Wall clock time and date at job start Tue Mar 31 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46781 * 2 1 4 4 C 1.52999 * 109.46999 * 240.00226 * 2 1 3 5 5 C 1.50697 * 109.47069 * 120.00101 * 2 1 3 6 6 C 1.34382 * 126.52101 * 359.97438 * 5 2 1 7 7 N 1.34365 * 108.34454 * 180.02562 * 6 5 2 8 8 C 1.31269 * 109.30477 * 0.02562 * 7 6 5 9 9 S 1.76206 * 125.80182 * 179.97438 * 8 7 6 10 10 C 1.81000 * 99.99929 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.46638 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47317 * 300.00032 * 11 10 9 13 13 C 1.52997 * 109.47269 * 60.00376 * 11 10 9 14 14 C 1.50706 * 109.46953 * 180.02562 * 11 10 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 N 1.36115 * 108.39494 * 0.24042 * 8 7 6 23 23 H 0.96998 * 126.49899 * 179.75671 * 22 8 7 24 24 H 1.09002 * 109.47339 * 299.99413 * 1 2 3 25 25 H 1.08997 * 109.47155 * 60.00087 * 1 2 3 26 26 H 1.09003 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47008 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47658 * 300.00166 * 3 2 1 29 29 H 1.09004 * 109.47429 * 60.00095 * 3 2 1 30 30 H 1.08996 * 109.47319 * 299.99421 * 4 2 1 31 31 H 1.08998 * 109.46964 * 60.00125 * 4 2 1 32 32 H 1.09003 * 109.46850 * 179.97438 * 4 2 1 33 33 H 1.08001 * 125.83181 * 0.05825 * 6 5 2 34 34 H 1.09000 * 109.47216 * 300.00172 * 10 9 8 35 35 H 1.09001 * 109.46620 * 60.00275 * 10 9 8 36 36 H 1.09002 * 109.47153 * 60.00359 * 12 11 10 37 37 H 1.09001 * 109.46832 * 180.02562 * 12 11 10 38 38 H 1.08992 * 109.47303 * 299.99871 * 12 11 10 39 39 H 1.09000 * 109.47140 * 59.99453 * 13 11 10 40 40 H 1.09001 * 109.47375 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47497 * 299.99829 * 13 11 10 42 42 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.2807 -1.2670 2.1954 7 7 2.1014 -1.7986 3.1169 8 6 3.3474 -1.5918 2.7593 9 16 4.7755 -2.1068 3.6538 10 6 3.9862 -2.9215 5.0642 11 6 5.0619 -3.4652 6.0065 12 6 5.9338 -4.4746 5.2570 13 6 5.9329 -2.3109 6.5063 14 6 4.4047 -4.1440 7.1806 15 1 3.3276 -4.1840 7.2477 16 6 5.1786 -4.7141 8.1692 17 7 6.4903 -4.6658 8.0873 18 14 4.3640 -5.5549 9.6248 19 1 2.8882 -5.4737 9.4810 20 1 4.7789 -6.9801 9.6689 21 1 4.7773 -4.8798 10.8812 22 7 3.3486 -0.9067 1.5832 23 1 4.1289 -0.6144 1.0865 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.2012 -1.2846 2.2249 34 1 3.3646 -2.2025 5.5979 35 1 3.3660 -3.7441 4.7081 36 1 6.4091 -3.9839 4.4076 37 1 6.6998 -4.8622 5.9285 38 1 5.3133 -5.2969 4.9010 39 1 5.3118 -1.5918 7.0403 40 1 6.6990 -2.6982 7.1780 41 1 6.4083 -1.8202 5.6570 42 1 7.0348 -5.0671 8.7825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601097595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:12 Heat of formation + Delta-G solvation = 25.910002 kcal Electronic energy + Delta-G solvation = -20001.440927 eV Core-core repulsion = 17107.650130 eV Total energy + Delta-G solvation = -2893.790797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73577 -36.90058 -35.96187 -32.26484 -31.48248 -28.94767 -27.55331 -27.42729 -26.12539 -25.65273 -25.09405 -22.45712 -21.21419 -19.83129 -19.02604 -17.69471 -15.94620 -15.56360 -15.15481 -14.77696 -14.66503 -14.25643 -14.10850 -13.72348 -13.50259 -13.14347 -12.68972 -12.58558 -12.42462 -12.11839 -11.97259 -11.58106 -11.40733 -11.25446 -11.21460 -11.16357 -10.84469 -10.66326 -10.29177 -10.20485 -9.95300 -9.82175 -9.74789 -9.54311 -9.38712 -8.88207 -8.63183 -8.34678 -6.85943 -5.97702 -4.08022 1.78810 2.08869 2.95137 3.27251 3.30247 3.38567 3.42687 3.46348 4.43593 4.44018 4.54444 4.69952 5.05542 5.26416 5.28789 5.29419 5.32550 5.46657 5.54674 5.59199 5.60120 5.75685 5.87161 5.95587 6.01358 6.13933 6.21851 6.33016 6.61019 6.84234 6.88545 6.95324 7.08004 7.08724 7.33122 7.39551 7.62021 7.74877 8.05909 8.15240 8.18334 8.42418 8.91807 9.57197 11.03592 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.003513 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.045495 B = 7968.341443 C = 8354.110219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.018 4.018 6 C -0.014 4.014 7 N -0.488 5.488 8 C 0.204 3.796 9 S -0.047 6.047 10 C -0.056 4.056 11 C 0.078 3.922 12 C -0.134 4.134 13 C -0.134 4.134 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.557 5.557 23 H 0.416 0.584 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.016 0.984 37 H 0.086 0.914 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.086 0.914 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 9.672 -16.747 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.136 4.136 6 C -0.164 4.164 7 N -0.210 5.210 8 C -0.167 4.167 9 S 0.184 5.816 10 C -0.205 4.205 11 C 0.076 3.924 12 C -0.192 4.192 13 C -0.192 4.192 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.163 5.163 23 H 0.254 0.746 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.707 9.335 -16.156 19.512 hybrid contribution -1.161 -0.050 0.091 1.166 sum -6.869 9.284 -16.065 19.785 Atomic orbital electron populations 1.21833 0.92841 1.02588 1.02265 1.18982 0.96076 0.93961 0.90062 1.21911 1.00772 0.94941 1.02270 1.21910 1.00775 1.00792 0.96407 1.21108 0.83395 1.08606 1.00463 1.22060 0.99334 1.02614 0.92397 1.70882 0.98425 1.23555 1.28182 1.25780 0.99618 1.01276 0.90065 1.85632 1.01297 1.69966 1.24658 1.23994 1.02196 1.01125 0.93145 1.18083 0.90200 0.92711 0.91440 1.21900 1.00984 0.98558 0.97792 1.21900 1.00984 0.96961 0.99388 1.21059 0.93014 1.35383 1.04700 0.92318 1.24883 0.94836 0.95878 0.97920 1.69824 1.03601 1.45069 1.33921 0.86508 0.79752 0.79157 0.82436 1.19738 1.21057 1.21052 1.43204 1.07739 1.45541 1.19836 0.74631 0.91899 0.91976 0.91893 0.93047 0.91987 0.92107 0.92097 0.91998 0.93045 0.81713 0.90190 0.90188 0.96533 0.89525 0.95293 0.95297 0.89521 0.96532 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 7.39 37.16 0.27 -0.79 16 2 C 0.01 0.10 0.99 -155.66 -0.15 -0.06 16 3 C -0.14 -1.14 8.46 37.16 0.31 -0.83 16 4 C -0.14 -1.14 8.46 37.16 0.31 -0.83 16 5 C -0.02 -0.23 5.66 -81.33 -0.46 -0.69 16 6 C -0.01 -0.21 10.82 -17.80 -0.19 -0.41 16 7 N -0.49 -9.17 10.60 -13.45 -0.14 -9.32 16 8 C 0.20 3.58 8.26 -88.75 -0.73 2.85 16 9 S -0.05 -0.88 19.36 -107.50 -2.08 -2.96 16 10 C -0.06 -1.23 4.14 37.16 0.15 -1.07 16 11 C 0.08 1.88 0.52 -155.66 -0.08 1.80 16 12 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 13 C -0.13 -3.20 8.01 37.16 0.30 -2.90 16 14 C -0.50 -13.43 8.01 -34.44 -0.28 -13.70 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.89 -24.10 9.35 55.43 0.52 -23.58 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 N -0.56 -7.68 6.24 -8.98 -0.06 -7.73 16 23 H 0.42 4.63 8.96 -40.82 -0.37 4.26 16 24 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.17 2.10 7.30 -52.49 -0.38 1.72 16 34 H 0.08 1.80 8.14 -51.92 -0.42 1.38 16 35 H 0.08 1.81 8.14 -51.92 -0.42 1.38 16 36 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 37 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 41 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 42 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -28.76 344.02 -9.05 -37.81 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.11 Total: 2.46 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.34 Total: -17.84 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.32 Total: -40.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.08 Total: -2.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.76 -9.05 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601097595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.719 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds