Wall clock time and date at job start Tue Mar 31 2020 06:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29028 * 124.91243 * 2 1 4 4 C 1.31784 * 117.12097 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.74727 * 180.02562 * 4 3 2 6 6 C 1.33631 * 114.50183 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.03974 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46735 * 90.00242 * 7 6 4 9 9 N 1.46901 * 109.46769 * 180.02562 * 8 7 6 10 10 C 1.46906 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46978 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47454 * 304.99901 * 11 10 9 13 13 C 1.52997 * 109.47525 * 65.00259 * 11 10 9 14 14 C 1.53001 * 109.47271 * 185.00310 * 11 10 9 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 11 10 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99833 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47546 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47194 * 120.00120 * 19 17 15 22 22 H 1.48507 * 109.47404 * 239.99970 * 19 17 15 23 23 S 1.70974 * 124.91783 * 180.31860 * 2 1 3 24 24 H 1.09001 * 109.47548 * 89.97134 * 1 2 3 25 25 H 1.09007 * 109.47186 * 209.96867 * 1 2 3 26 26 H 1.09001 * 109.47222 * 329.97156 * 1 2 3 27 27 H 1.08998 * 109.46651 * 270.00097 * 5 4 3 28 28 H 1.08999 * 109.46904 * 30.00315 * 5 4 3 29 29 H 1.09004 * 109.46951 * 149.99965 * 5 4 3 30 30 H 1.09001 * 109.46797 * 330.00590 * 7 6 4 31 31 H 1.08992 * 109.47518 * 210.00587 * 7 6 4 32 32 H 1.09002 * 109.47398 * 300.00410 * 8 7 6 33 33 H 1.09001 * 109.47194 * 60.00591 * 8 7 6 34 34 H 1.00898 * 110.99877 * 56.04956 * 9 8 7 35 35 H 1.08995 * 109.47087 * 299.99901 * 10 9 8 36 36 H 1.09002 * 109.46903 * 59.99922 * 10 9 8 37 37 H 1.09001 * 109.46810 * 299.99855 * 13 11 10 38 38 H 1.08992 * 109.47526 * 59.99414 * 13 11 10 39 39 H 1.09002 * 109.47437 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.46867 * 294.99797 * 14 11 10 41 41 H 1.08998 * 109.47402 * 54.99404 * 14 11 10 42 42 H 0.97007 * 119.99801 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5307 2.0247 0.0000 6 6 3.9354 -0.4005 -0.0004 7 6 5.3575 -0.8993 -0.0015 8 6 5.8399 -1.0677 1.4407 9 7 7.2263 -1.5533 1.4396 10 6 7.7239 -1.7278 2.8108 11 6 9.1675 -2.2328 2.7689 12 1 9.2173 -3.1419 2.1696 13 6 10.0648 -1.1615 2.1459 14 6 9.6443 -2.5331 4.1914 15 6 11.0204 -3.1454 4.1413 16 1 11.5062 -3.3048 3.1900 17 6 11.6592 -3.5021 5.3100 18 7 11.0678 -3.3075 6.4684 19 14 13.3646 -4.2616 5.2478 20 1 13.8058 -4.3728 3.8342 21 1 14.3166 -3.4027 5.9969 22 1 13.3275 -5.6128 5.8630 23 16 2.4857 -1.4019 -0.0078 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8903 0.5134 26 1 -0.3634 0.8897 0.5143 27 1 4.7664 2.3015 -1.0276 28 1 4.0906 2.8789 0.5146 29 1 5.4433 1.7220 0.5133 30 1 5.9944 -0.1798 -0.5160 31 1 5.4054 -1.8594 -0.5151 32 1 5.7919 -0.1075 1.9543 33 1 5.2029 -1.7872 1.9552 34 1 7.8254 -0.9355 0.9130 35 1 7.6887 -0.7725 3.3344 36 1 7.1002 -2.4523 3.3343 37 1 9.7252 -0.9476 1.1325 38 1 10.0152 -0.2525 2.7452 39 1 11.0932 -1.5215 2.1157 40 1 9.6792 -1.6075 4.7659 41 1 8.9537 -3.2298 4.6666 42 1 11.5170 -3.5588 7.2906 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:09 Heat of formation + Delta-G solvation = 8.993193 kcal Electronic energy + Delta-G solvation = -19124.141500 eV Core-core repulsion = 16229.617135 eV Total energy + Delta-G solvation = -2894.524365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18637 -37.27092 -35.07979 -33.40290 -32.10410 -30.52449 -29.40020 -27.09754 -26.44765 -24.79709 -23.05792 -22.55248 -21.84445 -19.17027 -18.76230 -18.15219 -16.46894 -15.82843 -15.53363 -15.19320 -14.64878 -14.33483 -14.11740 -13.81474 -13.60016 -13.54471 -13.18905 -12.76142 -12.66464 -12.48193 -12.30121 -12.16159 -11.98469 -11.67290 -11.61775 -11.35737 -11.00195 -10.87784 -10.72487 -10.32890 -10.21074 -9.83040 -9.72149 -9.43967 -9.15756 -8.96020 -8.73418 -8.33051 -8.19512 -5.97425 -3.98475 0.47889 1.12012 1.54190 2.54541 3.32299 3.39921 3.43919 3.82482 4.26682 4.49046 4.68590 4.79229 4.93843 5.02198 5.07255 5.08656 5.19644 5.37040 5.38484 5.40957 5.51231 5.56384 5.66608 5.75524 5.76615 5.89333 5.93541 6.05039 6.12788 6.25573 6.45649 6.55150 6.92301 7.10362 7.16738 7.32458 7.54009 7.61411 7.70545 7.86089 8.02951 8.46703 9.08162 9.64935 11.14164 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038919 B = 0.002486 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.266979 B =11262.355530 C =11516.637497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.038 3.962 3 N -0.471 5.471 4 C 0.061 3.939 5 C -0.079 4.079 6 C -0.213 4.213 7 C -0.040 4.040 8 C 0.064 3.936 9 N -0.690 5.690 10 C 0.065 3.935 11 C -0.084 4.084 12 H 0.066 0.934 13 C -0.134 4.134 14 C 0.027 3.973 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 S 0.121 5.879 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.338 0.662 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.225 7.669 -14.851 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.240 4.240 3 N -0.187 5.187 4 C -0.071 4.071 5 C -0.138 4.138 6 C -0.334 4.334 7 C -0.080 4.080 8 C -0.066 4.066 9 N -0.322 5.322 10 C -0.064 4.064 11 C -0.103 4.103 12 H 0.084 0.916 13 C -0.192 4.192 14 C -0.011 4.011 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.377 5.623 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.885 6.417 -14.739 25.570 hybrid contribution 1.570 1.171 0.453 2.010 sum -18.315 7.588 -14.286 24.436 Atomic orbital electron populations 1.20422 0.85266 1.04175 1.03755 1.26908 1.01653 0.91278 1.04144 1.66128 1.04544 1.31783 1.16207 1.20168 0.90154 0.94134 1.02601 1.20369 0.95972 0.94611 1.02848 1.25666 1.00035 0.95455 1.12291 1.20035 0.87654 1.02151 0.98197 1.21915 0.91346 0.98607 0.94755 1.60564 1.01911 1.53597 1.16129 1.22143 0.97711 0.99202 0.87313 1.21223 0.90725 0.97760 1.00590 0.91603 1.21744 1.01162 0.98583 0.97664 1.19120 0.95933 0.96623 0.89377 1.21273 1.01384 1.39930 0.92415 0.92491 1.25033 0.97881 0.96093 0.95639 1.69978 1.37892 1.48435 0.97366 0.86570 0.84638 0.78946 0.78050 1.19746 1.21134 1.21081 1.84028 0.97579 1.12094 1.68646 0.89716 0.90108 0.89378 0.90708 0.90662 0.90578 0.89798 0.89584 0.95262 0.91057 0.84326 0.95766 0.91462 0.94954 0.94025 0.91823 0.96751 0.96661 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.04 0.38 7.39 -13.46 -0.10 0.28 16 3 N -0.47 -5.70 10.53 -8.06 -0.08 -5.78 16 4 C 0.06 0.70 6.74 -84.22 -0.57 0.13 16 5 C -0.08 -0.72 9.82 36.01 0.35 -0.37 16 6 C -0.21 -2.32 5.84 -35.92 -0.21 -2.53 16 7 C -0.04 -0.41 5.41 -27.88 -0.15 -0.57 16 8 C 0.06 0.79 5.67 -3.82 -0.02 0.76 16 9 N -0.69 -9.85 6.50 -113.78 -0.74 -10.59 16 10 C 0.06 1.12 5.14 -3.82 -0.02 1.10 16 11 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 12 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 13 C -0.13 -2.46 8.77 37.16 0.33 -2.14 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 16 H 0.06 1.56 7.06 -52.49 -0.37 1.18 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 S 0.12 1.18 23.18 -107.50 -2.49 -1.32 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.65 7.18 -51.93 -0.37 0.28 16 30 H 0.08 0.77 7.43 -51.93 -0.39 0.38 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.36 7.97 -51.93 -0.41 -0.05 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.34 4.44 6.98 -39.29 -0.27 4.17 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -31.29 354.86 -10.16 -41.45 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.16 Total: -1.53 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -0.75 Total: -17.96 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.09 Total: -42.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.29 -10.16 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.447 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds