Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47280 * 2 1 4 4 C 1.52999 * 109.47150 * 173.76414 * 3 2 1 5 5 N 1.46898 * 109.47328 * 53.76552 * 3 2 1 6 6 C 1.46900 * 110.99957 * 60.00030 * 5 3 2 7 7 C 1.53002 * 109.47301 * 180.02562 * 6 5 3 8 8 H 1.08994 * 109.47287 * 305.00196 * 7 6 5 9 9 C 1.53002 * 109.46955 * 64.99954 * 7 6 5 10 10 C 1.52997 * 109.47279 * 185.00051 * 7 6 5 11 11 C 1.50701 * 109.47264 * 175.00130 * 10 7 6 12 12 H 1.07995 * 120.00061 * 0.02562 * 11 10 7 13 13 C 1.37876 * 120.00015 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47320 * 59.99851 * 15 13 11 17 17 H 1.48498 * 109.47484 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47057 * 300.00094 * 15 13 11 19 19 C 1.50697 * 109.47095 * 293.76432 * 3 2 1 20 20 N 1.29032 * 124.91564 * 170.14397 * 19 3 2 21 21 C 1.31777 * 117.12419 * 180.02562 * 20 19 3 22 22 C 1.33640 * 114.50147 * 0.02562 * 21 20 19 23 23 S 1.70977 * 124.91890 * 350.46678 * 19 3 2 24 24 H 1.08993 * 109.47025 * 172.89895 * 1 2 3 25 25 H 1.08998 * 109.46839 * 292.90156 * 1 2 3 26 26 H 1.09000 * 109.46673 * 52.89998 * 1 2 3 27 27 H 1.08995 * 109.46986 * 239.99306 * 2 1 3 28 28 H 1.09009 * 109.46810 * 119.99748 * 2 1 3 29 29 H 1.09005 * 109.47433 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47430 * 300.00152 * 4 3 2 31 31 H 1.08996 * 109.47040 * 60.00228 * 4 3 2 32 32 H 1.00894 * 111.00176 * 296.05046 * 5 3 2 33 33 H 1.08997 * 109.47362 * 300.00142 * 6 5 3 34 34 H 1.09000 * 109.47670 * 60.00010 * 6 5 3 35 35 H 1.08997 * 109.47384 * 299.99743 * 9 7 6 36 36 H 1.08996 * 109.47319 * 60.00379 * 9 7 6 37 37 H 1.09005 * 109.47070 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47124 * 295.00099 * 10 7 6 39 39 H 1.08994 * 109.47411 * 54.99690 * 10 7 6 40 40 H 0.97004 * 120.00460 * 180.02562 * 14 13 11 41 41 H 1.08005 * 122.74999 * 180.02562 * 21 20 19 42 42 H 1.08004 * 126.04037 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5620 1.4452 0.1567 5 7 1.4315 2.1770 1.1171 6 6 1.7737 1.5565 2.4039 7 6 1.1229 2.3472 3.5406 8 1 1.4185 3.3940 3.4707 9 6 -0.3993 2.2387 3.4310 10 6 1.5794 1.7771 4.8850 11 6 1.0374 2.6305 6.0026 12 1 0.4279 3.4929 5.7766 13 6 1.3187 2.3095 7.3137 14 7 2.0605 1.2590 7.5889 15 14 0.6463 3.3669 8.6990 16 1 -0.8377 3.3730 8.6416 17 1 1.0894 2.8137 10.0039 18 1 1.1529 4.7552 8.5528 19 6 1.6677 2.1069 -1.3003 20 7 1.7886 3.3677 -1.5466 21 6 1.4143 3.7855 -2.7390 22 6 0.9514 2.8238 -3.5432 23 16 1.0166 1.3005 -2.6602 24 1 -0.3633 -1.0197 -0.1270 25 1 -0.3633 0.3999 0.9467 26 1 -0.3633 0.6199 -0.8197 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9255 2.4729 0.1562 30 1 3.8314 0.9646 1.0972 31 1 4.0136 0.9002 -0.6722 32 1 0.4313 2.2449 1.0031 33 1 1.4086 0.5296 2.4206 34 1 2.8561 1.5592 2.5322 35 1 -0.7245 2.6449 2.4733 36 1 -0.6949 1.1919 3.5010 37 1 -0.8630 2.8024 4.2406 38 1 1.2074 0.7582 4.9927 39 1 2.6685 1.7725 4.9268 40 1 2.2581 1.0330 8.5113 41 1 1.4765 4.8205 -3.0416 42 1 0.5962 2.9573 -4.5544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = 9.018928 kcal Electronic energy + Delta-G solvation = -20490.611508 eV Core-core repulsion = 17596.088260 eV Total energy + Delta-G solvation = -2894.523249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98589 -39.40457 -36.89739 -34.47652 -32.20689 -31.53239 -30.18635 -28.65654 -27.33770 -26.21469 -24.64500 -24.29036 -21.79573 -20.57369 -20.28574 -18.65307 -18.46588 -17.16526 -16.68481 -16.41669 -15.97583 -15.70253 -15.37957 -15.15990 -14.65497 -14.43588 -14.16514 -14.04649 -13.86986 -13.46982 -13.33591 -13.10319 -12.87670 -12.72802 -12.52180 -12.40839 -12.24888 -12.18592 -12.06862 -11.96617 -11.78225 -11.41556 -11.05164 -10.96736 -10.50791 -10.42112 -10.24103 -9.72432 -9.27681 -8.15583 -6.24178 -0.20039 0.45974 0.87035 1.40725 1.43327 1.50915 1.96984 2.43387 3.11472 3.17784 3.24540 3.71691 3.96484 4.13709 4.19019 4.29860 4.31922 4.43711 4.46584 4.53240 4.61887 4.64145 4.70236 4.78136 4.84688 4.93350 4.99270 5.06446 5.10230 5.22441 5.23458 5.32488 5.33448 5.40610 5.49891 5.58468 5.82845 5.92094 6.10173 6.34225 6.46191 6.91257 6.94684 7.43688 8.96127 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032934 B = 0.003524 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.984907 B = 7942.610721 C = 8113.869129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.158 4.158 3 C 0.190 3.810 4 C -0.133 4.133 5 N -0.669 5.669 6 C 0.077 3.923 7 C -0.075 4.075 8 H 0.049 0.951 9 C -0.124 4.124 10 C 0.037 3.963 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.958 3.042 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.043 3.957 20 N -0.483 5.483 21 C 0.014 3.986 22 C -0.261 4.261 23 S 0.156 5.844 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.341 0.659 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.043 0.957 38 H -0.007 1.007 39 H -0.013 1.013 40 H 0.262 0.738 41 H 0.188 0.812 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 -2.320 -24.562 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.198 4.198 3 C 0.095 3.905 4 C -0.192 4.192 5 N -0.302 5.302 6 C -0.052 4.052 7 C -0.094 4.094 8 H 0.068 0.932 9 C -0.182 4.182 10 C -0.001 4.001 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.783 3.217 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.235 4.235 20 N -0.198 5.198 21 C -0.137 4.137 22 C -0.400 4.400 23 S 0.411 5.589 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.012 0.988 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.205 0.795 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.516 -2.607 -24.229 24.498 hybrid contribution -0.515 0.712 0.881 1.244 sum -3.031 -1.895 -23.348 23.620 Atomic orbital electron populations 1.22013 0.94784 1.03489 1.01921 1.22356 0.97400 0.95897 1.04158 1.19485 0.95981 0.90223 0.84804 1.21847 0.92244 1.02494 1.02568 1.60552 1.16391 1.52955 1.00266 1.21939 0.99975 0.95599 0.87679 1.21003 0.95739 0.98818 0.93821 0.93207 1.21631 0.95368 1.00774 1.00410 1.18959 0.94348 0.94854 0.91920 1.21614 1.31389 1.11843 0.91998 0.92407 1.25900 0.95615 0.96546 1.01661 1.70083 1.39512 1.28107 1.19751 0.85608 0.79054 0.79016 0.78020 1.19210 1.20924 1.19535 1.27024 1.03108 0.92537 1.00859 1.66192 1.18530 1.14492 1.20549 1.22215 1.00707 1.02637 0.88116 1.27617 1.10116 0.95232 1.07000 1.83800 1.57516 1.11837 1.05773 0.90270 0.93223 0.91967 0.89490 0.90170 0.92790 0.91503 0.90698 0.83828 0.94566 0.91815 0.92327 0.93593 0.93762 0.98838 0.99467 0.92946 0.79473 0.77749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.83 71.98 0.64 -2.56 16 2 C -0.16 -3.25 3.99 30.59 0.12 -3.12 16 3 C 0.19 4.71 0.69 2.78 0.00 4.72 16 4 C -0.13 -3.32 8.22 71.98 0.59 -2.73 16 5 N -0.67 -20.10 5.89 -473.91 -2.79 -22.89 16 6 C 0.08 2.64 4.15 86.30 0.36 3.00 16 7 C -0.07 -3.12 2.55 -10.79 -0.03 -3.15 16 8 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 9 C -0.12 -4.64 8.77 71.98 0.63 -4.00 16 10 C 0.04 1.94 4.45 29.85 0.13 2.08 16 11 C -0.53 -30.39 8.41 25.60 0.22 -30.18 16 12 H 0.06 3.21 7.05 -2.91 -0.02 3.19 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 15 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.04 1.02 5.51 88.52 0.49 1.51 16 20 N -0.48 -13.01 10.54 -191.44 -2.02 -15.03 16 21 C 0.01 0.28 11.35 83.66 0.95 1.23 16 22 C -0.26 -4.03 11.37 66.78 0.76 -3.27 16 23 S 0.16 2.65 19.43 -56.49 -1.10 1.55 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.12 6.63 -2.39 -0.02 1.10 16 26 H 0.06 1.15 5.53 -2.41 -0.01 1.14 16 27 H 0.09 1.45 7.40 -2.39 -0.02 1.44 16 28 H 0.08 1.77 6.75 -2.38 -0.02 1.75 16 29 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 1.71 6.40 -2.39 -0.02 1.70 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.34 9.99 5.34 -89.70 -0.48 9.52 16 33 H 0.04 1.19 6.11 -2.39 -0.01 1.18 16 34 H 0.06 2.30 6.30 -2.39 -0.02 2.28 16 35 H 0.06 1.84 6.68 -2.39 -0.02 1.82 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.79 6.95 -2.38 -0.02 1.78 16 38 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -67.04 336.33 2.25 -64.79 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.53 Total: 17.59 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 5.32 Total: -36.02 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -4.52 Total: -94.95 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.10 Total: 1.55 kcal Total: -67.04 2.25 -64.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.805 kcal (2) G-P(sol) polarization free energy of solvation -67.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds