Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47702 * 2 1 4 4 N 1.29027 * 124.91831 * 90.00088 * 3 2 1 5 5 C 1.31773 * 117.12611 * 180.02562 * 4 3 2 6 6 C 1.50706 * 122.75193 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46929 * 275.02934 * 6 5 4 8 8 C 1.46905 * 110.99949 * 293.94868 * 7 6 5 9 9 C 1.46905 * 111.00156 * 169.99994 * 7 6 5 10 10 C 1.52999 * 109.47028 * 189.99844 * 9 7 6 11 11 H 1.08996 * 109.46929 * 304.98924 * 10 9 7 12 12 C 1.52997 * 109.47317 * 64.99820 * 10 9 7 13 13 C 1.53006 * 109.46623 * 184.99640 * 10 9 7 14 14 C 1.50703 * 109.46967 * 174.99771 * 13 10 9 15 15 H 1.07996 * 119.99755 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00135 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47293 * 60.00361 * 18 16 14 20 20 H 1.48506 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47416 * 300.00209 * 18 16 14 22 22 C 1.33639 * 114.50116 * 0.23062 * 5 4 3 23 23 S 1.70976 * 124.91423 * 270.00208 * 3 2 1 24 24 H 1.09008 * 109.46754 * 300.00581 * 1 2 3 25 25 H 1.09003 * 109.46706 * 59.99279 * 1 2 3 26 26 H 1.08997 * 109.47667 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46754 * 239.99419 * 2 1 3 28 28 H 1.09003 * 109.46706 * 120.00721 * 2 1 3 29 29 H 1.08989 * 109.47158 * 155.02516 * 6 5 4 30 30 H 1.08999 * 109.46802 * 35.02195 * 6 5 4 31 31 H 1.09001 * 109.47075 * 296.04963 * 8 7 6 32 32 H 1.08999 * 109.47212 * 56.04618 * 8 7 6 33 33 H 1.09000 * 109.47490 * 176.05014 * 8 7 6 34 34 H 1.08994 * 109.47305 * 69.99369 * 9 7 6 35 35 H 1.08998 * 109.46287 * 309.99818 * 9 7 6 36 36 H 1.09002 * 109.47153 * 299.99641 * 12 10 9 37 37 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47261 * 59.99813 * 12 10 9 39 39 H 1.09001 * 109.47326 * 294.99995 * 13 10 9 40 40 H 1.09000 * 109.46904 * 55.00348 * 13 10 9 41 41 H 0.97000 * 120.00259 * 179.97438 * 17 16 14 42 42 H 1.08004 * 126.03893 * 179.76373 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2787 2.1170 1.0580 5 6 2.7135 3.3480 0.8793 6 6 3.0396 4.2718 2.0245 7 7 1.8139 4.9444 2.4753 8 6 1.2951 5.8448 1.4369 9 6 2.0425 5.6680 3.7331 10 6 0.7027 6.1428 4.2991 11 1 0.1794 6.7333 3.5471 12 6 -0.1491 4.9300 4.6790 13 6 0.9495 7.0018 5.5411 14 6 -0.3590 7.5701 6.0269 15 1 -1.2750 7.3411 5.5026 16 6 -0.3869 8.3814 7.1413 17 7 0.7285 8.6599 7.7800 18 14 -2.0089 9.0852 7.7438 19 1 -2.9339 7.9748 8.0854 20 1 -1.7695 9.9190 8.9491 21 1 -2.6128 9.9218 6.6758 22 6 2.8366 3.7121 -0.4006 23 16 2.3587 2.3433 -1.4020 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 3.7631 5.0174 1.6952 30 1 3.4612 3.6951 2.8478 31 1 2.0151 6.6428 1.2552 32 1 1.1348 5.2836 0.5163 33 1 0.3507 6.2762 1.7686 34 1 2.6834 6.5294 3.5455 35 1 2.5258 5.0051 4.4508 36 1 -0.3249 4.3180 3.7942 37 1 -1.1034 5.2684 5.0826 38 1 0.3743 4.3396 5.4311 39 1 1.3926 6.3880 6.3253 40 1 1.6286 7.8167 5.2901 41 1 0.7090 9.2310 8.5638 42 1 3.1717 4.6745 -0.7581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602455296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = 26.895751 kcal Electronic energy + Delta-G solvation = -19790.126141 eV Core-core repulsion = 16896.378090 eV Total energy + Delta-G solvation = -2893.748051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13133 -37.61280 -34.77151 -33.82011 -31.98296 -29.99775 -27.68141 -27.02246 -26.21679 -25.44749 -23.70116 -22.17286 -21.10348 -19.81774 -18.79330 -17.65038 -16.39055 -15.77752 -15.51000 -14.89542 -14.69456 -14.66118 -14.42162 -13.98050 -13.58489 -13.32094 -12.89728 -12.53396 -12.38617 -12.35259 -12.05031 -11.88293 -11.49761 -11.38444 -11.35057 -11.20542 -11.09389 -10.80772 -10.69679 -10.25118 -10.22754 -9.67895 -9.55956 -9.48596 -9.12474 -8.95439 -8.81982 -8.29140 -7.99256 -5.94325 -3.95208 0.59085 1.23767 1.60339 2.68840 3.36759 3.40849 3.43648 3.88029 4.33245 4.51986 4.64971 4.85296 4.95849 5.02298 5.18400 5.30583 5.40403 5.41742 5.53687 5.55317 5.58230 5.68272 5.76572 5.86368 5.93119 6.01628 6.07854 6.13695 6.25062 6.45787 6.59446 6.76679 7.06580 7.18864 7.25406 7.37517 7.45982 7.73152 7.73672 7.90037 8.06242 8.50625 9.10960 9.67875 11.17269 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.003094 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.379726 B = 9046.892015 C = 9459.854924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.054 3.946 4 N -0.451 5.451 5 C 0.092 3.908 6 C 0.125 3.875 7 N -0.530 5.530 8 C 0.021 3.979 9 C 0.062 3.938 10 C -0.080 4.080 11 H 0.056 0.944 12 C -0.122 4.122 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.258 4.258 23 S 0.097 5.903 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 -14.967 -19.761 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.225 4.225 4 N -0.165 5.165 5 C -0.040 4.040 6 C -0.006 4.006 7 N -0.254 5.254 8 C -0.127 4.127 9 C -0.065 4.065 10 C -0.099 4.099 11 H 0.074 0.926 12 C -0.179 4.179 13 C -0.010 4.010 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.398 4.398 23 S 0.351 5.649 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.169 -15.652 -20.077 25.796 hybrid contribution 0.001 1.811 0.906 2.025 sum 4.170 -13.841 -19.171 24.010 Atomic orbital electron populations 1.21771 0.93381 1.02482 1.02957 1.20213 0.96865 0.87567 1.04055 1.27106 1.03024 1.01750 0.90655 1.66059 1.13469 1.05864 1.31111 1.20172 0.99039 0.91083 0.93737 1.20600 0.91718 0.94097 0.94156 1.61949 1.27818 1.31352 1.04238 1.22461 1.00681 0.94730 0.94858 1.22358 0.99132 0.95699 0.89275 1.21222 0.92931 0.96766 0.98979 0.92602 1.21569 0.99910 0.96969 0.99449 1.19122 0.96891 0.93821 0.91141 1.21203 0.93780 1.28857 1.11191 0.92650 1.25013 0.96116 0.96603 0.96796 1.69954 1.26235 1.37719 1.19843 0.86695 0.84293 0.79100 0.78133 1.20253 1.21392 1.20345 1.26826 1.13160 1.03963 0.95848 1.83846 1.61348 1.06186 1.13473 0.91566 0.92490 0.91461 0.89898 0.88748 0.93409 0.89115 0.95926 0.92289 0.90528 0.95194 0.91140 0.93943 0.92897 0.94192 0.96562 0.96986 0.93071 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.05 -0.37 6.52 -27.89 -0.18 -0.55 16 3 C 0.05 0.59 6.64 -13.46 -0.09 0.50 16 4 N -0.45 -6.27 10.53 -8.06 -0.08 -6.35 16 5 C 0.09 1.21 5.59 -84.23 -0.47 0.74 16 6 C 0.12 1.71 5.41 -4.97 -0.03 1.68 16 7 N -0.53 -8.37 4.21 -244.37 -1.03 -9.39 16 8 C 0.02 0.30 9.08 60.07 0.55 0.85 16 9 C 0.06 1.11 4.35 -3.82 -0.02 1.10 16 10 C -0.08 -1.69 2.26 -90.62 -0.20 -1.89 16 11 H 0.06 1.19 6.34 -51.93 -0.33 0.86 16 12 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 13 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 15 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.26 -2.83 9.76 29.12 0.28 -2.54 16 23 S 0.10 0.92 23.18 -107.50 -2.49 -1.58 16 24 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.58 8.08 -51.94 -0.42 0.16 16 30 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.78 6.23 -51.93 -0.32 0.46 16 33 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 37 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -31.43 351.15 -9.72 -41.14 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -7.14 Total: -3.73 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 0.03 Total: -15.78 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.38 Total: -42.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.43 -9.72 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602455296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.039 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds