Wall clock time and date at job start Tue Mar 31 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47280 * 2 1 4 4 C 1.52999 * 109.47150 * 173.76414 * 3 2 1 5 5 N 1.46898 * 109.47328 * 53.76552 * 3 2 1 6 6 C 1.46900 * 110.99957 * 60.00030 * 5 3 2 7 7 C 1.53002 * 109.47301 * 180.02562 * 6 5 3 8 8 H 1.08994 * 109.47287 * 305.00196 * 7 6 5 9 9 C 1.53002 * 109.46955 * 64.99954 * 7 6 5 10 10 C 1.52997 * 109.47279 * 185.00051 * 7 6 5 11 11 C 1.50701 * 109.47264 * 175.00130 * 10 7 6 12 12 H 1.07995 * 120.00061 * 0.02562 * 11 10 7 13 13 C 1.37876 * 120.00015 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47320 * 59.99851 * 15 13 11 17 17 H 1.48498 * 109.47484 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47057 * 300.00094 * 15 13 11 19 19 C 1.50697 * 109.47095 * 293.76432 * 3 2 1 20 20 N 1.29032 * 124.91564 * 170.14397 * 19 3 2 21 21 C 1.31777 * 117.12419 * 180.02562 * 20 19 3 22 22 C 1.33640 * 114.50147 * 0.02562 * 21 20 19 23 23 S 1.70977 * 124.91890 * 350.46678 * 19 3 2 24 24 H 1.08993 * 109.47025 * 172.89895 * 1 2 3 25 25 H 1.08998 * 109.46839 * 292.90156 * 1 2 3 26 26 H 1.09000 * 109.46673 * 52.89998 * 1 2 3 27 27 H 1.08995 * 109.46986 * 239.99306 * 2 1 3 28 28 H 1.09009 * 109.46810 * 119.99748 * 2 1 3 29 29 H 1.09005 * 109.47433 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47430 * 300.00152 * 4 3 2 31 31 H 1.08996 * 109.47040 * 60.00228 * 4 3 2 32 32 H 1.00894 * 111.00176 * 296.05046 * 5 3 2 33 33 H 1.08997 * 109.47362 * 300.00142 * 6 5 3 34 34 H 1.09000 * 109.47670 * 60.00010 * 6 5 3 35 35 H 1.08997 * 109.47384 * 299.99743 * 9 7 6 36 36 H 1.08996 * 109.47319 * 60.00379 * 9 7 6 37 37 H 1.09005 * 109.47070 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47124 * 295.00099 * 10 7 6 39 39 H 1.08994 * 109.47411 * 54.99690 * 10 7 6 40 40 H 0.97004 * 120.00460 * 180.02562 * 14 13 11 41 41 H 1.08005 * 122.74999 * 180.02562 * 21 20 19 42 42 H 1.08004 * 126.04037 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5620 1.4452 0.1567 5 7 1.4315 2.1770 1.1171 6 6 1.7737 1.5565 2.4039 7 6 1.1229 2.3472 3.5406 8 1 1.4185 3.3940 3.4707 9 6 -0.3993 2.2387 3.4310 10 6 1.5794 1.7771 4.8850 11 6 1.0374 2.6305 6.0026 12 1 0.4279 3.4929 5.7766 13 6 1.3187 2.3095 7.3137 14 7 2.0605 1.2590 7.5889 15 14 0.6463 3.3669 8.6990 16 1 -0.8377 3.3730 8.6416 17 1 1.0894 2.8137 10.0039 18 1 1.1529 4.7552 8.5528 19 6 1.6677 2.1069 -1.3003 20 7 1.7886 3.3677 -1.5466 21 6 1.4143 3.7855 -2.7390 22 6 0.9514 2.8238 -3.5432 23 16 1.0166 1.3005 -2.6602 24 1 -0.3633 -1.0197 -0.1270 25 1 -0.3633 0.3999 0.9467 26 1 -0.3633 0.6199 -0.8197 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9255 2.4729 0.1562 30 1 3.8314 0.9646 1.0972 31 1 4.0136 0.9002 -0.6722 32 1 0.4313 2.2449 1.0031 33 1 1.4086 0.5296 2.4206 34 1 2.8561 1.5592 2.5322 35 1 -0.7245 2.6449 2.4733 36 1 -0.6949 1.1919 3.5010 37 1 -0.8630 2.8024 4.2406 38 1 1.2074 0.7582 4.9927 39 1 2.6685 1.7725 4.9268 40 1 2.2581 1.0330 8.5113 41 1 1.4765 4.8205 -3.0416 42 1 0.5962 2.9573 -4.5544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:55 Heat of formation + Delta-G solvation = 28.091794 kcal Electronic energy + Delta-G solvation = -20489.784447 eV Core-core repulsion = 17596.088260 eV Total energy + Delta-G solvation = -2893.696187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06491 -38.33461 -35.28191 -32.49372 -31.10141 -30.42442 -29.17345 -26.75485 -26.13876 -24.94585 -23.67522 -22.59106 -20.78516 -19.38203 -18.95757 -17.71051 -16.46705 -16.02469 -15.44415 -15.08543 -14.79174 -14.46077 -14.30163 -13.71100 -13.61149 -13.26382 -13.05191 -12.62439 -12.35420 -12.12722 -11.99124 -11.72059 -11.51567 -11.39436 -11.27465 -11.14582 -11.02349 -10.84707 -10.65315 -10.32037 -10.12521 -9.67500 -9.60376 -9.43843 -9.11862 -8.97996 -8.89095 -8.29718 -8.08602 -5.94819 -3.95654 0.61078 1.24917 1.66410 2.81149 3.36829 3.41000 3.43874 3.97013 4.35846 4.51778 4.66912 4.89143 4.95774 5.04681 5.12216 5.38233 5.41047 5.45110 5.48332 5.69335 5.73218 5.76687 5.83625 5.90571 5.95190 6.08504 6.09289 6.10145 6.29826 6.34010 6.49522 6.61119 6.97743 7.13813 7.20837 7.36255 7.64661 7.73102 7.76743 7.89540 8.05641 8.49867 9.10475 9.67592 11.16659 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032934 B = 0.003524 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.984907 B = 7942.610721 C = 8113.869129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C 0.191 3.809 4 C -0.135 4.135 5 N -0.662 5.662 6 C 0.060 3.940 7 C -0.083 4.083 8 H 0.066 0.934 9 C -0.134 4.134 10 C 0.030 3.970 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.072 3.928 20 N -0.448 5.448 21 C 0.039 3.961 22 C -0.276 4.276 23 S 0.113 5.887 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.340 0.660 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.173 0.827 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 -2.292 -22.637 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.202 4.202 3 C 0.096 3.904 4 C -0.193 4.193 5 N -0.295 5.295 6 C -0.068 4.068 7 C -0.102 4.102 8 H 0.084 0.916 9 C -0.191 4.191 10 C -0.008 4.008 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.207 4.207 20 N -0.161 5.161 21 C -0.113 4.113 22 C -0.415 4.415 23 S 0.368 5.632 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.190 0.810 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.252 -2.581 -22.289 22.473 hybrid contribution -0.921 0.711 0.402 1.231 sum -2.173 -1.870 -21.887 22.074 Atomic orbital electron populations 1.22024 0.95245 1.02532 1.02604 1.22405 0.97049 0.97206 1.03590 1.19458 0.96318 0.89351 0.85275 1.21874 0.91819 1.03593 1.02051 1.60667 1.16228 1.52236 1.00389 1.22286 1.00983 0.95891 0.87633 1.21217 0.94164 0.99779 0.95064 0.91562 1.21749 0.97131 1.00603 0.99648 1.19090 0.96339 0.95988 0.89356 1.21208 1.31440 1.11535 0.90919 0.92642 1.25005 0.95358 0.95252 0.98860 1.69951 1.38259 1.26419 1.19097 0.86704 0.79335 0.80786 0.81445 1.20337 1.21405 1.20269 1.27188 1.01357 0.92191 0.99970 1.66215 1.17675 1.13408 1.18781 1.21918 0.99627 1.01304 0.88427 1.27180 1.12250 0.96013 1.06047 1.84033 1.59036 1.12421 1.07705 0.91834 0.91722 0.92352 0.91364 0.89464 0.90771 0.90904 0.92656 0.83930 0.95247 0.90884 0.95120 0.94032 0.91873 0.96792 0.96654 0.93078 0.81017 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 8.83 37.16 0.33 -1.45 16 2 C -0.16 -1.79 3.99 -26.73 -0.11 -1.90 16 3 C 0.19 2.45 0.69 -132.76 -0.09 2.36 16 4 C -0.13 -1.69 8.22 37.16 0.31 -1.38 16 5 N -0.66 -10.00 5.89 -101.14 -0.60 -10.60 16 6 C 0.06 1.02 4.15 -3.82 -0.02 1.00 16 7 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 8 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 9 C -0.13 -2.51 8.77 37.16 0.33 -2.18 16 10 C 0.03 0.76 4.45 -27.88 -0.12 0.63 16 11 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 12 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.07 0.91 5.51 -13.46 -0.07 0.84 16 20 N -0.45 -6.23 10.54 -11.86 -0.13 -6.36 16 21 C 0.04 0.43 11.35 -19.19 -0.22 0.21 16 22 C -0.28 -2.56 11.37 29.12 0.33 -2.23 16 23 S 0.11 1.12 19.43 -107.50 -2.09 -0.97 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.78 6.63 -51.93 -0.34 0.43 16 26 H 0.06 0.61 5.53 -51.89 -0.29 0.32 16 27 H 0.07 0.66 7.40 -51.93 -0.38 0.27 16 28 H 0.09 1.01 6.75 -51.92 -0.35 0.66 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.34 5.11 5.34 -39.30 -0.21 4.90 16 33 H 0.03 0.48 6.11 -51.93 -0.32 0.16 16 34 H 0.07 1.27 6.30 -51.93 -0.33 0.94 16 35 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.17 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -30.62 336.33 -8.55 -39.18 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.57 Total: 2.33 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 0.04 Total: -19.20 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.02 Total: -43.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.09 Total: -0.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.62 -8.55 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.268 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds