Wall clock time and date at job start Tue Mar 31 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33641 * 122.74547 * 2 1 4 4 S 1.76201 * 107.91947 * 179.75577 * 3 2 1 5 5 C 1.70975 * 90.28334 * 0.28488 * 4 3 2 6 6 C 1.50706 * 124.91415 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47238 * 239.69530 * 6 5 4 8 8 C 1.52999 * 109.46573 * 119.69556 * 6 5 4 9 9 N 1.46894 * 109.47162 * 359.70106 * 6 5 4 10 10 C 1.46897 * 111.00175 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47560 * 179.97438 * 10 9 6 12 12 H 1.09009 * 109.46921 * 54.99687 * 11 10 9 13 13 C 1.53002 * 109.47068 * 294.99894 * 11 10 9 14 14 C 1.53000 * 109.47270 * 174.99795 * 11 10 9 15 15 C 1.50705 * 109.46698 * 184.99903 * 14 11 10 16 16 H 1.07993 * 120.00214 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99705 * 179.97438 * 15 14 11 18 18 N 1.31517 * 120.00331 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99855 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47573 * 90.00017 * 19 17 15 21 21 H 1.48503 * 109.46924 * 209.99906 * 19 17 15 22 22 H 1.48500 * 109.47107 * 329.99727 * 19 17 15 23 23 N 1.29021 * 110.16983 * 359.70824 * 5 4 3 24 24 H 1.09002 * 109.47361 * 270.02343 * 1 2 3 25 25 H 1.09001 * 109.47581 * 30.02659 * 1 2 3 26 26 H 1.09002 * 109.47186 * 150.02506 * 1 2 3 27 27 H 1.07991 * 126.03966 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46832 * 60.00314 * 7 6 5 30 30 H 1.09004 * 109.47261 * 300.00295 * 7 6 5 31 31 H 1.09002 * 109.46716 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47486 * 299.99934 * 8 6 5 33 33 H 1.09001 * 109.47362 * 60.00657 * 8 6 5 34 34 H 1.00906 * 111.00073 * 303.95113 * 9 6 5 35 35 H 1.09003 * 109.47128 * 299.99488 * 10 9 6 36 36 H 1.09004 * 109.47227 * 59.99448 * 10 9 6 37 37 H 1.08993 * 109.46983 * 299.99992 * 13 11 10 38 38 H 1.08999 * 109.47052 * 59.99901 * 13 11 10 39 39 H 1.08993 * 109.47095 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.46966 * 304.99573 * 14 11 10 41 41 H 1.08998 * 109.46862 * 65.00042 * 14 11 10 42 42 H 0.96994 * 119.99840 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0071 5 6 3.5039 -0.9818 0.0009 6 6 4.4836 -2.1270 0.0023 7 6 4.2675 -2.9845 -1.2463 8 6 4.2664 -2.9823 1.2522 9 7 5.8543 -1.5989 0.0025 10 6 6.8386 -2.6893 0.0044 11 6 8.2511 -2.1013 0.0039 12 1 8.3598 -1.4162 0.8448 13 6 8.4881 -1.3445 -1.3045 14 6 9.2742 -3.2318 0.1317 15 6 10.6573 -2.6461 0.2547 16 1 10.7929 -1.5747 0.2433 17 6 11.7493 -3.4779 0.3828 18 7 12.9564 -2.9669 0.4896 19 14 11.5145 -5.3310 0.4031 20 1 11.5906 -5.8550 -0.9842 21 1 12.5800 -5.9560 1.2274 22 1 10.1862 -5.6554 0.9826 23 7 2.2199 -1.1083 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.8391 2.1308 -0.0004 28 1 4.9757 -3.8130 -1.2451 29 1 4.4222 -2.3751 -2.1367 30 1 3.2503 -3.3764 -1.2464 31 1 4.9752 -3.8103 1.2534 32 1 4.4203 -2.3714 2.1417 33 1 3.2493 -3.3743 1.2521 34 1 6.0029 -0.9785 -0.7794 35 1 6.7002 -3.3022 0.8951 36 1 6.7012 -3.3044 -0.8849 37 1 8.3794 -2.0296 -2.1452 38 1 7.7593 -0.5392 -1.3955 39 1 9.4942 -0.9253 -1.3047 40 1 9.0509 -3.8254 1.0181 41 1 9.2259 -3.8671 -0.7527 42 1 13.7246 -3.5522 0.5794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:04 Heat of formation + Delta-G solvation = 25.837710 kcal Electronic energy + Delta-G solvation = -20075.286070 eV Core-core repulsion = 17181.492139 eV Total energy + Delta-G solvation = -2893.793931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17293 -38.25368 -35.30436 -32.54673 -31.67444 -29.91994 -27.77113 -27.42678 -27.34618 -26.25738 -24.49560 -22.21029 -20.05327 -19.38948 -19.13217 -17.75146 -16.85101 -15.99102 -15.20400 -15.11259 -14.92837 -14.14326 -14.04372 -13.81797 -13.40357 -13.19770 -13.08642 -12.83940 -12.68429 -12.42824 -12.31905 -11.95768 -11.70172 -11.65836 -11.45158 -11.32980 -11.27930 -11.03491 -10.71312 -10.37749 -9.82768 -9.73384 -9.66724 -9.49361 -9.45520 -9.06364 -8.78541 -8.51408 -8.36910 -6.01555 -3.98562 0.63327 1.31984 1.76766 2.66691 3.31547 3.39434 3.42540 3.65281 4.35104 4.47127 4.66524 4.93516 4.94368 4.99874 5.10422 5.31915 5.33885 5.45297 5.47459 5.56699 5.62617 5.65050 5.67876 5.80328 5.83965 5.90276 5.96887 6.08147 6.18266 6.22814 6.34949 6.44994 6.73461 6.94354 7.03572 7.11936 7.30853 7.35348 7.50143 7.67694 7.82822 8.57620 9.04261 9.61310 11.11885 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036152 B = 0.003467 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.323245 B = 8074.409782 C = 8531.411987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.065 3.935 3 C -0.286 4.286 4 S 0.162 5.838 5 C 0.068 3.932 6 C 0.186 3.814 7 C -0.171 4.171 8 C -0.130 4.130 9 N -0.681 5.681 10 C 0.060 3.940 11 C -0.075 4.075 12 H 0.073 0.927 13 C -0.137 4.137 14 C -0.008 4.008 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.266 1.266 23 N -0.475 5.475 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.173 0.827 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.340 0.660 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.015 0.985 41 H 0.010 0.990 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.790 5.223 -2.265 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.426 4.426 4 S 0.419 5.581 5 C -0.210 4.210 6 C 0.091 3.909 7 C -0.232 4.232 8 C -0.189 4.189 9 N -0.314 5.314 10 C -0.068 4.068 11 C -0.094 4.094 12 H 0.091 0.909 13 C -0.194 4.194 14 C -0.046 4.046 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.190 1.190 23 N -0.190 5.190 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.190 0.810 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.832 5.318 -1.552 23.494 hybrid contribution -0.940 -1.185 -0.923 1.772 sum -23.771 4.132 -2.474 24.254 Atomic orbital electron populations 1.20325 0.87436 1.03082 1.02758 1.20250 0.98064 0.86595 1.01881 1.26948 0.96667 1.03820 1.15132 1.84273 1.05215 1.02181 1.66408 1.26995 0.93832 0.98130 1.02075 1.19340 0.86087 0.88610 0.96897 1.22474 1.03351 1.00553 0.96801 1.21833 1.02137 0.99141 0.95791 1.60742 1.00423 1.20253 1.50006 1.22299 0.91811 0.92133 1.00578 1.21044 0.91455 0.98753 0.98170 0.90897 1.21762 1.01878 0.98707 0.97062 1.19594 0.94917 0.94002 0.96049 1.21125 0.89102 0.95259 1.49572 0.90808 1.25030 0.95202 0.98559 0.94797 1.69913 0.98317 1.35256 1.50961 0.86810 0.78079 0.86355 0.78209 1.20455 1.21511 1.19034 1.65993 1.04365 1.31598 1.17085 0.90828 0.90950 0.90761 0.81005 0.90879 0.92668 0.91198 0.91185 0.91712 0.91584 0.83991 0.90649 0.94844 0.94007 0.94822 0.91226 0.96632 0.97220 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.06 0.72 6.74 -84.22 -0.57 0.15 16 3 C -0.29 -2.91 11.13 29.12 0.32 -2.58 16 4 S 0.16 1.84 21.94 -107.50 -2.36 -0.52 16 5 C 0.07 0.86 5.82 -13.46 -0.08 0.79 16 6 C 0.19 2.32 0.93 -132.76 -0.12 2.19 16 7 C -0.17 -1.99 8.21 37.16 0.30 -1.69 16 8 C -0.13 -1.58 8.21 37.16 0.31 -1.28 16 9 N -0.68 -9.27 5.56 -101.14 -0.56 -9.83 16 10 C 0.06 0.92 4.36 -3.83 -0.02 0.90 16 11 C -0.08 -1.42 2.54 -90.62 -0.23 -1.65 16 12 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 13 C -0.14 -2.42 8.77 37.16 0.33 -2.09 16 14 C -0.01 -0.18 3.52 -27.88 -0.10 -0.28 16 15 C -0.51 -14.25 8.96 -34.44 -0.31 -14.56 16 16 H 0.07 2.21 7.30 -52.49 -0.38 1.82 16 17 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 19 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 N -0.48 -6.14 10.51 -8.05 -0.08 -6.23 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.34 4.49 6.41 -39.29 -0.25 4.24 16 35 H 0.08 1.17 6.30 -51.93 -0.33 0.84 16 36 H 0.03 0.50 6.30 -51.93 -0.33 0.17 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 39 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -30.47 342.31 -8.46 -38.92 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.82 Total: 1.13 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 0.11 Total: -18.55 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.13 Total: -43.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.36 Total: -0.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.47 -8.46 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.762 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds