Wall clock time and date at job start Tue Mar 31 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47460 * 2 1 4 4 C 1.33645 * 126.03788 * 90.00187 * 3 2 1 5 5 N 1.31774 * 114.50433 * 179.97438 * 4 3 2 6 6 C 1.29028 * 117.12291 * 0.02562 * 5 4 3 7 7 C 1.50699 * 124.91572 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47140 * 90.02229 * 7 6 5 9 9 C 1.46897 * 110.99771 * 293.95489 * 8 7 6 10 10 C 1.46898 * 110.99890 * 170.00136 * 8 7 6 11 11 C 1.53002 * 109.47015 * 190.00371 * 10 8 7 12 12 H 1.09003 * 109.46717 * 304.99535 * 11 10 8 13 13 C 1.53003 * 109.47368 * 64.99661 * 11 10 8 14 14 C 1.52998 * 109.47319 * 184.99830 * 11 10 8 15 15 C 1.50697 * 109.47544 * 174.99556 * 14 11 10 16 16 H 1.08003 * 119.99989 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00417 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00051 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00349 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46889 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47465 * 119.99782 * 19 17 15 22 22 H 1.48494 * 109.47329 * 240.00013 * 19 17 15 23 23 S 1.70974 * 110.16860 * 0.22588 * 6 5 4 24 24 H 1.09004 * 109.46730 * 59.99810 * 1 2 3 25 25 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46964 * 300.00263 * 1 2 3 27 27 H 1.09007 * 109.47210 * 239.99885 * 2 1 3 28 28 H 1.08999 * 109.47299 * 120.00636 * 2 1 3 29 29 H 1.08002 * 122.74855 * 0.02562 * 4 3 2 30 30 H 1.09004 * 109.47103 * 330.02330 * 7 6 5 31 31 H 1.09000 * 109.47247 * 210.02207 * 7 6 5 32 32 H 1.08997 * 109.47293 * 60.00221 * 9 8 7 33 33 H 1.09000 * 109.46769 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47106 * 299.99134 * 9 8 7 35 35 H 1.09004 * 109.47244 * 310.00126 * 10 8 7 36 36 H 1.08994 * 109.47665 * 70.00225 * 10 8 7 37 37 H 1.08999 * 109.46978 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.46782 * 300.00275 * 13 11 10 39 39 H 1.09000 * 109.46607 * 60.00443 * 13 11 10 40 40 H 1.08997 * 109.47143 * 294.99978 * 14 11 10 41 41 H 1.09003 * 109.46788 * 54.99603 * 14 11 10 42 42 H 0.97003 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2945 2.1620 1.0807 5 7 2.7255 3.3791 0.8172 6 6 2.8410 3.7060 -0.4256 7 6 3.3151 5.0468 -0.9243 8 7 4.7748 5.0205 -1.0870 9 6 5.4466 4.8729 0.2110 10 6 5.2477 6.2198 -1.7912 11 6 6.7218 6.0454 -2.1621 12 1 7.2968 5.8127 -1.2658 13 6 6.8626 4.9026 -3.1696 14 6 7.2481 7.3407 -2.7835 15 6 8.7281 7.2118 -3.0358 16 1 9.2421 6.2973 -2.7791 17 6 9.4263 8.2613 -3.5944 18 7 8.8006 9.3752 -3.9066 19 14 11.2608 8.1012 -3.9079 20 1 11.7224 6.7590 -3.4709 21 1 11.5319 8.2706 -5.3581 22 1 11.9868 9.1469 -3.1432 23 16 2.3717 2.4004 -1.4247 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.1646 1.7934 2.0875 30 1 3.0435 5.8189 -0.2045 31 1 2.8464 5.2638 -1.8842 32 1 5.1304 3.9412 0.6799 33 1 6.5261 4.8559 0.0615 34 1 5.1818 5.7119 0.8546 35 1 4.6597 6.3645 -2.6976 36 1 5.1365 7.0892 -1.1433 37 1 7.9128 4.7781 -3.4334 38 1 6.4877 3.9798 -2.7268 39 1 6.2876 5.1355 -4.0658 40 1 6.7336 7.5267 -3.7263 41 1 7.0668 8.1710 -2.1008 42 1 9.2917 10.1135 -4.3000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602479839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:22 Heat of formation + Delta-G solvation = 7.963098 kcal Electronic energy + Delta-G solvation = -19582.351579 eV Core-core repulsion = 16687.782547 eV Total energy + Delta-G solvation = -2894.569033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79778 -39.09554 -36.30149 -35.13102 -33.99380 -30.96447 -28.95791 -28.57382 -27.79841 -25.99182 -24.86357 -23.59818 -22.80299 -20.53900 -20.08675 -18.94598 -18.50105 -17.00849 -16.53071 -16.40885 -16.21236 -15.53470 -15.37901 -15.13143 -14.88587 -14.46786 -14.32544 -14.15187 -13.73414 -13.36562 -13.22106 -13.15099 -12.77444 -12.75447 -12.58021 -12.55245 -12.47725 -12.37677 -12.20270 -11.97220 -11.69784 -11.36584 -11.05094 -10.94637 -10.55196 -10.51837 -10.14346 -9.74547 -9.32782 -8.16224 -6.24601 -0.25909 0.42887 0.86137 1.40166 1.40897 1.53620 1.84018 2.42849 2.92371 3.17407 3.32876 3.89462 3.92839 4.06676 4.15468 4.27248 4.35230 4.41772 4.47831 4.55489 4.59799 4.60798 4.65281 4.80774 4.88864 4.92671 4.96259 5.05098 5.09585 5.15616 5.27048 5.30639 5.37254 5.48408 5.52722 5.57269 5.80602 5.90972 6.00276 6.02859 6.33245 6.81352 6.91387 7.43411 8.95948 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042446 B = 0.002876 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.509282 B = 9733.013735 C = 9858.147699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.218 4.218 4 C 0.015 3.985 5 N -0.494 5.494 6 C 0.039 3.961 7 C 0.127 3.873 8 N -0.533 5.533 9 C 0.032 3.968 10 C 0.072 3.928 11 C -0.072 4.072 12 H 0.052 0.948 13 C -0.112 4.112 14 C 0.033 3.967 15 C -0.525 4.525 16 H 0.059 0.941 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.959 3.041 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.281 1.281 23 S 0.155 5.845 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.189 0.811 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.040 0.960 40 H -0.006 1.006 41 H -0.014 1.014 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.376 -18.886 7.678 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.340 4.340 4 C -0.136 4.136 5 N -0.209 5.209 6 C -0.238 4.238 7 C -0.004 4.004 8 N -0.257 5.257 9 C -0.116 4.116 10 C -0.055 4.055 11 C -0.091 4.091 12 H 0.070 0.930 13 C -0.169 4.169 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.784 3.216 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.206 1.206 23 S 0.410 5.590 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.205 0.795 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.013 0.987 41 H 0.004 0.996 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.148 -18.850 6.636 26.333 hybrid contribution 0.789 1.090 1.192 1.797 sum -16.359 -17.760 7.828 25.383 Atomic orbital electron populations 1.21786 0.93479 1.03042 1.02020 1.20127 0.96623 0.87230 1.04554 1.26441 1.09317 1.03532 0.94671 1.21952 1.02042 0.88412 1.01156 1.66284 1.16378 1.18865 1.19393 1.26727 1.03785 1.01711 0.91583 1.20655 0.88730 0.89465 1.01531 1.61982 1.03579 1.39514 1.20651 1.22325 0.99430 1.00641 0.89191 1.22105 0.96438 0.89241 0.97717 1.21032 0.93559 0.96268 0.98199 0.92954 1.21468 1.00189 0.97441 0.97845 1.19014 0.94888 0.92370 0.94211 1.21645 0.95025 0.99885 1.39785 0.92302 1.25921 1.03179 0.95112 0.95736 1.70101 1.37759 1.05265 1.44443 0.85487 0.79888 0.78402 0.77819 1.18715 1.20471 1.20644 1.83924 1.58545 1.05579 1.10965 0.93165 0.90220 0.92539 0.89923 0.88243 0.79457 0.92159 0.87377 0.91539 0.91592 0.95777 0.90313 0.95578 0.94475 0.91981 0.94040 0.98738 0.99564 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.05 -0.51 6.47 29.84 0.19 -0.31 16 3 C -0.22 -3.85 5.85 24.64 0.14 -3.70 16 4 C 0.01 0.30 11.25 83.66 0.94 1.24 16 5 N -0.49 -12.69 9.76 -191.45 -1.87 -14.56 16 6 C 0.04 0.96 6.04 88.52 0.53 1.50 16 7 C 0.13 3.21 5.54 85.56 0.47 3.69 16 8 N -0.53 -15.79 4.21 -927.05 -3.90 -19.69 16 9 C 0.03 0.97 9.16 127.69 1.17 2.14 16 10 C 0.07 2.47 4.35 86.30 0.38 2.85 16 11 C -0.07 -2.94 2.26 -10.79 -0.02 -2.97 16 12 H 0.05 2.20 6.26 -2.39 -0.01 2.19 16 13 C -0.11 -4.28 8.89 71.98 0.64 -3.64 16 14 C 0.03 1.72 4.45 29.85 0.13 1.85 16 15 C -0.53 -29.80 8.41 25.60 0.22 -29.59 16 16 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 18 N -0.93 -57.22 13.29 21.44 0.28 -56.93 16 19 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 S 0.16 3.15 23.18 -56.49 -1.31 1.84 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.06 1.55 8.12 -2.38 -0.02 1.53 16 31 H 0.11 2.38 7.93 -2.39 -0.02 2.36 16 32 H 0.07 1.95 6.70 -2.39 -0.02 1.94 16 33 H 0.07 2.08 6.21 -2.39 -0.01 2.07 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 2.56 7.93 -2.38 -0.02 2.54 16 36 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 37 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 38 H 0.06 2.11 7.75 -2.39 -0.02 2.09 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -65.44 351.99 2.18 -63.26 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.97 Total: 6.54 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 5.97 Total: -27.29 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -5.48 Total: -91.18 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.31 Total: 1.84 kcal Total: -65.44 2.18 -63.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.223 kcal (2) G-P(sol) polarization free energy of solvation -65.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds