Wall clock time and date at job start Tue Mar 31 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46964 * 2 1 4 4 N 1.29025 * 124.91841 * 89.99832 * 3 2 1 5 5 C 1.31784 * 117.12545 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.74707 * 179.97438 * 5 4 3 7 7 N 1.46894 * 109.47536 * 275.02706 * 6 5 4 8 8 C 1.46906 * 110.99813 * 66.04752 * 7 6 5 9 9 C 1.46896 * 111.00535 * 190.00182 * 7 6 5 10 10 C 1.52998 * 109.47357 * 170.00225 * 9 7 6 11 11 H 1.08998 * 109.47104 * 55.00451 * 10 9 7 12 12 C 1.52998 * 109.47026 * 294.99646 * 10 9 7 13 13 C 1.53002 * 109.46886 * 174.99797 * 10 9 7 14 14 C 1.50706 * 109.47153 * 184.99546 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.33640 * 114.49966 * 0.23834 * 5 4 3 23 23 S 1.70977 * 124.91635 * 270.00078 * 3 2 1 24 24 H 1.09006 * 109.47304 * 59.99925 * 1 2 3 25 25 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46875 * 299.99862 * 1 2 3 27 27 H 1.08997 * 109.46875 * 240.00138 * 2 1 3 28 28 H 1.08997 * 109.47574 * 119.99950 * 2 1 3 29 29 H 1.08998 * 109.47282 * 155.02911 * 6 5 4 30 30 H 1.09005 * 109.47371 * 35.03114 * 6 5 4 31 31 H 1.08998 * 109.47350 * 183.95707 * 8 7 6 32 32 H 1.08997 * 109.46949 * 303.95349 * 8 7 6 33 33 H 1.09000 * 109.46831 * 63.95629 * 8 7 6 34 34 H 1.09001 * 109.47205 * 50.00089 * 9 7 6 35 35 H 1.09002 * 109.47023 * 290.00342 * 9 7 6 36 36 H 1.08990 * 109.47503 * 300.00380 * 12 10 9 37 37 H 1.09001 * 109.46970 * 60.00396 * 12 10 9 38 38 H 1.09003 * 109.46843 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.47178 * 65.00336 * 13 10 9 40 40 H 1.08993 * 109.47411 * 305.00018 * 13 10 9 41 41 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 42 42 H 1.08002 * 126.03513 * 179.76523 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7142 3.3480 0.8793 6 6 3.0401 4.2717 2.0245 7 7 1.8147 4.9452 2.4746 8 6 0.8700 3.9838 3.0590 9 6 2.1243 6.0225 3.4239 10 6 0.8666 6.8561 3.6772 11 1 0.0589 6.2037 4.0087 12 6 0.4540 7.5624 2.3843 13 6 1.1556 7.8995 4.7584 14 6 -0.1138 8.6385 5.0954 15 1 -1.0346 8.3887 4.5894 16 6 -0.0997 9.6336 6.0496 17 7 1.0205 9.9342 6.6697 18 14 -1.6734 10.5491 6.4679 19 1 -1.7997 11.7417 5.5921 20 1 -2.8385 9.6533 6.2555 21 1 -1.6328 10.9801 7.8883 22 6 2.8379 3.7117 -0.4007 23 16 2.3585 2.3435 -1.4020 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8899 29 1 3.7643 5.0169 1.6955 30 1 3.4612 3.6949 2.8481 31 1 -0.0558 4.4968 3.3196 32 1 0.6580 3.1970 2.3352 33 1 1.3069 3.5446 3.9558 34 1 2.9050 6.6597 3.0085 35 1 2.4694 5.5908 4.3635 36 1 1.2617 8.2148 2.0528 37 1 0.2481 6.8190 1.6141 38 1 -0.4423 8.1559 2.5646 39 1 1.9007 8.6057 4.3919 40 1 1.5345 7.4022 5.6512 41 1 1.8376 9.4586 6.4527 42 1 3.1738 4.6739 -0.7582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602455295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:13 Heat of formation + Delta-G solvation = 23.333997 kcal Electronic energy + Delta-G solvation = -19825.584518 eV Core-core repulsion = 16931.682017 eV Total energy + Delta-G solvation = -2893.902501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18795 -37.64142 -34.87455 -33.98913 -32.04302 -30.18111 -27.20400 -26.93492 -26.30240 -25.52597 -23.64930 -22.25304 -21.16450 -19.80895 -19.03177 -17.72854 -16.77196 -15.82774 -15.52322 -14.95741 -14.81102 -14.61419 -14.16594 -13.78685 -13.67336 -13.32233 -13.13876 -12.83064 -12.50338 -12.20095 -11.95677 -11.70961 -11.69358 -11.46097 -11.38570 -11.27497 -11.18988 -10.93408 -10.63872 -10.22903 -10.07462 -9.76189 -9.67495 -9.50949 -9.41119 -8.89208 -8.43801 -8.26190 -8.05173 -6.29345 -3.97069 0.58717 1.21640 1.58688 2.62072 3.46804 3.50576 3.66137 3.81722 4.32008 4.59842 4.62884 4.81653 4.88706 4.97821 5.15270 5.28385 5.44721 5.45211 5.47873 5.49227 5.58014 5.70405 5.71953 5.84213 5.89421 5.95836 6.04502 6.08382 6.27110 6.33569 6.47164 6.64045 6.92267 7.06877 7.14589 7.28740 7.35375 7.47327 7.63901 7.65248 8.30983 8.54366 8.96289 9.74302 11.11217 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.003025 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.178015 B = 9252.487913 C = 9491.536061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.049 3.951 4 N -0.464 5.464 5 C 0.082 3.918 6 C 0.126 3.874 7 N -0.533 5.533 8 C 0.026 3.974 9 C 0.060 3.940 10 C -0.074 4.074 11 H 0.058 0.942 12 C -0.121 4.121 13 C 0.014 3.986 14 C -0.592 4.592 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 1.070 2.930 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.285 1.285 22 C -0.238 4.238 23 S 0.102 5.898 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.006 0.994 40 H 0.003 0.997 41 H 0.268 0.732 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -19.366 -16.780 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.230 4.230 4 N -0.179 5.179 5 C -0.050 4.050 6 C -0.005 4.005 7 N -0.256 5.256 8 C -0.122 4.122 9 C -0.067 4.067 10 C -0.093 4.093 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.023 4.023 14 C -0.630 4.630 15 H 0.068 0.932 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.898 3.102 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.377 4.377 23 S 0.356 5.644 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.021 0.979 41 H 0.078 0.922 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.370 -18.385 -16.785 25.007 hybrid contribution 1.284 -0.892 0.399 1.613 sum 3.653 -19.277 -16.386 25.563 Atomic orbital electron populations 1.21771 0.93430 1.02490 1.02884 1.20202 0.96802 0.87605 1.04045 1.27024 1.03312 1.01713 0.90912 1.66102 1.14262 1.05999 1.31530 1.20129 0.99873 0.90706 0.94252 1.20594 0.92805 0.93988 0.93066 1.62038 1.11561 1.11477 1.40571 1.22411 0.96752 0.95249 0.97771 1.22360 0.99583 0.92098 0.92644 1.21082 0.94720 0.96543 0.96910 0.92364 1.21561 1.00950 0.98993 0.96327 1.19257 0.97433 0.93160 0.92487 1.22058 0.95275 1.21201 1.24510 0.93201 1.25816 1.03307 0.96304 0.93682 1.70748 1.00316 1.42476 1.41870 0.83536 0.74351 0.75780 0.76497 1.21531 1.21531 1.21106 1.26795 1.11589 1.03756 0.95580 1.83875 1.61174 1.06118 1.13201 0.92363 0.91443 0.91802 0.89826 0.88900 0.89348 0.93331 0.91082 0.91415 0.95906 0.91337 0.95252 0.94322 0.93864 0.92697 0.97532 0.97893 0.92167 0.80537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.05 -0.34 6.52 -27.88 -0.18 -0.52 16 3 C 0.05 0.52 6.64 -13.46 -0.09 0.43 16 4 N -0.46 -6.08 9.21 -8.06 -0.07 -6.16 16 5 C 0.08 1.07 5.58 -84.22 -0.47 0.60 16 6 C 0.13 1.72 5.40 -4.98 -0.03 1.69 16 7 N -0.53 -8.45 4.21 -244.37 -1.03 -9.48 16 8 C 0.03 0.42 9.12 60.07 0.55 0.96 16 9 C 0.06 1.07 4.35 -3.83 -0.02 1.06 16 10 C -0.07 -1.56 2.26 -90.62 -0.20 -1.76 16 11 H 0.06 1.28 6.34 -51.93 -0.33 0.95 16 12 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 13 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 14 C -0.59 -17.03 8.41 -34.44 -0.29 -17.32 16 15 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 16 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 17 N -0.92 -28.61 13.65 55.43 0.76 -27.85 16 18 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.24 -2.68 11.12 29.12 0.32 -2.36 16 23 S 0.10 0.96 23.18 -107.50 -2.49 -1.53 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 30 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.07 1.18 6.37 -51.93 -0.33 0.85 16 32 H 0.07 1.04 6.21 -51.93 -0.32 0.72 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 38 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 39 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 40 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 41 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 42 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -31.89 349.89 -9.64 -41.53 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.09 Total: -3.10 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 0.09 Total: -19.48 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.35 Total: -43.48 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.89 -9.64 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602455295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.867 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds