Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99293 * 2 1 4 4 C 1.53002 * 109.46458 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47540 * 64.99758 * 4 3 2 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 3 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46988 * 90.00142 * 11 9 7 13 13 H 1.48502 * 109.47218 * 209.99962 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00116 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 3 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47348 * 179.72561 * 17 15 5 19 19 C 1.50696 * 109.46969 * 179.97438 * 18 17 15 20 20 C 1.35342 * 126.91770 * 274.68378 * 19 18 17 21 21 N 1.33773 * 106.50144 * 179.90540 * 20 19 18 22 22 N 1.28632 * 108.88379 * 0.37274 * 21 20 19 23 23 N 1.28723 * 110.17619 * 359.76147 * 22 21 20 24 24 H 0.97000 * 125.86339 * 180.02562 * 23 22 21 25 25 H 1.09006 * 109.47129 * 60.01057 * 1 2 3 26 26 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47497 * 300.00409 * 1 2 3 28 28 H 1.08992 * 109.47765 * 59.99913 * 3 2 1 29 29 H 1.08997 * 109.46796 * 299.99300 * 3 2 1 30 30 H 1.08999 * 109.47326 * 304.98940 * 4 3 2 31 31 H 1.09006 * 109.46825 * 184.99782 * 4 3 2 32 32 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 33 33 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 34 34 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46564 * 299.73030 * 17 15 5 36 36 H 1.08998 * 109.47012 * 59.72084 * 17 15 5 37 37 H 1.09000 * 109.46986 * 300.00089 * 18 17 15 38 38 H 1.09002 * 109.46857 * 60.00224 * 18 17 15 39 39 H 1.08008 * 126.75273 * 0.04430 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2507 6 6 4.1064 -0.8925 -1.3400 7 6 5.5018 -1.2980 -0.9408 8 1 6.2201 -0.5460 -0.6494 9 6 5.8612 -2.6290 -0.9467 10 7 4.9864 -3.5448 -1.3011 11 14 7.5908 -3.1317 -0.4512 12 1 7.6332 -3.3831 1.0117 13 1 7.9738 -4.3691 -1.1774 14 1 8.5402 -2.0425 -0.7941 15 6 4.2634 1.3329 -2.3199 16 8 4.6335 0.8194 -3.3544 17 6 4.1295 2.8312 -2.2282 18 6 4.5191 3.4609 -3.5671 19 6 4.3846 4.9591 -3.4755 20 6 3.2616 5.6881 -3.6739 21 7 3.6022 6.9684 -3.4889 22 7 4.8549 7.0289 -3.2031 23 7 5.3636 5.8466 -3.1844 24 1 6.2895 5.6293 -2.9939 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8465 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.8507 0.5688 0.8428 31 1 3.9783 2.1767 0.0902 32 1 3.3859 -1.3631 -0.6711 33 1 3.9140 -1.2123 -2.3641 34 1 5.2391 -4.4813 -1.3049 35 1 3.0974 3.0898 -1.9916 36 1 4.7871 3.2075 -1.4446 37 1 5.5512 3.2022 -3.8036 38 1 3.8614 3.0846 -4.3506 39 1 2.2825 5.3103 -3.9290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601035746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -19.773630 kcal Electronic energy + Delta-G solvation = -22226.207460 eV Core-core repulsion = 18784.142458 eV Total energy + Delta-G solvation = -3442.065002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.26887 -40.76703 -38.72319 -36.54631 -35.44691 -34.71423 -34.09816 -31.38099 -30.74081 -28.95234 -27.05655 -26.27549 -24.37358 -23.96181 -23.69930 -22.45345 -19.86727 -19.20740 -18.60319 -18.02019 -17.47941 -16.97007 -16.93807 -16.69624 -16.29344 -15.98326 -15.66388 -15.20448 -15.05756 -14.57529 -14.23737 -13.95708 -13.62131 -13.40711 -13.06978 -12.97097 -12.82920 -12.76934 -12.64333 -12.49104 -12.28104 -12.15842 -11.90123 -11.75811 -11.64427 -11.56228 -10.62313 -10.59014 -10.48713 -10.10495 -9.35892 -8.16530 -6.31237 0.57498 1.38000 1.40638 1.50511 1.55681 1.87117 1.89441 2.34497 2.50177 3.01712 3.13292 3.43036 3.69859 3.91021 4.03133 4.09795 4.20390 4.31012 4.32308 4.44936 4.50830 4.56509 4.59389 4.63395 4.67426 4.89827 5.01204 5.03359 5.08467 5.23581 5.26322 5.34193 5.62509 5.91708 5.99117 6.13682 6.39068 6.77861 6.89732 7.34001 7.44861 7.54907 8.90399 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.004620 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.705453 B = 6058.659969 C = 7431.981322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.043 3.957 4 C 0.105 3.895 5 N -0.596 5.596 6 C 0.271 3.729 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.966 3.034 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.494 3.506 16 O -0.596 6.596 17 C -0.121 4.121 18 C -0.025 4.025 19 C 0.011 3.989 20 C -0.050 4.050 21 N -0.299 5.299 22 N -0.109 5.109 23 N -0.375 5.375 24 H 0.461 0.539 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.024 0.976 33 H -0.011 1.011 34 H 0.265 0.735 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 16.254 2.507 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.034 4.034 4 C -0.018 4.018 5 N -0.326 5.326 6 C 0.149 3.851 7 C -0.579 4.579 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.570 5.570 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.284 3.716 16 O -0.478 6.478 17 C -0.161 4.161 18 C -0.065 4.065 19 C -0.123 4.123 20 C -0.208 4.208 21 N -0.166 5.166 22 N -0.089 5.089 23 N -0.098 5.098 24 H 0.310 0.690 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.042 0.958 33 H 0.007 0.993 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.783 17.215 2.137 17.994 hybrid contribution 0.923 -2.030 0.047 2.231 sum -3.860 15.184 2.184 15.819 Atomic orbital electron populations 1.22842 0.80111 1.02954 1.00861 1.88051 1.21080 1.29163 1.95536 1.23217 0.93502 0.84753 1.01968 1.21876 0.93197 1.00220 0.86519 1.48141 1.64329 1.07833 1.12268 1.18613 0.95295 0.76154 0.95045 1.21775 0.98390 0.92550 1.45212 0.92670 1.25858 1.01695 0.96523 0.95235 1.70083 1.36577 1.01356 1.48954 0.85442 0.79272 0.77604 0.78621 1.19149 1.20903 1.19427 1.21330 0.76814 0.90726 0.82778 1.90659 1.48987 1.76637 1.31492 1.21709 1.06178 0.88668 0.99585 1.19768 1.04807 0.83986 0.97953 1.22260 0.89247 0.94829 1.06011 1.23904 1.01411 0.88611 1.06863 1.75070 1.04377 1.21095 1.16034 1.78237 1.05065 1.04724 1.20858 1.45187 1.13817 1.04658 1.46169 0.69035 0.93502 0.90360 0.92105 0.89369 0.92223 0.90958 0.85595 0.95789 0.99256 0.92641 0.86081 0.86836 0.89867 0.88149 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.90 16 2 O -0.42 -13.55 9.53 -148.98 -1.42 -14.97 16 3 C 0.04 1.01 6.28 71.98 0.45 1.46 16 4 C 0.10 2.92 5.62 86.38 0.49 3.41 16 5 N -0.60 -23.56 2.42 -826.15 -2.00 -25.56 16 6 C 0.27 14.55 4.98 85.63 0.43 14.98 16 7 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.32 5.46 84.65 0.46 0.78 16 10 N -0.93 -56.93 13.29 21.44 0.28 -56.65 16 11 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C 0.49 17.95 7.67 87.66 0.67 18.62 16 16 O -0.60 -28.04 15.56 -3.04 -0.05 -28.08 16 17 C -0.12 -2.48 4.24 29.85 0.13 -2.35 16 18 C -0.03 -0.48 5.07 29.85 0.15 -0.32 16 19 C 0.01 0.19 6.56 41.35 0.27 0.47 16 20 C -0.05 -0.93 11.99 83.73 1.00 0.07 16 21 N -0.30 -7.27 12.41 -58.26 -0.72 -8.00 16 22 N -0.11 -2.49 13.38 37.02 0.50 -2.00 16 23 N -0.38 -6.19 6.98 -47.80 -0.33 -6.52 16 24 H 0.46 4.57 8.96 -219.95 -1.97 2.60 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 26 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.23 7.31 -2.39 -0.02 1.21 16 30 H 0.07 2.31 8.07 -2.39 -0.02 2.30 16 31 H 0.13 2.31 6.43 -2.38 -0.02 2.29 16 32 H 0.02 1.38 7.11 -2.39 -0.02 1.36 16 33 H -0.01 -0.67 7.43 -2.39 -0.02 -0.69 16 34 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 35 H 0.12 1.83 7.28 -2.39 -0.02 1.82 16 36 H 0.11 1.79 7.39 -2.39 -0.02 1.78 16 37 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.10 2.04 8.10 -2.39 -0.02 2.02 16 39 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -82.45 335.61 2.92 -79.53 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -0.91 Total: 7.17 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.54 Total: 8.38 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -2.27 Total: -98.72 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.47 Total: -43.05 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -82.45 2.92 -79.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601035746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.757 kcal (2) G-P(sol) polarization free energy of solvation -82.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds