Wall clock time and date at job start Tue Mar 31 2020 07:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47034 * 2 1 4 4 C 1.53000 * 109.47344 * 64.99682 * 3 2 1 5 5 C 1.53002 * 109.47039 * 185.60026 * 4 3 2 6 6 C 1.53005 * 109.46906 * 184.99456 * 3 2 1 7 7 N 1.46901 * 109.46700 * 65.12118 * 6 3 2 8 8 C 1.46908 * 110.99790 * 194.75061 * 7 6 3 9 9 C 1.50704 * 109.46876 * 167.21579 * 8 7 6 10 10 H 1.08000 * 120.00379 * 4.29874 * 9 8 7 11 11 C 1.37875 * 119.99617 * 184.29788 * 9 8 7 12 12 N 1.31515 * 120.00223 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00106 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47358 * 89.99369 * 13 11 9 15 15 H 1.48497 * 109.47152 * 209.99930 * 13 11 9 16 16 H 1.48500 * 109.46620 * 329.99676 * 13 11 9 17 17 C 1.46896 * 111.00388 * 70.79801 * 7 6 3 18 18 C 1.50699 * 109.47200 * 64.59763 * 17 7 6 19 19 C 1.35132 * 127.24973 * 90.39962 * 18 17 7 20 20 C 1.37817 * 114.76238 * 179.87041 * 19 18 17 21 21 N 1.30081 * 116.87643 * 0.44396 * 20 19 18 22 22 S 1.69602 * 107.15329 * 359.76031 * 21 20 19 23 23 H 1.09008 * 109.46781 * 60.00307 * 1 2 3 24 24 H 1.08997 * 109.47634 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47510 * 300.00536 * 1 2 3 26 26 H 1.09000 * 109.46991 * 239.99405 * 2 1 3 27 27 H 1.09005 * 109.46305 * 119.99832 * 2 1 3 28 28 H 1.09000 * 109.47100 * 304.99045 * 3 2 1 29 29 H 1.08989 * 109.47000 * 305.60373 * 4 3 2 30 30 H 1.09000 * 109.46832 * 65.60679 * 4 3 2 31 31 H 1.08994 * 109.47435 * 302.63775 * 5 4 3 32 32 H 1.09007 * 109.46685 * 62.63604 * 5 4 3 33 33 H 1.09002 * 109.47084 * 182.62989 * 5 4 3 34 34 H 1.08997 * 109.47343 * 305.12226 * 6 3 2 35 35 H 1.08998 * 109.47142 * 185.11757 * 6 3 2 36 36 H 1.08994 * 109.46976 * 287.21287 * 8 7 6 37 37 H 1.08997 * 109.47113 * 47.21628 * 8 7 6 38 38 H 0.96998 * 119.99914 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.47511 * 184.59849 * 17 7 6 40 40 H 1.09006 * 109.47112 * 304.60053 * 17 7 6 41 41 H 1.08004 * 122.62148 * 0.04251 * 19 18 17 42 42 H 1.07995 * 121.56028 * 180.20995 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0218 3.6058 1.2498 6 6 3.5648 1.4443 -0.1256 7 7 3.9489 0.8989 -1.4344 8 6 5.3776 0.5582 -1.4640 9 6 5.6699 -0.2760 -2.6846 10 1 4.8896 -0.4698 -3.4058 11 6 6.9334 -0.7918 -2.8806 12 7 7.8837 -0.5555 -2.0027 13 14 7.2960 -1.8253 -4.3939 14 1 7.7547 -0.9436 -5.4973 15 1 8.3578 -2.8134 -4.0757 16 1 6.0634 -2.5405 -4.8117 17 6 3.6082 1.8338 -2.5150 18 6 4.4218 3.0934 -2.3646 19 6 5.6340 3.3532 -2.9023 20 6 6.1456 4.5964 -2.5987 21 7 5.4204 5.3604 -1.8356 22 16 4.0061 4.5005 -1.4659 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 1.6055 1.9814 -0.8419 29 1 0.5577 2.0377 1.4453 30 1 2.1490 1.6489 2.1415 31 1 3.0923 3.6947 1.0650 32 1 1.4724 4.0939 0.4447 33 1 1.7760 4.0828 2.1986 34 1 3.9953 0.8293 0.6648 35 1 3.9357 2.4651 -0.0344 36 1 5.9687 1.4733 -1.4994 37 1 5.6352 -0.0063 -0.5679 38 1 8.7727 -0.9181 -2.1409 39 1 3.8278 1.3722 -3.4776 40 1 2.5472 2.0783 -2.4629 41 1 6.1595 2.6433 -3.5238 42 1 7.1055 4.9195 -2.9737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602464239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:17 Heat of formation + Delta-G solvation = 22.389619 kcal Electronic energy + Delta-G solvation = -21057.732202 eV Core-core repulsion = 18163.788750 eV Total energy + Delta-G solvation = -2893.943452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.85346 -37.76090 -35.41200 -32.60610 -31.52824 -30.87421 -28.28746 -27.23233 -25.50283 -23.69159 -23.14909 -22.29152 -20.66406 -19.60263 -18.95900 -17.16824 -16.34421 -15.42322 -15.17360 -15.08155 -14.47699 -14.30230 -13.92265 -13.67408 -13.29549 -13.09467 -12.82938 -12.55186 -12.38027 -12.15667 -11.77563 -11.68229 -11.55960 -11.19918 -11.02091 -10.95742 -10.73492 -10.71316 -10.48379 -10.21317 -10.14554 -10.03105 -9.99682 -9.79831 -9.26630 -8.92330 -8.50075 -8.20975 -7.40147 -6.06666 -4.08283 1.14271 1.94977 2.28565 2.97697 3.27293 3.35215 3.38518 4.37349 4.81065 5.02710 5.07384 5.15240 5.27945 5.35854 5.46433 5.53453 5.58981 5.67176 5.73228 5.78340 5.86804 5.97234 6.00255 6.08111 6.13439 6.21774 6.26802 6.32003 6.37123 6.38232 6.47995 6.55636 6.58094 6.75116 6.84160 7.03595 7.19085 7.31553 7.73399 7.99312 8.10298 8.45841 8.98554 9.55724 11.03656 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.007148 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.420891 B = 3916.491964 C = 5508.493006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.157 4.157 6 C 0.043 3.957 7 N -0.512 5.512 8 C 0.184 3.816 9 C -0.505 4.505 10 H 0.062 0.938 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.893 3.107 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.131 3.869 18 C -0.173 4.173 19 C -0.187 4.187 20 C 0.092 3.908 21 N -0.479 5.479 22 S 0.215 5.785 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.003 0.997 37 H 0.030 0.970 38 H 0.261 0.739 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.164 0.836 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 6.630 2.370 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.100 4.100 4 C -0.158 4.158 5 C -0.215 4.215 6 C -0.086 4.086 7 N -0.234 5.234 8 C 0.059 3.941 9 C -0.543 4.543 10 H 0.080 0.920 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.198 1.198 17 C 0.000 4.000 18 C -0.305 4.305 19 C -0.222 4.222 20 C -0.106 4.106 21 N -0.300 5.300 22 S 0.366 5.634 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.182 0.818 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.734 7.667 3.601 14.472 hybrid contribution 2.054 -1.074 -1.697 2.873 sum -9.680 6.593 1.903 11.865 Atomic orbital electron populations 1.21842 0.97086 1.00858 1.01078 1.21470 0.94188 0.96368 1.03067 1.21192 0.95532 0.96280 0.96968 1.21610 1.00769 0.95518 0.97886 1.21909 1.02299 0.96283 1.00966 1.22405 0.94746 0.98447 0.92977 1.62595 1.23403 1.36532 1.00853 1.19899 0.80317 0.95654 0.98184 1.21095 0.95384 1.31370 1.06492 0.91971 1.24946 0.96300 0.96506 0.96600 1.69956 1.02655 1.45649 1.35254 0.86579 0.78059 0.80247 0.83027 1.20781 1.21354 1.19808 1.20900 0.95715 0.84529 0.98814 1.26565 1.00846 1.02058 1.01049 1.21529 0.96447 0.97980 1.06243 1.22871 1.00702 0.91682 0.95351 1.76710 1.05265 1.27331 1.20675 1.83839 1.25134 1.04713 1.49713 0.93198 0.93376 0.93237 0.90028 0.92740 0.91656 0.92002 0.92284 0.92033 0.92872 0.93315 0.91352 0.94577 0.97914 0.95164 0.92952 0.88070 0.90913 0.81820 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 37.16 0.36 -1.36 16 2 C -0.11 -1.56 5.35 -26.73 -0.14 -1.70 16 3 C -0.08 -1.11 1.85 -90.62 -0.17 -1.28 16 4 C -0.12 -1.44 5.27 -26.73 -0.14 -1.58 16 5 C -0.16 -1.86 9.69 37.16 0.36 -1.50 16 6 C 0.04 0.73 4.11 -3.82 -0.02 0.71 16 7 N -0.51 -9.93 4.02 -237.51 -0.96 -10.89 16 8 C 0.18 4.43 4.49 -4.97 -0.02 4.41 16 9 C -0.50 -13.08 8.63 -34.44 -0.30 -13.37 16 10 H 0.06 1.59 7.14 -52.49 -0.37 1.22 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 13 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.13 2.28 5.62 -4.98 -0.03 2.25 16 18 C -0.17 -3.00 4.39 -35.41 -0.16 -3.16 16 19 C -0.19 -3.35 8.56 -40.84 -0.35 -3.70 16 20 C 0.09 1.51 11.27 -18.45 -0.21 1.30 16 21 N -0.48 -8.33 12.09 28.86 0.35 -7.98 16 22 S 0.22 3.44 21.15 -107.50 -2.27 1.16 16 23 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.51 6.45 -51.93 -0.33 0.18 16 26 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.90 6.45 -51.93 -0.34 0.57 16 29 H 0.06 0.67 6.32 -51.94 -0.33 0.34 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.82 5.53 -51.93 -0.29 0.53 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.24 7.79 -51.93 -0.40 0.84 16 35 H 0.04 0.62 3.62 -51.93 -0.19 0.43 16 36 H 0.00 0.08 5.64 -51.93 -0.29 -0.21 16 37 H 0.03 0.82 7.81 -51.93 -0.41 0.41 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.10 1.86 6.98 -51.93 -0.36 1.50 16 40 H 0.07 1.10 6.40 -51.93 -0.33 0.77 16 41 H 0.16 3.12 8.06 -52.48 -0.42 2.69 16 42 H 0.18 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -27.85 336.82 -9.55 -37.41 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.56 Total: 1.77 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.91 Total: -17.51 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.13 Total: -43.58 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.27 Total: 1.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.85 -9.55 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.797 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds