Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47460 * 2 1 4 4 C 1.33645 * 126.03788 * 90.00187 * 3 2 1 5 5 N 1.31774 * 114.50433 * 179.97438 * 4 3 2 6 6 C 1.29028 * 117.12291 * 0.02562 * 5 4 3 7 7 C 1.50699 * 124.91572 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47140 * 90.02229 * 7 6 5 9 9 C 1.46897 * 110.99771 * 293.95489 * 8 7 6 10 10 C 1.46898 * 110.99890 * 170.00136 * 8 7 6 11 11 C 1.53002 * 109.47015 * 190.00371 * 10 8 7 12 12 H 1.09003 * 109.46717 * 304.99535 * 11 10 8 13 13 C 1.53003 * 109.47368 * 64.99661 * 11 10 8 14 14 C 1.52998 * 109.47319 * 184.99830 * 11 10 8 15 15 C 1.50697 * 109.47544 * 174.99556 * 14 11 10 16 16 H 1.08003 * 119.99989 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00417 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00349 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46889 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47465 * 119.99782 * 19 17 15 22 22 H 1.48494 * 109.47329 * 240.00013 * 19 17 15 23 23 S 1.70974 * 110.16860 * 0.22588 * 6 5 4 24 24 H 1.09004 * 109.46730 * 59.99810 * 1 2 3 25 25 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46964 * 300.00263 * 1 2 3 27 27 H 1.09007 * 109.47210 * 239.99885 * 2 1 3 28 28 H 1.08999 * 109.47299 * 120.00636 * 2 1 3 29 29 H 1.08002 * 122.74855 * 0.02562 * 4 3 2 30 30 H 1.09004 * 109.47103 * 330.02330 * 7 6 5 31 31 H 1.09000 * 109.47247 * 210.02207 * 7 6 5 32 32 H 1.08997 * 109.47293 * 60.00221 * 9 8 7 33 33 H 1.09000 * 109.46769 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47106 * 299.99134 * 9 8 7 35 35 H 1.09004 * 109.47244 * 310.00126 * 10 8 7 36 36 H 1.08994 * 109.47665 * 70.00225 * 10 8 7 37 37 H 1.08999 * 109.46978 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.46782 * 300.00275 * 13 11 10 39 39 H 1.09000 * 109.46607 * 60.00443 * 13 11 10 40 40 H 1.08997 * 109.47143 * 294.99978 * 14 11 10 41 41 H 1.09003 * 109.46788 * 54.99603 * 14 11 10 42 42 H 0.97003 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2945 2.1620 1.0807 5 7 2.7255 3.3791 0.8172 6 6 2.8410 3.7060 -0.4256 7 6 3.3151 5.0468 -0.9243 8 7 4.7748 5.0205 -1.0870 9 6 5.4466 4.8729 0.2110 10 6 5.2477 6.2198 -1.7912 11 6 6.7218 6.0454 -2.1621 12 1 7.2968 5.8127 -1.2658 13 6 6.8626 4.9026 -3.1696 14 6 7.2481 7.3407 -2.7835 15 6 8.7281 7.2118 -3.0358 16 1 9.2421 6.2973 -2.7791 17 6 9.4263 8.2613 -3.5944 18 7 8.8006 9.3752 -3.9066 19 14 11.2608 8.1012 -3.9079 20 1 11.7224 6.7590 -3.4709 21 1 11.5319 8.2706 -5.3581 22 1 11.9868 9.1469 -3.1432 23 16 2.3717 2.4004 -1.4247 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.1646 1.7934 2.0875 30 1 3.0435 5.8189 -0.2045 31 1 2.8464 5.2638 -1.8842 32 1 5.1304 3.9412 0.6799 33 1 6.5261 4.8559 0.0615 34 1 5.1818 5.7119 0.8546 35 1 4.6597 6.3645 -2.6976 36 1 5.1365 7.0892 -1.1433 37 1 7.9128 4.7781 -3.4334 38 1 6.4877 3.9798 -2.7268 39 1 6.2876 5.1355 -4.0658 40 1 6.7336 7.5267 -3.7263 41 1 7.0668 8.1710 -2.1008 42 1 9.2917 10.1135 -4.3000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = 25.355064 kcal Electronic energy + Delta-G solvation = -19581.597407 eV Core-core repulsion = 16687.782547 eV Total energy + Delta-G solvation = -2893.814861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90008 -37.77475 -34.91438 -34.09981 -32.05447 -29.95629 -27.61765 -27.09490 -26.38907 -24.75851 -23.38992 -22.78476 -21.43137 -19.35064 -18.78260 -18.07306 -16.43120 -15.66908 -15.57682 -15.10269 -14.65807 -14.42666 -14.25564 -14.10369 -14.01535 -13.30428 -12.83168 -12.66916 -12.45604 -12.31544 -11.97291 -11.86423 -11.68359 -11.47383 -11.34799 -11.17955 -11.07724 -10.83855 -10.71789 -10.28063 -10.26618 -9.66477 -9.58719 -9.29813 -9.15636 -8.96385 -8.84366 -8.31413 -8.09161 -5.96238 -3.97018 0.60362 1.26392 1.71718 2.72247 3.33204 3.40846 3.45025 3.97327 4.35519 4.50248 4.53678 4.68101 4.90290 4.92774 5.22212 5.26588 5.36736 5.39734 5.46498 5.49025 5.54518 5.70918 5.73076 5.80590 5.88457 5.97488 6.07710 6.14382 6.28036 6.39704 6.54642 6.70597 7.00701 7.11007 7.21345 7.29980 7.39298 7.68474 7.71494 7.87084 8.04219 8.48449 9.09540 9.66370 11.15348 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042446 B = 0.002876 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.509282 B = 9733.013735 C = 9858.147699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.233 4.233 4 C 0.035 3.965 5 N -0.474 5.474 6 C 0.064 3.936 7 C 0.125 3.875 8 N -0.533 5.533 9 C 0.025 3.975 10 C 0.061 3.939 11 C -0.080 4.080 12 H 0.057 0.943 13 C -0.123 4.123 14 C 0.027 3.973 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 S 0.143 5.857 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.021 -16.729 7.453 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.354 4.354 4 C -0.116 4.116 5 N -0.188 5.188 6 C -0.214 4.214 7 C -0.006 4.006 8 N -0.258 5.258 9 C -0.123 4.123 10 C -0.066 4.066 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.180 4.180 14 C -0.011 4.011 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.399 5.601 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.187 0.813 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.785 -16.680 6.402 24.514 hybrid contribution 0.762 0.487 1.232 1.528 sum -16.024 -16.193 7.634 24.026 Atomic orbital electron populations 1.21800 0.94330 1.02001 1.02449 1.19958 0.96015 0.89046 1.03385 1.26025 1.11186 1.02594 0.95622 1.21621 1.01351 0.88820 0.99856 1.66305 1.16062 1.17580 1.18870 1.26878 1.02111 1.01251 0.91115 1.20650 0.90412 0.88833 1.00707 1.62062 1.01987 1.40997 1.20719 1.22419 1.00117 1.00586 0.89187 1.22376 0.98509 0.88544 0.97172 1.21237 0.91528 0.98597 0.98571 0.92423 1.21585 1.01227 0.97139 0.98064 1.19134 0.95706 0.90608 0.95630 1.21262 0.93691 0.99809 1.40085 0.92536 1.25019 0.98194 0.95457 0.95930 1.69974 1.35761 1.04421 1.43545 0.86583 0.85860 0.78035 0.77813 1.19761 1.21092 1.21142 1.84013 1.59080 1.06206 1.10843 0.92485 0.91957 0.92337 0.90637 0.89902 0.81339 0.91898 0.88806 0.91832 0.90597 0.95613 0.91106 0.94882 0.92756 0.93999 0.94162 0.96540 0.96902 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.04 -0.31 6.47 -27.89 -0.18 -0.49 16 3 C -0.23 -2.30 5.85 -35.92 -0.21 -2.51 16 4 C 0.03 0.39 11.25 -19.19 -0.22 0.17 16 5 N -0.47 -6.34 9.76 -11.86 -0.12 -6.45 16 6 C 0.06 0.83 6.04 -13.46 -0.08 0.75 16 7 C 0.13 1.64 5.54 -4.97 -0.03 1.61 16 8 N -0.53 -8.11 4.21 -244.37 -1.03 -9.14 16 9 C 0.03 0.38 9.16 60.06 0.55 0.93 16 10 C 0.06 1.04 4.35 -3.82 -0.02 1.03 16 11 C -0.08 -1.64 2.26 -90.62 -0.20 -1.85 16 12 H 0.06 1.21 6.26 -51.93 -0.33 0.88 16 13 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 14 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 15 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 16 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 S 0.14 1.57 23.18 -107.50 -2.49 -0.92 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 32 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 33 H 0.08 1.21 6.21 -51.93 -0.32 0.89 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 36 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 38 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -30.58 351.99 -9.97 -40.56 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -7.16 Total: -4.36 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -0.20 Total: -15.49 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.41 Total: -41.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.49 Total: -0.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.58 -9.97 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.910 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds