188 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.200 0.800 29 H 0.243 0.757 30 H 0.232 0.768 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.024 0.976 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.023 0.977 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.445 0.324 -0.023 18.448 hybrid contribution 1.305 0.849 -0.104 1.560 sum -17.140 1.173 -0.128 17.180 Atomic orbital electron populations 1.22951 0.77949 1.03385 1.01970 1.86324 1.21812 1.21675 1.89353 1.20353 0.91504 0.84939 0.95789 1.20890 0.93778 0.94434 1.22364 1.17554 0.79611 0.90319 0.98566 1.42082 1.02174 1.09982 1.77427 1.15781 0.79922 0.85416 0.78632 1.90872 1.85192 1.11347 1.56203 1.45529 1.04276 1.10610 1.77071 1.21742 0.80700 0.94033 1.00964 1.18375 0.90852 0.92346 0.92838 1.21820 0.98503 1.00550 0.97868 1.21862 0.99548 0.99785 0.97683 1.20950 0.89715 0.92967 1.51055 0.92267 1.24872 0.98917 0.94932 0.94674 1.69819 1.24887 1.07567 1.50116 0.86580 0.82611 0.80248 0.78413 1.20592 1.21351 1.19893 1.45680 1.00819 1.08292 1.65917 0.71715 1.77383 1.10809 0.95041 1.35583 0.92587 0.92596 0.88345 0.80047 0.75722 0.76810 0.92361 0.92318 0.97570 0.89965 0.95029 0.95298 0.89541 0.97680 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.69 101.05 1.08 1.39 16 2 O -0.29 -3.93 10.58 -19.69 -0.21 -4.14 16 3 C 0.28 4.15 7.88 -17.14 -0.14 4.01 16 4 C -0.28 -4.51 9.66 -39.64 -0.38 -4.89 16 5 C 0.36 4.84 8.10 -152.68 -1.24 3.60 16 6 N -0.67 -8.02 5.43 -15.73 -0.09 -8.10 16 7 C 0.70 11.35 8.53 -86.92 -0.74 10.61 16 8 O -0.56 -11.11 13.47 5.29 0.07 -11.04 16 9 N -0.72 -11.54 4.91 -65.23 -0.32 -11.86 16 10 C 0.15 2.93 4.50 -4.04 -0.02 2.91 16 11 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 12 C -0.13 -2.75 8.03 37.16 0.30 -2.46 16 13 C -0.13 -2.79 8.11 37.16 0.30 -2.49 16 14 C -0.51 -12.83 8.01 -34.44 -0.28 -13.11 16 15 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 16 C 0.07 1.73 5.13 -17.82 -0.09 1.64 16 17 N -0.89 -22.93 9.45 55.43 0.52 -22.41 16 18 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 N -0.49 -5.41 7.39 31.24 0.23 -5.18 16 23 H 0.44 3.11 8.96 -182.62 -1.64 1.48 16 24 N -0.35 -4.67 12.08 30.53 0.37 -4.31 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.18 3.29 5.82 -52.49 -0.31 2.98 16 29 H 0.41 3.25 8.84 -40.82 -0.36 2.89 16 30 H 0.40 5.49 6.17 -40.82 -0.25 5.23 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.01 0.10 6.71 -51.93 -0.35 -0.25 16 34 H 0.08 1.94 6.25 -51.93 -0.32 1.61 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.06 6.11 -51.93 -0.32 1.75 16 38 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 39 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -30.07 322.09 -7.27 -37.34 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.40 Total: 7.21 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.28 Total: 2.38 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.72 Total: -51.85 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.14 Total: -15.18 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.07 -7.27 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599851329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.257 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds