Wall clock time and date at job start Tue Mar 31 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47221 * 2 1 4 4 N 1.29026 * 124.91557 * 90.00123 * 3 2 1 5 5 C 1.31782 * 117.12477 * 180.02562 * 4 3 2 6 6 C 1.50698 * 122.74799 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47212 * 305.01839 * 6 5 4 8 8 N 1.46900 * 109.47059 * 180.02562 * 7 6 5 9 9 C 1.46897 * 110.99727 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99654 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00472 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99774 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.33640 * 114.49922 * 0.22561 * 5 4 3 23 23 S 1.70975 * 124.91874 * 270.00641 * 3 2 1 24 24 H 1.09005 * 109.46730 * 299.99606 * 1 2 3 25 25 H 1.08998 * 109.47400 * 59.99374 * 1 2 3 26 26 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46730 * 240.00394 * 2 1 3 28 28 H 1.09004 * 109.46952 * 120.00099 * 2 1 3 29 29 H 1.09008 * 109.46884 * 185.01788 * 6 5 4 30 30 H 1.08999 * 109.47507 * 65.02573 * 6 5 4 31 31 H 1.08995 * 109.46999 * 60.00043 * 7 6 5 32 32 H 1.09003 * 109.46925 * 300.00280 * 7 6 5 33 33 H 1.00902 * 110.99874 * 303.95251 * 8 7 6 34 34 H 1.08997 * 109.47423 * 60.00043 * 9 8 7 35 35 H 1.09001 * 109.47481 * 299.99662 * 9 8 7 36 36 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 37 37 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 38 38 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 40 40 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 41 41 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 42 42 H 1.08007 * 126.03431 * 179.77050 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7133 3.3482 0.8794 6 6 3.0393 4.2718 2.0246 7 6 1.8261 4.3846 2.9500 8 7 2.1436 5.2855 4.0661 9 6 0.9990 5.4187 4.9771 10 6 1.3673 6.3618 6.1243 11 1 2.2726 6.0026 6.6136 12 6 1.6098 7.7675 5.5710 13 6 0.2220 6.4033 7.1379 14 6 0.6328 7.2341 8.3263 15 1 1.6127 7.6874 8.3554 16 6 -0.2420 7.4154 9.3764 17 7 -1.4372 6.8678 9.3385 18 14 0.2670 8.4457 10.8491 19 1 -0.8468 8.4910 11.8303 20 1 1.4640 7.8406 11.4865 21 1 0.5884 9.8245 10.4011 22 6 2.8364 3.7122 -0.4006 23 16 2.3585 2.3435 -1.4019 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.2922 5.2581 1.6353 30 1 3.8864 3.8735 2.5830 31 1 1.5732 3.3985 3.3393 32 1 0.9790 4.7830 2.3916 33 1 2.9655 4.9725 4.5608 34 1 0.7401 4.4399 5.3809 35 1 0.1463 5.8241 4.4325 36 1 2.4257 7.7379 4.8488 37 1 0.7044 8.1266 5.0817 38 1 1.8726 8.4392 6.3882 39 1 -0.0100 5.3900 7.4659 40 1 -0.6591 6.8453 6.6728 41 1 -1.7017 6.3330 8.5737 42 1 3.1716 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602530946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:19 Heat of formation + Delta-G solvation = 5.941607 kcal Electronic energy + Delta-G solvation = -19041.859645 eV Core-core repulsion = 16147.202953 eV Total energy + Delta-G solvation = -2894.656691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24138 -37.10034 -35.08254 -34.09351 -32.33239 -30.81909 -28.63559 -26.39277 -25.80954 -24.98840 -23.08227 -22.08864 -21.67894 -19.97973 -19.29440 -17.74479 -16.66137 -15.98421 -15.42859 -15.19857 -14.85076 -14.63920 -14.23622 -13.77632 -13.70235 -13.60088 -13.28213 -12.90610 -12.64795 -12.27869 -12.02958 -11.85258 -11.70071 -11.51008 -11.43501 -11.30167 -11.09162 -10.94296 -10.63770 -10.17390 -10.05626 -9.86056 -9.77248 -9.67094 -9.40689 -8.95011 -8.42769 -8.26143 -8.14090 -6.28849 -3.96631 0.44210 1.08633 1.45937 2.53239 3.47450 3.49704 3.68171 3.72303 4.33497 4.55021 4.61012 4.73655 4.81315 4.96025 5.05860 5.10294 5.20538 5.39504 5.43380 5.47669 5.52067 5.57159 5.66478 5.78276 5.80961 5.89717 5.99704 6.10140 6.11374 6.36358 6.49148 6.63267 6.93141 7.10323 7.15716 7.31212 7.46147 7.51467 7.60604 7.67635 8.31116 8.54278 8.96424 9.74879 11.11626 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.002449 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.890001 B =11428.378501 C =12024.619446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.055 3.945 4 N -0.466 5.466 5 C 0.078 3.922 6 C -0.042 4.042 7 C 0.067 3.933 8 N -0.689 5.689 9 C 0.064 3.936 10 C -0.075 4.075 11 H 0.055 0.945 12 C -0.122 4.122 13 C 0.014 3.986 14 C -0.593 4.593 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 1.067 2.933 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.288 1.288 22 C -0.258 4.258 23 S 0.104 5.896 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.337 0.663 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.003 0.997 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -12.045 -23.888 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.224 4.224 4 N -0.180 5.180 5 C -0.054 4.054 6 C -0.083 4.083 7 C -0.063 4.063 8 N -0.319 5.319 9 C -0.064 4.064 10 C -0.094 4.094 11 H 0.073 0.927 12 C -0.179 4.179 13 C -0.024 4.024 14 C -0.631 4.631 15 H 0.068 0.932 16 C -0.192 4.192 17 N -0.553 5.553 18 Si 0.896 3.104 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.397 4.397 23 S 0.359 5.641 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.155 0.845 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.078 0.922 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.551 -11.325 -23.353 27.030 hybrid contribution 0.740 -0.833 -0.449 1.201 sum 8.291 -12.157 -23.802 27.983 Atomic orbital electron populations 1.21775 0.93334 1.02673 1.02835 1.20238 0.96879 0.87501 1.04236 1.27108 1.02667 1.01803 0.90829 1.66081 1.14526 1.05912 1.31504 1.20306 0.99607 0.91147 0.94327 1.20188 0.98863 0.96721 0.92499 1.21788 0.96746 0.95119 0.92613 1.60524 1.07279 1.51625 1.12478 1.22139 0.92604 0.98215 0.93478 1.21063 1.00017 0.94489 0.93875 0.92673 1.21576 0.99899 0.96755 0.99671 1.19254 0.93154 0.96226 0.93756 1.22036 1.02739 1.34141 1.04207 0.93211 1.25831 0.93994 0.98027 1.01303 1.70777 1.19547 1.31999 1.33004 0.83566 0.75448 0.75756 0.75624 1.20870 1.21530 1.21477 1.26837 1.12950 1.04267 0.95663 1.83908 1.61069 1.06011 1.13157 0.91775 0.92389 0.91286 0.89696 0.88716 0.89344 0.90232 0.94571 0.91530 0.84547 0.95851 0.91705 0.93772 0.94301 0.92662 0.97884 0.97504 0.92192 0.80517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.05 -0.33 6.52 -27.88 -0.18 -0.52 16 3 C 0.05 0.54 6.64 -13.46 -0.09 0.45 16 4 N -0.47 -5.70 10.34 -8.06 -0.08 -5.79 16 5 C 0.08 0.89 6.08 -84.23 -0.51 0.38 16 6 C -0.04 -0.47 5.97 -27.88 -0.17 -0.64 16 7 C 0.07 0.91 5.59 -3.82 -0.02 0.89 16 8 N -0.69 -10.40 5.96 -113.78 -0.68 -11.08 16 9 C 0.06 1.17 5.07 -3.82 -0.02 1.15 16 10 C -0.08 -1.60 2.48 -90.62 -0.22 -1.83 16 11 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 13 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 14 C -0.59 -17.14 8.41 -34.44 -0.29 -17.43 16 15 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 16 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 17 N -0.92 -28.77 13.65 55.43 0.76 -28.02 16 18 Si 1.07 25.86 29.90 -169.99 -5.08 20.78 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.26 -2.46 11.07 29.12 0.32 -2.14 16 23 S 0.10 0.86 23.18 -107.50 -2.49 -1.63 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.90 8.03 -51.92 -0.42 0.48 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.34 4.80 8.73 -39.29 -0.34 4.46 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 39 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 40 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 41 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 42 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -32.27 357.63 -10.18 -42.45 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.31 Total: -0.19 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.69 Total: -21.92 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.00 Total: -44.88 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.27 -10.18 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.392 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds