Wall clock time and date at job start Tue Mar 31 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.29029 * 124.91512 * 90.00202 * 3 2 1 5 5 C 1.31775 * 117.12486 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.75003 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47288 * 305.02622 * 6 5 4 8 8 N 1.46903 * 109.47219 * 179.97438 * 7 6 5 9 9 C 1.46892 * 111.00235 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47486 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47153 * 54.99924 * 10 9 8 12 12 C 1.53002 * 109.46817 * 295.00155 * 10 9 8 13 13 C 1.53000 * 109.47060 * 175.00243 * 10 9 8 14 14 C 1.50703 * 109.46801 * 184.99876 * 13 10 9 15 15 H 1.07998 * 120.00413 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99680 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47312 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47105 * 120.00272 * 18 16 14 21 21 H 1.48501 * 109.47040 * 239.99861 * 18 16 14 22 22 C 1.33639 * 114.50283 * 0.23206 * 5 4 3 23 23 S 1.70973 * 124.91917 * 270.00150 * 3 2 1 24 24 H 1.08995 * 109.47494 * 59.99849 * 1 2 3 25 25 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46902 * 299.99608 * 1 2 3 27 27 H 1.09002 * 109.47231 * 239.99685 * 2 1 3 28 28 H 1.09001 * 109.47208 * 120.00464 * 2 1 3 29 29 H 1.09001 * 109.47629 * 185.02586 * 6 5 4 30 30 H 1.09001 * 109.47141 * 65.02576 * 6 5 4 31 31 H 1.08991 * 109.46963 * 60.00237 * 7 6 5 32 32 H 1.09001 * 109.46992 * 300.00045 * 7 6 5 33 33 H 1.00902 * 111.00150 * 303.95822 * 8 7 6 34 34 H 1.09000 * 109.46781 * 59.99783 * 9 8 7 35 35 H 1.09008 * 109.47124 * 300.00142 * 9 8 7 36 36 H 1.08996 * 109.47407 * 60.00219 * 12 10 9 37 37 H 1.09000 * 109.46986 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47075 * 299.99262 * 12 10 9 39 39 H 1.09002 * 109.47069 * 304.99600 * 13 10 9 40 40 H 1.08991 * 109.47625 * 64.99919 * 13 10 9 41 41 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 42 42 H 1.07996 * 126.03889 * 179.76362 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7142 3.3478 0.8794 6 6 3.0403 4.2714 2.0246 7 6 1.8268 4.3851 2.9496 8 7 2.1449 5.2850 4.0663 9 6 1.0001 5.4191 4.9770 10 6 1.3685 6.3621 6.1241 11 1 1.7134 7.3125 5.7167 12 6 2.4822 5.7330 6.9637 13 6 0.1393 6.6001 7.0034 14 6 0.4681 7.6230 8.0601 15 1 1.4549 8.0600 8.1003 16 6 -0.4913 8.0018 8.9751 17 7 -1.6935 7.4709 8.9253 18 14 -0.0840 9.2703 10.2845 19 1 1.3249 9.7116 10.1249 20 1 -0.9879 10.4395 10.1392 21 1 -0.2654 8.6686 11.6299 22 6 2.8381 3.7116 -0.4005 23 16 2.3585 2.3435 -1.4019 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2940 5.2575 1.6354 30 1 3.8869 3.8725 2.5834 31 1 1.5732 3.3993 3.3390 32 1 0.9802 4.7840 2.3909 33 1 2.9662 4.9709 4.5612 34 1 0.7400 4.4403 5.3800 35 1 0.1481 5.8258 4.4321 36 1 3.3579 5.5635 6.3373 37 1 2.7450 6.4050 7.7807 38 1 2.1373 4.7827 7.3712 39 1 -0.6827 6.9652 6.3876 40 1 -0.1523 5.6649 7.4813 41 1 -2.3683 7.7371 9.5692 42 1 3.1740 4.6738 -0.7579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602530945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:13 Heat of formation + Delta-G solvation = 10.089955 kcal Electronic energy + Delta-G solvation = -19015.532727 eV Core-core repulsion = 16121.055922 eV Total energy + Delta-G solvation = -2894.476805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20847 -37.07145 -34.99269 -33.93699 -32.22653 -30.79400 -28.62674 -26.78248 -25.79276 -25.12475 -23.14787 -21.96524 -21.59744 -19.94307 -18.91790 -17.73299 -16.37858 -15.97426 -15.42569 -15.17148 -14.84820 -14.68549 -14.36571 -13.86197 -13.74643 -13.48816 -13.08561 -12.69314 -12.54033 -12.27231 -12.10965 -11.97327 -11.64571 -11.47957 -11.45677 -11.31914 -11.03930 -10.84735 -10.68312 -10.29440 -10.14427 -9.83682 -9.67324 -9.63773 -9.13003 -8.95594 -8.86145 -8.30191 -8.08295 -5.94614 -3.95544 0.47367 1.11709 1.49035 2.56643 3.34199 3.41649 3.45892 3.75388 4.38870 4.51475 4.59482 4.76573 4.83898 4.99729 5.10399 5.15941 5.23840 5.41210 5.42748 5.46818 5.56332 5.60285 5.80554 5.82771 5.83113 5.93758 6.04552 6.11408 6.15684 6.33042 6.52147 6.61265 6.99234 7.15208 7.21869 7.41812 7.54773 7.71130 7.74604 7.90535 8.06195 8.50075 9.11188 9.67707 11.17030 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033655 B = 0.002419 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.768999 B =11571.010618 C =11989.982915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.054 3.946 4 N -0.465 5.465 5 C 0.078 3.922 6 C -0.043 4.043 7 C 0.067 3.933 8 N -0.692 5.692 9 C 0.065 3.935 10 C -0.084 4.084 11 H 0.065 0.935 12 C -0.134 4.134 13 C 0.027 3.973 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.258 4.258 23 S 0.103 5.897 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.337 0.663 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.716 -14.144 -22.180 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.224 4.224 4 N -0.180 5.180 5 C -0.053 4.053 6 C -0.083 4.083 7 C -0.063 4.063 8 N -0.324 5.324 9 C -0.063 4.063 10 C -0.103 4.103 11 H 0.083 0.917 12 C -0.191 4.191 13 C -0.011 4.011 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.397 4.397 23 S 0.357 5.643 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.251 -13.996 -23.023 28.179 hybrid contribution 0.288 0.471 1.847 1.928 sum 8.539 -13.524 -21.176 26.538 Atomic orbital electron populations 1.21775 0.93334 1.02652 1.02863 1.20233 0.96882 0.87512 1.04209 1.27104 1.02703 1.01790 0.90830 1.66080 1.14498 1.05922 1.31481 1.20311 0.99548 0.91147 0.94336 1.20198 0.98906 0.96710 0.92510 1.21790 0.96701 0.95168 0.92652 1.60575 1.07569 1.51738 1.12485 1.22120 0.92390 0.98401 0.93411 1.21221 0.98177 0.97104 0.93784 0.91653 1.21741 0.97094 1.00504 0.99789 1.19120 0.91512 0.96719 0.93704 1.21284 0.97712 1.22765 1.13172 0.92498 1.25030 0.95116 0.96622 0.97871 1.69978 1.03484 1.43569 1.36683 0.86575 0.78425 0.81514 0.81723 1.19749 1.21104 1.21134 1.26836 1.12942 1.04262 0.95655 1.83904 1.61072 1.06092 1.13189 0.92390 0.91313 0.91741 0.89727 0.88730 0.89332 0.90288 0.94599 0.91474 0.84415 0.95815 0.91587 0.94938 0.91883 0.94036 0.96677 0.96745 0.93178 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.05 -0.33 6.52 -27.89 -0.18 -0.52 16 3 C 0.05 0.54 6.64 -13.46 -0.09 0.45 16 4 N -0.47 -5.72 10.34 -8.06 -0.08 -5.81 16 5 C 0.08 0.91 6.08 -84.23 -0.51 0.39 16 6 C -0.04 -0.49 5.97 -27.88 -0.17 -0.65 16 7 C 0.07 0.92 5.59 -3.82 -0.02 0.90 16 8 N -0.69 -10.66 6.50 -113.78 -0.74 -11.40 16 9 C 0.07 1.19 5.14 -3.83 -0.02 1.18 16 10 C -0.08 -1.76 2.55 -90.62 -0.23 -2.00 16 11 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 12 C -0.13 -2.56 8.77 37.16 0.33 -2.24 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 14 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 15 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.26 -2.49 11.07 29.12 0.32 -2.17 16 23 S 0.10 0.86 23.18 -107.50 -2.49 -1.63 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.34 4.88 6.99 -39.29 -0.27 4.60 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 37 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -31.42 356.68 -10.18 -41.60 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.24 Total: -0.41 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.72 Total: -18.02 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.09 Total: -43.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.42 -10.18 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.688 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds