Wall clock time and date at job start Tue Mar 31 2020 07:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47034 * 2 1 4 4 C 1.53000 * 109.47344 * 64.99682 * 3 2 1 5 5 C 1.53002 * 109.47039 * 185.60026 * 4 3 2 6 6 C 1.53005 * 109.46906 * 184.99456 * 3 2 1 7 7 N 1.46901 * 109.46700 * 65.12118 * 6 3 2 8 8 C 1.46908 * 110.99790 * 194.75061 * 7 6 3 9 9 C 1.50704 * 109.46876 * 167.21579 * 8 7 6 10 10 H 1.08000 * 120.00379 * 4.29874 * 9 8 7 11 11 C 1.37875 * 119.99617 * 184.29788 * 9 8 7 12 12 N 1.31515 * 120.00223 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00106 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47358 * 89.99369 * 13 11 9 15 15 H 1.48497 * 109.47152 * 209.99930 * 13 11 9 16 16 H 1.48500 * 109.46620 * 329.99676 * 13 11 9 17 17 C 1.46896 * 111.00388 * 70.79801 * 7 6 3 18 18 C 1.50699 * 109.47200 * 64.59763 * 17 7 6 19 19 C 1.35132 * 127.24973 * 90.39962 * 18 17 7 20 20 C 1.37817 * 114.76238 * 179.87041 * 19 18 17 21 21 N 1.30081 * 116.87643 * 0.44396 * 20 19 18 22 22 S 1.69602 * 107.15329 * 359.76031 * 21 20 19 23 23 H 1.09008 * 109.46781 * 60.00307 * 1 2 3 24 24 H 1.08997 * 109.47634 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47510 * 300.00536 * 1 2 3 26 26 H 1.09000 * 109.46991 * 239.99405 * 2 1 3 27 27 H 1.09005 * 109.46305 * 119.99832 * 2 1 3 28 28 H 1.09000 * 109.47100 * 304.99045 * 3 2 1 29 29 H 1.08989 * 109.47000 * 305.60373 * 4 3 2 30 30 H 1.09000 * 109.46832 * 65.60679 * 4 3 2 31 31 H 1.08994 * 109.47435 * 302.63775 * 5 4 3 32 32 H 1.09007 * 109.46685 * 62.63604 * 5 4 3 33 33 H 1.09002 * 109.47084 * 182.62989 * 5 4 3 34 34 H 1.08997 * 109.47343 * 305.12226 * 6 3 2 35 35 H 1.08998 * 109.47142 * 185.11757 * 6 3 2 36 36 H 1.08994 * 109.46976 * 287.21287 * 8 7 6 37 37 H 1.08997 * 109.47113 * 47.21628 * 8 7 6 38 38 H 0.96998 * 119.99914 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.47511 * 184.59849 * 17 7 6 40 40 H 1.09006 * 109.47112 * 304.60053 * 17 7 6 41 41 H 1.08004 * 122.62148 * 0.04251 * 19 18 17 42 42 H 1.07995 * 121.56028 * 180.20995 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0218 3.6058 1.2498 6 6 3.5648 1.4443 -0.1256 7 7 3.9489 0.8989 -1.4344 8 6 5.3776 0.5582 -1.4640 9 6 5.6699 -0.2760 -2.6846 10 1 4.8896 -0.4698 -3.4058 11 6 6.9334 -0.7918 -2.8806 12 7 7.8837 -0.5555 -2.0027 13 14 7.2960 -1.8253 -4.3939 14 1 7.7547 -0.9436 -5.4973 15 1 8.3578 -2.8134 -4.0757 16 1 6.0634 -2.5405 -4.8117 17 6 3.6082 1.8338 -2.5150 18 6 4.4218 3.0934 -2.3646 19 6 5.6340 3.3532 -2.9023 20 6 6.1456 4.5964 -2.5987 21 7 5.4204 5.3604 -1.8356 22 16 4.0061 4.5005 -1.4659 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 1.6055 1.9814 -0.8419 29 1 0.5577 2.0377 1.4453 30 1 2.1490 1.6489 2.1415 31 1 3.0923 3.6947 1.0650 32 1 1.4724 4.0939 0.4447 33 1 1.7760 4.0828 2.1986 34 1 3.9953 0.8293 0.6648 35 1 3.9357 2.4651 -0.0344 36 1 5.9687 1.4733 -1.4994 37 1 5.6352 -0.0063 -0.5679 38 1 8.7727 -0.9181 -2.1409 39 1 3.8278 1.3722 -3.4776 40 1 2.5472 2.0783 -2.4629 41 1 6.1595 2.6433 -3.5238 42 1 7.1055 4.9195 -2.9737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602464239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:17 Heat of formation + Delta-G solvation = 7.480239 kcal Electronic energy + Delta-G solvation = -21058.378721 eV Core-core repulsion = 18163.788750 eV Total energy + Delta-G solvation = -2894.589971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26736 -39.06300 -36.77814 -34.59596 -32.51115 -32.30153 -29.90169 -28.69627 -27.00619 -25.02724 -24.71094 -23.32815 -22.27340 -20.87152 -20.26619 -18.64118 -18.22471 -16.85121 -16.75839 -16.58979 -16.05340 -15.42374 -15.16430 -14.88303 -14.56708 -14.48484 -14.20850 -14.00302 -13.87883 -13.52681 -13.24422 -12.96599 -12.82142 -12.63660 -12.56137 -12.50373 -12.18916 -12.01473 -11.87847 -11.80545 -11.50905 -11.37712 -11.20746 -11.16492 -10.87508 -10.56630 -10.36129 -9.54223 -9.02643 -8.13980 -6.22134 -0.23310 0.59488 0.95542 1.43057 1.45022 1.55049 1.60419 2.43342 3.18242 3.32639 3.72856 3.89861 4.06248 4.16393 4.26789 4.37167 4.44029 4.47196 4.57993 4.63019 4.71989 4.81507 4.88509 4.93058 4.97075 5.03289 5.04421 5.10410 5.20204 5.23280 5.31759 5.33365 5.36952 5.44803 5.55050 5.62232 5.68887 5.72517 5.73950 6.10675 6.33107 6.62258 6.92764 7.46533 8.96506 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.007148 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.420891 B = 3916.491964 C = 5508.493006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.072 4.072 4 C -0.115 4.115 5 C -0.157 4.157 6 C 0.045 3.955 7 N -0.515 5.515 8 C 0.203 3.797 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.290 1.290 16 H -0.266 1.266 17 C 0.134 3.866 18 C -0.185 4.185 19 C -0.202 4.202 20 C 0.093 3.907 21 N -0.499 5.499 22 S 0.259 5.741 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.036 0.964 36 H -0.015 1.015 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.147 0.853 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 7.354 2.062 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.214 4.214 6 C -0.083 4.083 7 N -0.236 5.236 8 C 0.077 3.923 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.190 4.190 12 N -0.574 5.574 13 Si 0.784 3.216 14 H -0.198 1.198 15 H -0.216 1.216 16 H -0.191 1.191 17 C 0.004 3.996 18 C -0.317 4.317 19 C -0.237 4.237 20 C -0.104 4.104 21 N -0.319 5.319 22 S 0.410 5.590 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.003 0.997 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.164 0.836 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.647 8.401 3.290 16.360 hybrid contribution 2.606 -1.269 -1.546 3.285 sum -11.041 7.132 1.744 13.260 Atomic orbital electron populations 1.21783 0.94725 1.01598 1.02090 1.21417 0.96211 0.95855 1.01485 1.21141 0.92646 0.96769 0.98499 1.21587 1.02005 0.95361 0.96352 1.21903 1.01092 0.96261 1.02171 1.22454 0.97232 0.97651 0.91004 1.62484 1.20198 1.38242 1.02722 1.19484 0.82960 0.94076 0.95792 1.21375 0.95417 1.31054 1.06872 0.91788 1.25739 0.96204 0.97714 0.99347 1.70088 1.03029 1.47018 1.37224 0.85553 0.77823 0.78597 0.79673 1.19829 1.21568 1.19085 1.20887 0.97244 0.84127 0.97383 1.26598 1.00876 1.02817 1.01455 1.21544 0.96848 0.98518 1.06823 1.23116 1.01555 0.90906 0.94830 1.76654 1.06092 1.28050 1.21144 1.83599 1.24097 1.02927 1.48393 0.92605 0.92892 0.91710 0.92616 0.93430 0.90993 0.89844 0.92636 0.93924 0.92111 0.91757 0.93351 0.94612 0.99700 0.99010 0.93040 0.89311 0.88092 0.83572 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.67 71.98 0.70 -2.23 16 2 C -0.11 -2.96 5.35 30.59 0.16 -2.80 16 3 C -0.07 -1.87 1.85 -10.79 -0.02 -1.89 16 4 C -0.12 -2.48 5.27 30.59 0.16 -2.32 16 5 C -0.16 -3.32 9.69 71.98 0.70 -2.62 16 6 C 0.05 1.54 4.11 86.30 0.35 1.89 16 7 N -0.51 -20.31 4.02 -905.36 -3.64 -23.96 16 8 C 0.20 10.14 4.49 85.56 0.38 10.53 16 9 C -0.51 -26.93 8.63 25.60 0.22 -26.71 16 10 H 0.06 3.30 7.14 -2.91 -0.02 3.28 16 11 C 0.01 0.43 5.46 84.65 0.46 0.90 16 12 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 13 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 17 C 0.13 4.61 5.62 85.56 0.48 5.09 16 18 C -0.19 -6.37 4.39 24.97 0.11 -6.26 16 19 C -0.20 -7.28 8.56 21.45 0.18 -7.09 16 20 C 0.09 3.01 11.27 84.85 0.96 3.96 16 21 N -0.50 -16.72 12.09 -62.59 -0.76 -17.48 16 22 S 0.26 7.89 21.15 -56.49 -1.19 6.70 16 23 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.12 6.45 -2.39 -0.02 1.10 16 26 H 0.06 1.76 7.62 -2.39 -0.02 1.74 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.07 1.80 6.45 -2.39 -0.02 1.79 16 29 H 0.08 1.49 6.32 -2.39 -0.02 1.47 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.06 5.53 -2.39 -0.01 1.05 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.82 7.79 -2.39 -0.02 1.80 16 35 H 0.04 1.23 3.62 -2.39 -0.01 1.22 16 36 H -0.01 -0.78 5.64 -2.39 -0.01 -0.79 16 37 H -0.01 -0.47 7.81 -2.39 -0.02 -0.49 16 38 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.09 3.28 6.98 -2.39 -0.02 3.26 16 40 H 0.10 2.89 6.40 -2.38 -0.02 2.87 16 41 H 0.15 5.77 8.06 -2.91 -0.02 5.74 16 42 H 0.20 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -60.41 336.82 2.57 -57.85 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.00 Total: 15.72 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.85 Total: -29.55 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -4.11 Total: -95.55 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 7.89 SS G_CDS: -1.19 Total: 6.70 kcal Total: -60.41 2.57 -57.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.326 kcal (2) G-P(sol) polarization free energy of solvation -60.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds