Wall clock time and date at job start Tue Mar 31 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00361 * 2 1 4 4 C 1.53009 * 109.47121 * 184.91021 * 3 2 1 5 5 N 1.46900 * 109.47167 * 67.81086 * 4 3 2 6 6 C 1.46900 * 110.99923 * 287.19698 * 5 4 3 7 7 C 1.50699 * 109.46948 * 171.73547 * 6 5 4 8 8 H 1.08004 * 120.00136 * 4.74446 * 7 6 5 9 9 C 1.37878 * 119.99996 * 184.74587 * 7 6 5 10 10 N 1.31511 * 119.99921 * 5.05038 * 9 7 6 11 11 Si 1.86803 * 120.00196 * 185.04391 * 9 7 6 12 12 H 1.48506 * 109.46756 * 94.99678 * 11 9 7 13 13 H 1.48500 * 109.47251 * 214.99904 * 11 9 7 14 14 H 1.48503 * 109.47179 * 335.00173 * 11 9 7 15 15 C 1.46900 * 110.99848 * 163.23829 * 5 4 3 16 16 C 1.50697 * 109.47312 * 295.56667 * 15 5 4 17 17 C 1.38193 * 120.02864 * 268.16591 * 16 15 5 18 18 C 1.38230 * 120.11135 * 180.25530 * 17 16 15 19 19 C 1.38337 * 120.16047 * 359.76714 * 18 17 16 20 20 C 1.38239 * 120.04998 * 359.95756 * 19 18 17 21 21 F 1.35093 * 120.05654 * 180.02562 * 20 19 18 22 22 C 1.38794 * 120.02335 * 87.88929 * 16 15 5 23 23 N 1.39848 * 120.07589 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.47883 * 184.97651 * 1 2 3 25 25 H 1.09003 * 109.47315 * 304.97828 * 1 2 3 26 26 H 1.09003 * 109.46751 * 64.97604 * 1 2 3 27 27 H 1.08994 * 109.47735 * 64.90661 * 3 2 1 28 28 H 1.09001 * 109.46976 * 304.90295 * 3 2 1 29 29 H 1.09000 * 109.46960 * 307.81157 * 4 3 2 30 30 H 1.09002 * 109.46856 * 187.81057 * 4 3 2 31 31 H 1.09002 * 109.46744 * 291.72660 * 6 5 4 32 32 H 1.09000 * 109.47270 * 51.73128 * 6 5 4 33 33 H 0.97001 * 120.00041 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47110 * 175.56616 * 15 5 4 35 35 H 1.08994 * 109.46865 * 55.57187 * 15 5 4 36 36 H 1.08000 * 119.94538 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.92009 * 179.75170 * 18 17 16 38 38 H 1.07997 * 119.97144 * 179.97438 * 19 18 17 39 39 H 0.97002 * 119.99407 * 179.72270 * 23 22 16 40 40 H 0.97001 * 120.00440 * 359.45062 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5307 1.1866 -0.1235 5 7 3.8751 0.6721 -1.4556 6 6 3.5462 -0.7550 -1.5699 7 6 3.7209 -1.1978 -2.9998 8 1 4.1168 -0.5109 -3.7333 9 6 3.3753 -2.4797 -3.3717 10 7 2.8015 -3.2840 -2.5037 11 14 3.7220 -3.0740 -5.1084 12 1 5.0195 -3.7959 -5.1347 13 1 2.6371 -3.9896 -5.5441 14 1 3.7852 -1.9088 -6.0269 15 6 5.2914 0.9124 -1.7627 16 6 5.5446 2.3960 -1.8376 17 6 5.4469 3.0540 -3.0489 18 6 5.6839 4.4139 -3.1205 19 6 6.0151 5.1227 -1.9796 20 6 6.1091 4.4722 -0.7634 21 9 6.4320 5.1644 0.3509 22 6 5.8704 3.1037 -0.6890 23 7 5.9649 2.4415 0.5391 24 1 -0.3635 -1.0237 0.0891 25 1 -0.3634 0.5891 0.8420 26 1 -0.3633 0.4347 -0.9312 27 1 1.7600 1.8147 0.9306 28 1 1.6208 1.8765 -0.8428 29 1 3.9047 0.5024 0.6381 30 1 3.9842 2.1681 0.0154 31 1 4.2097 -1.3334 -0.9269 32 1 2.5125 -0.9154 -1.2636 33 1 2.5587 -4.1860 -2.7652 34 1 5.5387 0.4528 -2.7197 35 1 5.9119 0.4769 -0.9796 36 1 5.1885 2.5041 -3.9418 37 1 5.6106 4.9243 -4.0694 38 1 6.2000 6.1851 -2.0390 39 1 6.1966 2.9366 1.3405 40 1 5.7948 1.4879 0.5904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602465160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:06 Heat of formation + Delta-G solvation = -48.329871 kcal Electronic energy + Delta-G solvation = -22863.531547 eV Core-core repulsion = 19400.308292 eV Total energy + Delta-G solvation = -3463.223255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.64705 -39.56154 -37.63015 -35.91381 -34.38128 -32.49081 -31.14824 -29.32669 -28.45562 -26.84191 -25.75956 -24.59689 -22.33416 -21.96554 -21.51330 -19.73090 -17.45436 -17.14006 -16.63588 -16.32282 -15.77736 -15.53781 -15.45207 -14.92214 -14.81525 -14.38614 -14.27943 -13.95507 -13.67234 -13.43301 -12.68996 -12.51498 -12.33157 -11.81040 -11.65499 -11.56047 -11.23688 -11.18350 -11.00441 -10.79387 -10.75774 -10.50291 -10.33554 -10.28395 -9.72375 -9.22021 -8.87987 -8.45475 -8.22673 -7.41437 -7.18060 -5.93620 -3.93220 1.43413 1.63694 3.34415 3.41382 3.44608 3.85790 3.90162 4.38939 4.44265 4.48368 4.93180 5.03354 5.17829 5.40670 5.43489 5.48637 5.56193 5.72517 5.76900 5.86311 5.88041 5.89205 6.03174 6.14730 6.18639 6.24729 6.30261 6.36771 6.53697 6.58062 6.85898 7.02957 7.41867 7.50809 7.55245 7.75269 7.78003 7.87775 8.27816 8.37772 8.63810 9.14861 9.68410 11.16810 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.005682 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.433822 B = 4926.461172 C = 6099.687125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.070 3.930 4 C 0.040 3.960 5 N -0.523 5.523 6 C 0.178 3.822 7 C -0.507 4.507 8 H 0.060 0.940 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.102 3.898 16 C -0.115 4.115 17 C -0.060 4.060 18 C -0.153 4.153 19 C -0.116 4.116 20 C 0.008 3.992 21 F -0.151 7.151 22 C 0.190 3.810 23 N -0.875 5.875 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.088 0.912 31 H -0.022 1.022 32 H 0.081 0.919 33 H 0.258 0.742 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.397 0.603 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 13.585 4.519 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.285 6.285 3 C -0.007 4.007 4 C -0.089 4.089 5 N -0.248 5.248 6 C 0.054 3.946 7 C -0.546 4.546 8 H 0.078 0.922 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.719 3.281 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.026 4.026 16 C -0.120 4.120 17 C -0.079 4.079 18 C -0.173 4.173 19 C -0.136 4.136 20 C -0.016 4.016 21 F -0.130 7.130 22 C 0.084 3.916 23 N -0.418 5.418 24 H 0.099 0.901 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.106 0.894 31 H -0.004 1.004 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.225 0.775 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.849 13.491 4.208 14.416 hybrid contribution 0.475 -0.677 0.245 0.862 sum 3.324 12.814 4.453 13.967 Atomic orbital electron populations 1.22633 0.82560 1.02154 0.98924 1.88148 1.18519 1.27009 1.94796 1.22492 0.94272 0.85315 0.98635 1.22498 0.94152 1.00323 0.91961 1.62300 1.15960 1.22347 1.24210 1.20207 0.99065 0.79103 0.96214 1.21211 1.41917 0.96705 0.94759 0.92192 1.24942 0.95348 0.97028 0.97101 1.69991 1.41306 1.07372 1.34592 0.86608 0.77758 0.78687 0.85071 1.20961 1.21395 1.19842 1.20872 0.90271 0.88939 1.02489 1.19569 1.04197 0.97001 0.91251 1.20972 0.95669 0.93872 0.97407 1.20753 1.04509 0.94342 0.97690 1.20815 1.01557 1.00064 0.91117 1.17071 1.12546 0.88469 0.83529 1.91394 1.91352 1.79157 1.51080 1.17617 0.96783 0.89649 0.87540 1.42798 1.80198 1.12121 1.06728 0.90050 0.95373 0.94383 0.94561 0.92867 0.95415 0.89394 1.00391 0.90180 0.93186 0.88290 0.95908 0.85046 0.85710 0.85520 0.77517 0.76236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.37 -7.40 7.67 -35.23 -0.27 -7.67 16 3 C 0.07 1.23 6.22 37.16 0.23 1.46 16 4 C 0.04 0.71 4.13 -3.82 -0.02 0.69 16 5 N -0.52 -10.94 4.46 -237.52 -1.06 -12.00 16 6 C 0.18 4.60 4.49 -4.98 -0.02 4.58 16 7 C -0.51 -14.02 8.48 -34.44 -0.29 -14.31 16 8 H 0.06 1.62 6.86 -52.48 -0.36 1.26 16 9 C 0.06 1.61 5.45 -17.82 -0.10 1.51 16 10 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 11 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.10 1.90 4.74 -4.98 -0.02 1.88 16 16 C -0.11 -1.84 4.97 -104.43 -0.52 -2.36 16 17 C -0.06 -0.88 9.69 -39.60 -0.38 -1.27 16 18 C -0.15 -1.93 10.04 -39.55 -0.40 -2.33 16 19 C -0.12 -1.47 10.02 -39.54 -0.40 -1.86 16 20 C 0.01 0.11 7.31 -39.26 -0.29 -0.18 16 21 F -0.15 -2.09 16.64 2.25 0.04 -2.05 16 22 C 0.19 2.78 5.48 -83.67 -0.46 2.32 16 23 N -0.88 -11.23 7.52 32.46 0.24 -10.98 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.51 7.67 -51.93 -0.40 0.11 16 30 H 0.09 1.42 4.21 -51.93 -0.22 1.20 16 31 H -0.02 -0.61 8.14 -51.93 -0.42 -1.03 16 32 H 0.08 2.25 4.99 -51.93 -0.26 1.99 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.10 2.00 6.38 -51.93 -0.33 1.67 16 35 H 0.02 0.42 6.66 -51.93 -0.35 0.07 16 36 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.40 4.33 8.32 -40.82 -0.34 3.99 16 40 H 0.41 5.41 5.29 -40.82 -0.22 5.20 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -30.66 324.17 -7.41 -38.07 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.41 Total: 7.28 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.55 Total: -8.19 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.08 Total: -48.78 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.27 Total: -7.67 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.66 -7.41 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602465160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.263 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds