Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99293 * 2 1 4 4 C 1.53002 * 109.46458 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47540 * 64.99758 * 4 3 2 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 3 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46988 * 90.00142 * 11 9 7 13 13 H 1.48502 * 109.47218 * 209.99962 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00116 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 3 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47348 * 179.72561 * 17 15 5 19 19 C 1.50696 * 109.46969 * 179.97438 * 18 17 15 20 20 C 1.35342 * 126.91770 * 274.68378 * 19 18 17 21 21 N 1.33773 * 106.50144 * 179.90540 * 20 19 18 22 22 N 1.28632 * 108.88379 * 0.37274 * 21 20 19 23 23 N 1.28723 * 110.17619 * 359.76147 * 22 21 20 24 24 H 0.97000 * 125.86339 * 180.02562 * 23 22 21 25 25 H 1.09006 * 109.47129 * 60.01057 * 1 2 3 26 26 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47497 * 300.00409 * 1 2 3 28 28 H 1.08992 * 109.47765 * 59.99913 * 3 2 1 29 29 H 1.08997 * 109.46796 * 299.99300 * 3 2 1 30 30 H 1.08999 * 109.47326 * 304.98940 * 4 3 2 31 31 H 1.09006 * 109.46825 * 184.99782 * 4 3 2 32 32 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 33 33 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 34 34 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46564 * 299.73030 * 17 15 5 36 36 H 1.08998 * 109.47012 * 59.72084 * 17 15 5 37 37 H 1.09000 * 109.46986 * 300.00089 * 18 17 15 38 38 H 1.09002 * 109.46857 * 60.00224 * 18 17 15 39 39 H 1.08008 * 126.75273 * 0.04430 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2507 6 6 4.1064 -0.8925 -1.3400 7 6 5.5018 -1.2980 -0.9408 8 1 6.2201 -0.5460 -0.6494 9 6 5.8612 -2.6290 -0.9467 10 7 4.9864 -3.5448 -1.3011 11 14 7.5908 -3.1317 -0.4512 12 1 7.6332 -3.3831 1.0117 13 1 7.9738 -4.3691 -1.1774 14 1 8.5402 -2.0425 -0.7941 15 6 4.2634 1.3329 -2.3199 16 8 4.6335 0.8194 -3.3544 17 6 4.1295 2.8312 -2.2282 18 6 4.5191 3.4609 -3.5671 19 6 4.3846 4.9591 -3.4755 20 6 3.2616 5.6881 -3.6739 21 7 3.6022 6.9684 -3.4889 22 7 4.8549 7.0289 -3.2031 23 7 5.3636 5.8466 -3.1844 24 1 6.2895 5.6293 -2.9939 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8465 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.8507 0.5688 0.8428 31 1 3.9783 2.1767 0.0902 32 1 3.3859 -1.3631 -0.6711 33 1 3.9140 -1.2123 -2.3641 34 1 5.2391 -4.4813 -1.3049 35 1 3.0974 3.0898 -1.9916 36 1 4.7871 3.2075 -1.4446 37 1 5.5512 3.2022 -3.8036 38 1 3.8614 3.0846 -4.3506 39 1 2.2825 5.3103 -3.9290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601035746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = 7.526692 kcal Electronic energy + Delta-G solvation = -22225.023629 eV Core-core repulsion = 18784.142458 eV Total energy + Delta-G solvation = -3440.881171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.43912 -39.31901 -37.57429 -35.03191 -34.38802 -33.28578 -32.65956 -30.14850 -29.55914 -27.28477 -25.99919 -24.95126 -23.10818 -22.78123 -22.47220 -21.49864 -18.48932 -18.33560 -16.84027 -16.48953 -16.34981 -16.00025 -15.61275 -15.29774 -15.05055 -14.67148 -14.30997 -14.23442 -13.98222 -13.20969 -12.92858 -12.52158 -12.19220 -12.03204 -11.89833 -11.75078 -11.66614 -11.41332 -11.22380 -10.95732 -10.89384 -10.85114 -10.72854 -10.43638 -10.15358 -9.61852 -9.47787 -9.38598 -8.93486 -8.39662 -7.68603 -6.00962 -4.05475 1.39270 2.39625 2.58690 3.29217 3.30477 3.36944 3.40423 3.80684 4.00642 4.33298 4.46335 4.56641 4.82330 4.94444 5.06830 5.13358 5.23334 5.30089 5.32359 5.34825 5.44119 5.51108 5.51883 5.56117 5.68649 5.82928 5.90213 5.91197 6.02336 6.17217 6.66436 7.17999 7.35977 7.51809 7.58157 7.96127 8.27802 8.28544 8.41074 8.89426 9.05056 9.58597 11.07050 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.004620 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.705453 B = 6058.659969 C = 7431.981322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.587 5.587 6 C 0.249 3.751 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.502 3.498 16 O -0.541 6.541 17 C -0.138 4.138 18 C -0.035 4.035 19 C 0.002 3.998 20 C -0.051 4.051 21 N -0.268 5.268 22 N -0.089 5.089 23 N -0.390 5.390 24 H 0.448 0.552 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 14.252 1.302 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.034 4.034 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.130 3.870 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.288 3.712 16 O -0.419 6.419 17 C -0.179 4.179 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.208 4.208 21 N -0.135 5.135 22 N -0.069 5.069 23 N -0.111 5.111 24 H 0.294 0.706 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.092 15.151 0.891 16.009 hybrid contribution 1.068 -1.393 0.439 1.809 sum -4.025 13.758 1.330 14.396 Atomic orbital electron populations 1.22708 0.81953 1.02658 0.99156 1.88108 1.18796 1.26850 1.95140 1.23104 0.95251 0.85519 0.99574 1.21526 0.91280 0.98925 0.89675 1.48182 1.63844 1.09997 1.09759 1.19324 0.96731 0.72006 0.98919 1.21443 0.97485 0.92200 1.45456 0.92731 1.24910 0.97323 0.96439 0.95356 1.69944 1.34329 1.00974 1.47888 0.86547 0.84675 0.78069 0.78370 1.20701 1.21133 1.20051 1.20192 0.78625 0.88077 0.84259 1.90687 1.46749 1.74967 1.29488 1.21753 1.03607 0.94514 0.98056 1.19930 1.05136 0.83756 0.98642 1.22485 0.89292 0.95506 1.05907 1.23432 1.00184 0.89368 1.07809 1.75077 1.03912 1.19711 1.14821 1.78270 1.04929 1.03756 1.19932 1.45161 1.13131 1.05374 1.47440 0.70647 0.94534 0.89733 0.94658 0.93066 0.93665 0.88933 0.90169 0.93614 0.94239 0.92805 0.89105 0.89543 0.89348 0.87767 0.79235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.08 9.53 -35.23 -0.34 -6.41 16 3 C 0.04 0.57 6.28 37.16 0.23 0.81 16 4 C 0.11 1.65 5.62 -4.05 -0.02 1.63 16 5 N -0.59 -11.63 2.42 -175.06 -0.42 -12.05 16 6 C 0.25 6.40 4.98 -5.19 -0.03 6.38 16 7 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 8 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 11 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.50 9.29 7.67 -10.98 -0.08 9.21 16 16 O -0.54 -12.42 15.56 5.56 0.09 -12.33 16 17 C -0.14 -1.64 4.24 -27.88 -0.12 -1.76 16 18 C -0.03 -0.37 5.07 -27.89 -0.14 -0.51 16 19 C 0.00 0.02 6.56 -82.09 -0.54 -0.52 16 20 C -0.05 -0.55 11.99 -17.74 -0.21 -0.76 16 21 N -0.27 -3.53 12.41 30.24 0.38 -3.16 16 22 N -0.09 -1.10 13.38 60.35 0.81 -0.30 16 23 N -0.39 -3.73 6.98 33.54 0.23 -3.50 16 24 H 0.45 2.81 8.96 -190.40 -1.71 1.10 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.55 7.31 -51.93 -0.38 0.17 16 30 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 31 H 0.08 0.91 6.43 -51.93 -0.33 0.57 16 32 H 0.05 1.24 7.11 -51.93 -0.37 0.87 16 33 H 0.04 1.16 7.43 -51.93 -0.39 0.77 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 0.91 7.28 -51.93 -0.38 0.53 16 36 H 0.09 0.89 7.39 -51.93 -0.38 0.51 16 37 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 39 H 0.19 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -35.83 335.61 -5.56 -41.39 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.86 Total: -2.18 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.22 Total: 2.62 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 1.73 Total: -44.74 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.25 Total: -18.75 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.83 -5.56 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601035746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.916 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds