Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33641 * 122.74808 * 2 1 4 4 S 1.76193 * 107.92605 * 180.02562 * 3 2 1 5 5 C 1.70974 * 90.28329 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91905 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47046 * 119.99731 * 6 5 4 8 8 C 1.53005 * 109.46922 * 239.99787 * 6 5 4 9 9 N 1.46894 * 109.46796 * 359.97438 * 6 5 4 10 10 C 1.46902 * 110.99940 * 180.02562 * 9 6 5 11 11 C 1.52997 * 109.47417 * 179.97438 * 10 9 6 12 12 H 1.09004 * 109.47231 * 305.00037 * 11 10 9 13 13 C 1.53000 * 109.46934 * 64.99714 * 11 10 9 14 14 C 1.52996 * 109.47362 * 185.00063 * 11 10 9 15 15 C 1.50703 * 109.47516 * 175.00221 * 14 11 10 16 16 H 1.08007 * 119.99507 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00272 * 180.02562 * 15 14 11 18 18 N 1.31507 * 119.99942 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47149 * 59.99487 * 19 17 15 21 21 H 1.48494 * 109.47134 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46816 * 299.99932 * 19 17 15 23 23 N 1.29034 * 110.16586 * 359.97438 * 5 4 3 24 24 H 1.08994 * 109.47500 * 269.96019 * 1 2 3 25 25 H 1.09003 * 109.46951 * 29.96691 * 1 2 3 26 26 H 1.09001 * 109.46982 * 149.95998 * 1 2 3 27 27 H 1.07998 * 126.03899 * 0.07121 * 3 2 1 28 28 H 1.08993 * 109.47219 * 60.00311 * 7 6 5 29 29 H 1.09000 * 109.46683 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.47223 * 299.99693 * 7 6 5 31 31 H 1.09002 * 109.46983 * 59.99716 * 8 6 5 32 32 H 1.09000 * 109.46676 * 179.97438 * 8 6 5 33 33 H 1.09003 * 109.46857 * 299.99566 * 8 6 5 34 34 H 1.00902 * 111.00168 * 303.95385 * 9 6 5 35 35 H 1.09002 * 109.46841 * 300.00099 * 10 9 6 36 36 H 1.09000 * 109.47057 * 60.00170 * 10 9 6 37 37 H 1.08996 * 109.47602 * 300.00514 * 13 11 10 38 38 H 1.09002 * 109.47037 * 60.00650 * 13 11 10 39 39 H 1.09002 * 109.47269 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.46889 * 295.00016 * 14 11 10 41 41 H 1.09002 * 109.47181 * 55.00006 * 14 11 10 42 42 H 0.96997 * 120.00203 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 -0.0007 5 6 3.5040 -0.9817 -0.0018 6 6 4.4836 -2.1270 -0.0022 7 6 4.2668 -2.9840 1.2465 8 6 4.2671 -2.9827 -1.2520 9 7 5.8543 -1.5988 -0.0023 10 6 6.8387 -2.6892 -0.0034 11 6 8.2512 -2.1012 -0.0041 12 1 8.3595 -1.4171 -0.8457 13 6 8.4885 -1.3429 1.3034 14 6 9.2742 -3.2318 -0.1309 15 6 10.6572 -2.6463 -0.2551 16 1 10.7929 -1.5748 -0.2450 17 6 11.7492 -3.4783 -0.3826 18 7 11.5839 -4.7829 -0.3955 19 14 13.4635 -2.7525 -0.5373 20 1 13.7687 -1.9423 0.6693 21 1 14.4564 -3.8498 -0.6602 22 1 13.5282 -1.8883 -1.7431 23 7 2.2199 -1.1082 -0.0010 24 1 -0.3634 -0.0007 1.0276 25 1 -0.3633 0.8903 -0.5133 26 1 -0.3633 -0.8896 -0.5145 27 1 1.8392 2.1308 0.0011 28 1 3.2498 -3.3759 1.2462 29 1 4.9751 -3.8125 1.2459 30 1 4.4211 -2.3744 2.1368 31 1 4.4215 -2.3720 -2.1416 32 1 4.9760 -3.8107 -1.2526 33 1 3.2500 -3.3746 -1.2523 34 1 6.0024 -0.9776 -0.7835 35 1 6.7010 -3.3038 0.8862 36 1 6.7004 -3.3026 -0.8938 37 1 7.7597 -0.5375 1.3938 38 1 8.3802 -2.0271 2.1450 39 1 9.4950 -0.9244 1.3031 40 1 9.2263 -3.8661 0.7542 41 1 9.0505 -3.8265 -1.0166 42 1 12.3521 -5.3683 -0.4848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = 21.873254 kcal Electronic energy + Delta-G solvation = -20015.361236 eV Core-core repulsion = 17121.395393 eV Total energy + Delta-G solvation = -2893.965843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12846 -38.12802 -35.14561 -32.55825 -31.61033 -29.77265 -27.73768 -27.35386 -26.77146 -26.06947 -24.40599 -22.52267 -20.03801 -19.35666 -19.24351 -17.61528 -16.36142 -15.82225 -15.16007 -15.03988 -14.71813 -14.41296 -14.14315 -13.71314 -13.33766 -13.23767 -12.78649 -12.61229 -12.58249 -12.34888 -12.19461 -11.82650 -11.61498 -11.37203 -11.31284 -11.22567 -11.14170 -10.84402 -10.72643 -10.29471 -10.24510 -9.70559 -9.62402 -9.42518 -9.15955 -8.97588 -8.75050 -8.32358 -8.26460 -5.97318 -3.98419 0.66763 1.35367 1.80025 2.70203 3.34707 3.39210 3.41581 3.70809 4.40707 4.50058 4.71140 4.97803 5.01736 5.04251 5.13508 5.36277 5.38527 5.49637 5.53954 5.63351 5.70842 5.72343 5.83156 5.87041 5.90818 6.02417 6.13540 6.21438 6.25166 6.43727 6.53673 6.67164 6.98429 7.14844 7.17041 7.27009 7.46175 7.68972 7.71856 7.84920 8.02707 8.46593 9.07693 9.64968 11.14193 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.037488 B = 0.003278 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.728055 B = 8538.521670 C = 8957.537536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.065 3.935 3 C -0.288 4.288 4 S 0.161 5.839 5 C 0.070 3.930 6 C 0.186 3.814 7 C -0.129 4.129 8 C -0.172 4.172 9 N -0.679 5.679 10 C 0.062 3.938 11 C -0.082 4.082 12 H 0.053 0.947 13 C -0.123 4.123 14 C 0.028 3.972 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 N -0.476 5.476 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.172 0.828 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.337 0.663 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.494 9.222 0.595 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.427 4.427 4 S 0.418 5.582 5 C -0.208 4.208 6 C 0.091 3.909 7 C -0.188 4.188 8 C -0.232 4.232 9 N -0.311 5.311 10 C -0.066 4.066 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.181 4.181 14 C -0.009 4.009 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 N -0.191 5.191 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.189 0.811 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.624 9.191 1.275 21.707 hybrid contribution 0.010 0.093 -1.038 1.042 sum -19.614 9.284 0.238 21.701 Atomic orbital electron populations 1.20323 0.87471 1.03070 1.02736 1.20247 0.98054 0.86614 1.01835 1.26935 0.96700 1.03780 1.15298 1.84237 1.05197 1.02286 1.66483 1.27033 0.93819 0.98115 1.01850 1.19343 0.86127 0.88537 0.96891 1.21821 1.02128 0.99139 0.95733 1.22481 1.03344 1.00655 0.96746 1.60752 1.00426 1.20284 1.49633 1.22288 0.91676 0.91998 1.00624 1.21213 0.92174 0.99072 0.97658 0.92806 1.21596 1.00577 0.99078 0.96809 1.19107 0.92357 0.92489 0.96953 1.21195 0.91607 0.92864 1.49480 0.92624 1.25010 0.99088 0.94832 0.95568 1.69947 1.30507 1.02405 1.50823 0.86698 0.84308 0.78611 0.78624 1.20269 1.21391 1.20327 1.65999 1.04396 1.31565 1.17148 0.90849 0.90979 0.90751 0.81068 0.91658 0.91103 0.91822 0.92698 0.90726 0.91274 0.84412 0.90699 0.94778 0.93952 0.94117 0.92755 0.96520 0.96913 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.31 36.01 0.37 -0.24 16 2 C 0.07 0.74 6.74 -84.23 -0.57 0.17 16 3 C -0.29 -2.97 11.13 29.12 0.32 -2.65 16 4 S 0.16 1.85 21.94 -107.50 -2.36 -0.51 16 5 C 0.07 0.91 5.82 -13.45 -0.08 0.83 16 6 C 0.19 2.40 0.93 -132.75 -0.12 2.27 16 7 C -0.13 -1.63 8.21 37.16 0.31 -1.33 16 8 C -0.17 -2.12 8.21 37.16 0.30 -1.81 16 9 N -0.68 -9.47 5.02 -101.14 -0.51 -9.97 16 10 C 0.06 1.01 4.29 -3.82 -0.02 0.99 16 11 C -0.08 -1.62 2.48 -90.62 -0.22 -1.84 16 12 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.20 8.41 -34.44 -0.29 -14.49 16 16 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.48 -6.29 10.51 -8.06 -0.08 -6.38 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.34 4.57 8.15 -39.29 -0.32 4.25 16 35 H 0.07 1.23 6.31 -51.93 -0.33 0.91 16 36 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 37 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -29.97 348.16 -8.86 -38.82 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.98 Total: 0.30 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 0.11 Total: -18.02 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.14 Total: -42.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.36 Total: -0.51 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.97 -8.86 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.696 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds