Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47399 * 2 1 4 4 C 1.33644 * 126.03329 * 89.99976 * 3 2 1 5 5 N 1.31779 * 114.49799 * 180.02562 * 4 3 2 6 6 C 1.29031 * 117.12549 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.91671 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46922 * 90.02800 * 7 6 5 9 9 C 1.46898 * 110.99738 * 66.04957 * 8 7 6 10 10 C 1.46903 * 111.00121 * 189.99927 * 8 7 6 11 11 C 1.52999 * 109.47368 * 170.00139 * 10 8 7 12 12 H 1.09001 * 109.46617 * 55.00168 * 11 10 8 13 13 C 1.53005 * 109.47107 * 295.00343 * 11 10 8 14 14 C 1.53002 * 109.47329 * 174.99975 * 11 10 8 15 15 C 1.50696 * 109.46919 * 185.00033 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 S 1.70975 * 110.16721 * 0.23231 * 6 5 4 24 24 H 1.08997 * 109.46904 * 299.99958 * 1 2 3 25 25 H 1.09001 * 109.46695 * 59.99720 * 1 2 3 26 26 H 1.08999 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46717 * 240.00191 * 2 1 3 28 28 H 1.08998 * 109.47299 * 120.00691 * 2 1 3 29 29 H 1.07995 * 122.74869 * 0.02562 * 4 3 2 30 30 H 1.09006 * 109.47563 * 330.03273 * 7 6 5 31 31 H 1.08995 * 109.47562 * 210.03154 * 7 6 5 32 32 H 1.09000 * 109.47224 * 183.95499 * 9 8 7 33 33 H 1.09002 * 109.47093 * 303.95231 * 9 8 7 34 34 H 1.09003 * 109.47296 * 63.95293 * 9 8 7 35 35 H 1.09008 * 109.46872 * 50.00221 * 10 8 7 36 36 H 1.09005 * 109.47368 * 290.00563 * 10 8 7 37 37 H 1.08997 * 109.46686 * 299.99929 * 13 11 10 38 38 H 1.09001 * 109.47004 * 59.99757 * 13 11 10 39 39 H 1.08997 * 109.47105 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46497 * 65.00298 * 14 11 10 41 41 H 1.08999 * 109.46623 * 305.00362 * 14 11 10 42 42 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2945 2.1620 1.0807 5 7 2.7245 3.3794 0.8172 6 6 2.8401 3.7064 -0.4256 7 6 3.3132 5.0474 -0.9243 8 7 4.7730 5.0223 -1.0866 9 6 5.1681 4.0934 -2.1538 10 6 5.2976 6.3706 -1.3414 11 6 6.8251 6.3479 -1.2571 12 1 7.2155 5.5934 -1.9400 13 6 7.2520 6.0110 0.1731 14 6 7.3778 7.7211 -1.6442 15 6 8.8833 7.6647 -1.6803 16 1 9.3947 6.7418 -1.4497 17 6 9.6077 8.7915 -2.0067 18 7 8.9850 9.9169 -2.2812 19 14 11.4739 8.7217 -2.0507 20 1 11.9229 8.3409 -3.4141 21 1 12.0275 10.0547 -1.7015 22 1 11.9549 7.7141 -1.0717 23 16 2.3722 2.4002 -1.4247 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1646 1.7933 2.0875 30 1 3.0409 5.8195 -0.2047 31 1 2.8445 5.2641 -1.8843 32 1 6.2556 4.0412 -2.2058 33 1 4.7666 3.1028 -1.9403 34 1 4.7753 4.4469 -3.1071 35 1 4.9028 7.0610 -0.5959 36 1 4.9934 6.6970 -2.3360 37 1 6.8615 6.7655 0.8560 38 1 6.8582 5.0327 0.4489 39 1 8.3402 5.9944 0.2331 40 1 7.0594 8.4610 -0.9099 41 1 7.0009 8.0001 -2.6282 42 1 8.0160 9.9532 -2.2580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = 22.273779 kcal Electronic energy + Delta-G solvation = -19614.306939 eV Core-core repulsion = 16720.358464 eV Total energy + Delta-G solvation = -2893.948475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91234 -37.93672 -35.03805 -34.28785 -32.15113 -29.99786 -27.54172 -27.02963 -26.32048 -24.78584 -23.44598 -22.78129 -21.62493 -19.28477 -19.05159 -18.17810 -16.79905 -15.75014 -15.69086 -15.17220 -14.70091 -14.51721 -14.28164 -13.90089 -13.69017 -13.59575 -13.15323 -12.83045 -12.69994 -12.31821 -11.98624 -11.90562 -11.74504 -11.61461 -11.44496 -11.25478 -11.11554 -10.98005 -10.62296 -10.27541 -10.07941 -9.72900 -9.65193 -9.42372 -9.32396 -8.94796 -8.45587 -8.26746 -8.16541 -6.29827 -3.97636 0.53045 1.16194 1.59087 2.70273 3.46391 3.50451 3.66023 3.94009 4.20272 4.46220 4.59413 4.63110 4.86602 4.91433 5.12316 5.18326 5.30968 5.34831 5.41561 5.44754 5.47236 5.56688 5.66817 5.70030 5.76194 5.84283 6.00227 6.02582 6.11077 6.31498 6.43770 6.62806 6.90255 7.04136 7.11607 7.21715 7.26642 7.45081 7.62565 7.66773 8.30004 8.53735 8.95633 9.73546 11.10688 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.046257 B = 0.002837 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.172093 B = 9866.625312 C = 9930.228346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.226 4.226 4 C 0.037 3.963 5 N -0.457 5.457 6 C 0.068 3.932 7 C 0.127 3.873 8 N -0.529 5.529 9 C 0.014 3.986 10 C 0.062 3.938 11 C -0.073 4.073 12 H 0.058 0.942 13 C -0.122 4.122 14 C 0.014 3.986 15 C -0.592 4.592 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.069 2.931 20 H -0.289 1.289 21 H -0.285 1.285 22 H -0.289 1.289 23 S 0.110 5.890 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.172 0.828 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.007 0.993 41 H 0.003 0.997 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.637 -18.977 2.533 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.347 4.347 4 C -0.114 4.114 5 N -0.170 5.170 6 C -0.211 4.211 7 C -0.005 4.005 8 N -0.253 5.253 9 C -0.135 4.135 10 C -0.065 4.065 11 C -0.092 4.092 12 H 0.077 0.923 13 C -0.179 4.179 14 C -0.024 4.024 15 C -0.630 4.630 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.898 3.102 20 H -0.216 1.216 21 H -0.211 1.211 22 H -0.215 1.215 23 S 0.365 5.635 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.189 0.811 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.993 -17.960 2.022 24.134 hybrid contribution -1.819 -0.952 0.416 2.094 sum -17.812 -18.912 2.438 26.094 Atomic orbital electron populations 1.21803 0.94252 1.02059 1.02478 1.19976 0.96079 0.88946 1.03446 1.25999 1.11011 1.02505 0.95165 1.21712 1.01008 0.88745 0.99967 1.66231 1.14772 1.17320 1.18710 1.26898 1.02261 1.00839 0.91078 1.20657 0.89532 0.90239 1.00047 1.61956 1.07770 1.10437 1.45155 1.22595 1.02872 0.96175 0.91825 1.22393 0.97767 0.87169 0.99192 1.21089 0.90547 1.00093 0.97450 0.92349 1.21570 1.01043 0.99538 0.95782 1.19261 0.96720 0.91205 0.95182 1.22047 0.91405 0.98812 1.50757 0.93192 1.25818 1.06810 0.92540 0.93958 1.70748 1.11186 1.27254 1.46172 0.83537 0.74602 0.75628 0.76408 1.21588 1.21082 1.21504 1.83973 1.60410 1.07249 1.11901 0.92252 0.92530 0.91890 0.90660 0.89744 0.81084 0.87790 0.92816 0.90043 0.92066 0.95512 0.90972 0.95025 0.94219 0.93781 0.92670 0.97441 0.97881 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.90 37.16 0.37 -0.50 16 2 C -0.04 -0.30 6.47 -27.88 -0.18 -0.48 16 3 C -0.23 -2.21 5.85 -35.92 -0.21 -2.42 16 4 C 0.04 0.42 11.25 -19.18 -0.22 0.20 16 5 N -0.46 -6.42 10.54 -11.86 -0.13 -6.54 16 6 C 0.07 0.89 6.17 -13.46 -0.08 0.80 16 7 C 0.13 1.66 5.54 -4.98 -0.03 1.64 16 8 N -0.53 -8.10 4.21 -244.36 -1.03 -9.13 16 9 C 0.01 0.19 9.10 60.06 0.55 0.74 16 10 C 0.06 1.07 4.35 -3.82 -0.02 1.05 16 11 C -0.07 -1.51 2.26 -90.62 -0.20 -1.72 16 12 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 13 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 14 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 15 C -0.59 -16.87 8.41 -34.44 -0.29 -17.16 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 18 N -0.92 -28.41 13.65 55.43 0.76 -27.66 16 19 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 S 0.11 1.16 21.58 -107.50 -2.32 -1.16 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.10 1.36 7.93 -51.93 -0.41 0.95 16 31 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.08 1.23 6.37 -51.93 -0.33 0.90 16 33 H 0.06 0.79 5.81 -51.93 -0.30 0.49 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 1.24 7.93 -51.92 -0.41 0.82 16 36 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 39 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 40 H 0.01 0.20 8.00 -51.93 -0.42 -0.22 16 41 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 42 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -31.88 349.28 -9.79 -41.67 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.07 Total: -3.61 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.19 Total: -19.51 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.40 Total: -43.33 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.32 Total: -1.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.88 -9.79 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.944 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds