Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29035 * 124.91146 * 2 1 4 4 C 1.31773 * 117.12367 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.75079 * 179.97438 * 4 3 2 6 6 C 1.33640 * 114.50192 * 359.97438 * 4 3 2 7 7 C 1.50702 * 126.04061 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47084 * 90.00359 * 7 6 4 9 9 N 1.46897 * 109.47032 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00246 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47357 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47104 * 55.00451 * 11 10 9 13 13 C 1.52998 * 109.47026 * 294.99646 * 11 10 9 14 14 C 1.53002 * 109.46886 * 174.99797 * 11 10 9 15 15 C 1.50706 * 109.47153 * 184.99546 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 S 1.70974 * 124.91938 * 180.31651 * 2 1 3 24 24 H 1.08993 * 109.47714 * 89.97904 * 1 2 3 25 25 H 1.09002 * 109.46716 * 209.97882 * 1 2 3 26 26 H 1.08998 * 109.47379 * 329.97011 * 1 2 3 27 27 H 1.08991 * 109.47013 * 269.99488 * 5 4 3 28 28 H 1.09002 * 109.46587 * 30.00049 * 5 4 3 29 29 H 1.09004 * 109.46748 * 149.99477 * 5 4 3 30 30 H 1.08999 * 109.47189 * 330.00151 * 7 6 4 31 31 H 1.09002 * 109.47077 * 210.00077 * 7 6 4 32 32 H 1.08999 * 109.47278 * 59.99846 * 8 7 6 33 33 H 1.09002 * 109.46933 * 299.99805 * 8 7 6 34 34 H 1.00907 * 110.99976 * 56.04388 * 9 8 7 35 35 H 1.09001 * 109.47205 * 59.99991 * 10 9 8 36 36 H 1.09002 * 109.47023 * 300.00245 * 10 9 8 37 37 H 1.08990 * 109.47503 * 300.00380 * 13 11 10 38 38 H 1.09001 * 109.46970 * 60.00396 * 13 11 10 39 39 H 1.09003 * 109.46843 * 179.97438 * 13 11 10 40 40 H 1.09004 * 109.47178 * 65.00336 * 14 11 10 41 41 H 1.08993 * 109.47411 * 305.00018 * 14 11 10 42 42 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8796 -0.0005 5 6 4.5306 2.0249 -0.0012 6 6 3.9354 -0.4004 -0.0004 7 6 5.3575 -0.8991 -0.0004 8 6 5.8387 -1.0679 1.4421 9 7 7.2251 -1.5535 1.4421 10 6 7.7221 -1.7271 2.8135 11 6 9.1658 -2.2321 2.7727 12 1 9.7717 -1.5522 2.1737 13 6 9.2000 -3.6292 2.1499 14 6 9.7248 -2.2941 4.1956 15 6 11.1825 -2.6733 4.1466 16 1 11.6623 -2.8517 3.1957 17 6 11.9036 -2.7924 5.3157 18 7 11.3206 -2.5700 6.4734 19 14 13.7107 -3.2617 5.2549 20 1 13.8408 -4.7394 5.3228 21 1 14.3074 -2.7699 3.9871 22 1 14.4203 -2.6488 6.4064 23 16 2.4857 -1.4019 -0.0077 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 4.7663 2.3007 -1.0289 28 1 4.0905 2.8795 0.5127 29 1 5.4433 1.7226 0.5125 30 1 5.9949 -0.1796 -0.5143 31 1 5.4058 -1.8592 -0.5142 32 1 5.2013 -1.7874 1.9560 33 1 5.7904 -0.1078 1.9559 34 1 7.8247 -0.9354 0.9161 35 1 7.0982 -2.4514 3.3371 36 1 7.6865 -0.7715 3.3366 37 1 8.5941 -4.3089 2.7489 38 1 8.8018 -3.5849 1.1362 39 1 10.2286 -3.9887 2.1205 40 1 9.1747 -3.0396 4.7699 41 1 9.6187 -1.3188 4.6705 42 1 10.3823 -2.3260 6.5050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = 4.825246 kcal Electronic energy + Delta-G solvation = -19146.772351 eV Core-core repulsion = 16252.067251 eV Total energy + Delta-G solvation = -2894.705100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21909 -37.29895 -35.20134 -33.56148 -32.18103 -30.54924 -29.42802 -26.83975 -26.31474 -24.60564 -23.07118 -22.57813 -21.99323 -19.45555 -18.89003 -18.18367 -16.69612 -15.84147 -15.56660 -15.23202 -14.46272 -14.40871 -13.99745 -13.76748 -13.66163 -13.62008 -13.26724 -13.03194 -12.69113 -12.58895 -12.25318 -12.21147 -11.80976 -11.71026 -11.60405 -11.36882 -11.02844 -10.96349 -10.67683 -10.24621 -10.09208 -9.86299 -9.81819 -9.49912 -9.41241 -8.78689 -8.45858 -8.28896 -8.25065 -6.31676 -3.99748 0.44484 1.08640 1.50736 2.51455 3.45352 3.48929 3.64481 3.79410 4.20412 4.57804 4.65452 4.75159 4.89010 4.99256 5.02703 5.06055 5.14624 5.34074 5.37686 5.44682 5.48002 5.52184 5.60308 5.63712 5.74199 5.85192 5.88444 6.03979 6.09594 6.30547 6.42907 6.58037 6.87822 7.05242 7.11191 7.22125 7.41611 7.50813 7.52681 7.61106 8.27735 8.51658 8.93538 9.71815 11.08804 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.039578 B = 0.002477 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.288834 B =11302.066258 C =11419.278129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.039 3.961 3 N -0.471 5.471 4 C 0.062 3.938 5 C -0.079 4.079 6 C -0.214 4.214 7 C -0.040 4.040 8 C 0.064 3.936 9 N -0.687 5.687 10 C 0.064 3.936 11 C -0.075 4.075 12 H 0.055 0.945 13 C -0.122 4.122 14 C 0.013 3.987 15 C -0.593 4.593 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.917 5.917 19 Si 1.070 2.930 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.285 1.285 23 S 0.120 5.880 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.007 0.993 41 H 0.003 0.997 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.180 5.199 -15.500 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.239 4.239 3 N -0.187 5.187 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.335 4.335 7 C -0.080 4.080 8 C -0.066 4.066 9 N -0.317 5.317 10 C -0.065 4.065 11 C -0.094 4.094 12 H 0.074 0.926 13 C -0.179 4.179 14 C -0.024 4.024 15 C -0.631 4.631 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.899 3.101 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.211 1.211 23 S 0.376 5.624 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.021 0.979 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.536 3.680 -14.629 24.682 hybrid contribution -0.764 1.899 -0.613 2.137 sum -20.301 5.579 -15.241 25.991 Atomic orbital electron populations 1.20424 0.85239 1.04188 1.03781 1.26917 1.01664 0.91246 1.04082 1.66128 1.04545 1.31773 1.16208 1.20172 0.90160 0.94135 1.02510 1.20371 0.95955 0.94616 1.02878 1.25661 1.00011 0.95460 1.12410 1.20025 0.87695 1.02168 0.98090 1.21914 0.91225 0.98583 0.94859 1.60514 1.01952 1.53420 1.15849 1.22163 0.97742 0.99046 0.87549 1.21060 0.91970 0.96782 0.99599 0.92647 1.21579 1.01272 0.96306 0.98793 1.19259 0.96613 0.95777 0.90774 1.22054 0.95263 1.50876 0.94941 0.93152 1.25834 1.06039 0.94851 0.92443 1.70750 1.14038 1.44261 1.26288 0.83528 0.74738 0.76523 0.75328 1.21506 1.21525 1.21098 1.84020 0.97596 1.12130 1.68680 0.89686 0.90107 0.89357 0.90672 0.90641 0.90595 0.89742 0.89597 0.91107 0.95242 0.84456 0.91590 0.95800 0.94265 0.93775 0.92614 0.97493 0.97878 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.10 16 2 C 0.04 0.39 7.39 -13.45 -0.10 0.29 16 3 N -0.47 -5.67 10.53 -8.06 -0.08 -5.75 16 4 C 0.06 0.70 6.74 -84.23 -0.57 0.13 16 5 C -0.08 -0.73 9.82 36.01 0.35 -0.37 16 6 C -0.21 -2.31 5.84 -35.92 -0.21 -2.52 16 7 C -0.04 -0.40 5.41 -27.88 -0.15 -0.55 16 8 C 0.06 0.77 5.67 -3.82 -0.02 0.75 16 9 N -0.69 -9.59 5.96 -113.78 -0.68 -10.27 16 10 C 0.06 1.09 5.07 -3.83 -0.02 1.07 16 11 C -0.08 -1.54 2.48 -90.62 -0.22 -1.76 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 14 C 0.01 0.34 3.76 -27.88 -0.10 0.23 16 15 C -0.59 -16.87 8.41 -34.44 -0.29 -17.16 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 18 N -0.92 -28.45 13.65 55.43 0.76 -27.69 16 19 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 S 0.12 1.15 23.18 -107.50 -2.49 -1.34 16 24 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.65 7.19 -51.93 -0.37 0.28 16 30 H 0.08 0.76 7.43 -51.93 -0.39 0.38 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.36 7.98 -51.93 -0.41 -0.05 16 34 H 0.34 4.36 8.73 -39.29 -0.34 4.02 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 39 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 40 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 41 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 42 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -32.10 355.82 -10.17 -42.27 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.22 Total: -1.32 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.72 Total: -21.80 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.01 Total: -43.72 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.49 Total: -1.34 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.10 -10.17 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.096 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds