Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46781 * 2 1 4 4 C 1.52999 * 109.46999 * 240.00226 * 2 1 3 5 5 C 1.50697 * 109.47069 * 120.00101 * 2 1 3 6 6 C 1.34382 * 126.52101 * 359.97438 * 5 2 1 7 7 N 1.34365 * 108.34454 * 180.02562 * 6 5 2 8 8 C 1.31269 * 109.30477 * 0.02562 * 7 6 5 9 9 S 1.76206 * 125.80182 * 179.97438 * 8 7 6 10 10 C 1.81000 * 99.99929 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.46638 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47317 * 300.00032 * 11 10 9 13 13 C 1.52997 * 109.47269 * 60.00376 * 11 10 9 14 14 C 1.50706 * 109.46953 * 180.02562 * 11 10 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 N 1.36115 * 108.39494 * 0.24042 * 8 7 6 23 23 H 0.96998 * 126.49899 * 179.75671 * 22 8 7 24 24 H 1.09002 * 109.47339 * 299.99413 * 1 2 3 25 25 H 1.08997 * 109.47155 * 60.00087 * 1 2 3 26 26 H 1.09003 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47008 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47658 * 300.00166 * 3 2 1 29 29 H 1.09004 * 109.47429 * 60.00095 * 3 2 1 30 30 H 1.08996 * 109.47319 * 299.99421 * 4 2 1 31 31 H 1.08998 * 109.46964 * 60.00125 * 4 2 1 32 32 H 1.09003 * 109.46850 * 179.97438 * 4 2 1 33 33 H 1.08001 * 125.83181 * 0.05825 * 6 5 2 34 34 H 1.09000 * 109.47216 * 300.00172 * 10 9 8 35 35 H 1.09001 * 109.46620 * 60.00275 * 10 9 8 36 36 H 1.09002 * 109.47153 * 60.00359 * 12 11 10 37 37 H 1.09001 * 109.46832 * 180.02562 * 12 11 10 38 38 H 1.08992 * 109.47303 * 299.99871 * 12 11 10 39 39 H 1.09000 * 109.47140 * 59.99453 * 13 11 10 40 40 H 1.09001 * 109.47375 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47497 * 299.99829 * 13 11 10 42 42 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.2807 -1.2670 2.1954 7 7 2.1014 -1.7986 3.1169 8 6 3.3474 -1.5918 2.7593 9 16 4.7755 -2.1068 3.6538 10 6 3.9862 -2.9215 5.0642 11 6 5.0619 -3.4652 6.0065 12 6 5.9338 -4.4746 5.2570 13 6 5.9329 -2.3109 6.5063 14 6 4.4047 -4.1440 7.1806 15 1 3.3276 -4.1840 7.2477 16 6 5.1786 -4.7141 8.1692 17 7 6.4903 -4.6658 8.0873 18 14 4.3640 -5.5549 9.6248 19 1 2.8882 -5.4737 9.4810 20 1 4.7789 -6.9801 9.6689 21 1 4.7773 -4.8798 10.8812 22 7 3.3486 -0.9067 1.5832 23 1 4.1289 -0.6144 1.0865 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.2012 -1.2846 2.2249 34 1 3.3646 -2.2025 5.5979 35 1 3.3660 -3.7441 4.7081 36 1 6.4091 -3.9839 4.4076 37 1 6.6998 -4.8622 5.9285 38 1 5.3133 -5.2969 4.9010 39 1 5.3118 -1.5918 7.0403 40 1 6.6990 -2.6982 7.1780 41 1 6.4083 -1.8202 5.6570 42 1 7.0348 -5.0671 8.7825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601097595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = 11.459734 kcal Electronic energy + Delta-G solvation = -20002.067537 eV Core-core repulsion = 17107.650130 eV Total energy + Delta-G solvation = -2894.417407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.91537 -37.89684 -37.67555 -33.63835 -33.36099 -30.08434 -28.17207 -28.13277 -27.86230 -27.59602 -27.15566 -23.57063 -22.40768 -21.03147 -20.72744 -18.82901 -17.93784 -16.85863 -16.63040 -16.28871 -15.66490 -15.55162 -15.06874 -15.01447 -14.74044 -14.58848 -14.45579 -13.91948 -13.30149 -13.20003 -13.16173 -12.99329 -12.71636 -12.59449 -12.58307 -12.34311 -12.24958 -12.08436 -11.94649 -11.83913 -11.69831 -11.48019 -11.30959 -11.05513 -10.96813 -10.56849 -10.42438 -10.12079 -8.25871 -8.01746 -6.18462 0.37408 0.91215 1.34803 1.42379 1.46421 1.56397 2.02643 2.31791 2.47303 3.21389 3.63144 3.83541 4.03102 4.13365 4.30163 4.35556 4.36301 4.45305 4.70299 4.71622 4.73755 4.86148 4.95159 4.99467 5.00600 5.03631 5.09317 5.13134 5.15930 5.18232 5.24140 5.38401 5.44179 5.46902 5.64202 5.66572 5.68484 6.09682 6.18718 6.26032 6.41457 6.85066 6.93145 7.48989 8.97745 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.003513 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.045495 B = 7968.341443 C = 8354.110219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.012 3.988 6 C -0.045 4.045 7 N -0.523 5.523 8 C 0.173 3.827 9 S -0.025 6.025 10 C -0.049 4.049 11 C 0.071 3.929 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.524 4.524 15 H 0.046 0.954 16 C 0.027 3.973 17 N -0.902 5.902 18 Si 0.949 3.051 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.543 5.543 23 H 0.429 0.571 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.182 0.818 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 10.869 -18.817 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.194 4.194 7 N -0.246 5.246 8 C -0.198 4.198 9 S 0.206 5.794 10 C -0.198 4.198 11 C 0.069 3.931 12 C -0.181 4.181 13 C -0.181 4.181 14 C -0.564 4.564 15 H 0.065 0.935 16 C -0.173 4.173 17 N -0.540 5.540 18 Si 0.775 3.225 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.150 5.150 23 H 0.270 0.730 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.199 0.801 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.312 10.538 -18.236 21.987 hybrid contribution -1.053 -0.343 0.596 1.257 sum -7.364 10.195 -17.640 21.665 Atomic orbital electron populations 1.21863 0.91637 1.02752 1.03289 1.19202 0.97014 0.94320 0.88526 1.21911 1.00838 0.93965 1.03025 1.21909 1.00837 1.00380 0.96603 1.21785 0.82417 1.05873 1.00553 1.22463 1.00256 1.03877 0.92787 1.70776 0.99467 1.24441 1.29960 1.25402 0.98917 1.03745 0.91752 1.85195 1.01328 1.69849 1.23020 1.23560 1.01221 1.00574 0.94442 1.18071 0.90748 0.92848 0.91429 1.21742 1.00175 0.98380 0.97831 1.21743 1.00176 0.96680 0.99531 1.21313 0.92651 1.36229 1.06188 0.93540 1.25502 0.95376 0.96399 0.99988 1.69929 1.04330 1.45306 1.34484 0.85646 0.78742 0.78314 0.79765 1.19869 1.20612 1.20601 1.43165 1.08820 1.44316 1.18691 0.73012 0.92225 0.89675 0.92219 0.92999 0.89616 0.93044 0.93034 0.89625 0.93004 0.80080 0.91670 0.91670 0.94632 0.91695 0.95835 0.95838 0.91691 0.94631 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.39 71.98 0.53 -1.19 16 2 C 0.01 0.17 0.99 -52.93 -0.05 0.11 16 3 C -0.14 -1.80 8.46 71.98 0.61 -1.19 16 4 C -0.14 -1.80 8.46 71.98 0.61 -1.19 16 5 C 0.01 0.30 5.66 40.76 0.23 0.53 16 6 C -0.04 -1.33 10.82 83.42 0.90 -0.43 16 7 N -0.52 -19.74 10.60 -196.46 -2.08 -21.82 16 8 C 0.17 6.01 8.26 179.69 1.48 7.49 16 9 S -0.03 -0.93 19.36 -56.49 -1.09 -2.03 16 10 C -0.05 -2.19 4.14 71.98 0.30 -1.89 16 11 C 0.07 3.49 0.52 -52.93 -0.03 3.47 16 12 C -0.12 -5.93 8.01 71.98 0.58 -5.35 16 13 C -0.12 -5.93 8.01 71.98 0.58 -5.35 16 14 C -0.52 -28.69 8.01 25.60 0.21 -28.48 16 15 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 16 C 0.03 1.46 5.15 84.65 0.44 1.90 16 17 N -0.90 -49.63 9.35 21.45 0.20 -49.43 16 18 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 N -0.54 -14.14 6.24 -182.32 -1.14 -15.27 16 23 H 0.43 8.65 8.96 -92.71 -0.83 7.82 16 24 H 0.06 0.80 7.95 -2.39 -0.02 0.78 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.80 7.95 -2.39 -0.02 0.78 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.18 4.49 7.30 -2.91 -0.02 4.47 16 34 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.03 1.52 6.91 -2.39 -0.02 1.51 16 37 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 41 H 0.03 1.52 6.91 -2.39 -0.02 1.51 16 42 H 0.26 13.72 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -62.33 344.02 4.45 -57.87 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.16 Total: 16.73 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 6.38 Total: -31.57 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -3.02 Total: -86.53 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.09 Total: -2.03 kcal Total: -62.33 4.45 -57.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601097595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.333 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds