Wall clock time and date at job start Tue Mar 31 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 C 1.53007 * 109.47174 * 185.00421 * 3 2 1 5 5 N 1.46905 * 109.46905 * 304.99808 * 3 2 1 6 6 C 1.46899 * 111.00133 * 300.00040 * 5 3 2 7 7 C 1.53002 * 109.47007 * 179.97438 * 6 5 3 8 8 H 1.08997 * 109.46925 * 54.99950 * 7 6 5 9 9 C 1.53004 * 109.47249 * 295.00223 * 7 6 5 10 10 C 1.52998 * 109.47134 * 175.00081 * 7 6 5 11 11 C 1.50701 * 109.46835 * 184.99816 * 10 7 6 12 12 H 1.08001 * 120.00334 * 0.02562 * 11 10 7 13 13 C 1.37879 * 119.99439 * 179.97438 * 11 10 7 14 14 N 1.31509 * 120.00316 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99690 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47479 * 59.99776 * 15 13 11 17 17 H 1.48500 * 109.47235 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.47051 * 299.99997 * 15 13 11 19 19 C 1.50693 * 109.47147 * 65.00046 * 3 2 1 20 20 N 1.29027 * 124.91534 * 60.30795 * 19 3 2 21 21 C 1.31784 * 117.12400 * 180.22644 * 20 19 3 22 22 C 1.33641 * 114.49781 * 359.48088 * 21 20 19 23 23 S 1.70983 * 124.91700 * 239.99746 * 19 3 2 24 24 H 1.08997 * 109.47268 * 60.00407 * 1 2 3 25 25 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46966 * 299.99861 * 1 2 3 27 27 H 1.09005 * 109.47117 * 239.99856 * 2 1 3 28 28 H 1.09000 * 109.47518 * 120.00058 * 2 1 3 29 29 H 1.09004 * 109.46520 * 299.99783 * 4 3 2 30 30 H 1.08995 * 109.47050 * 59.99476 * 4 3 2 31 31 H 1.08994 * 109.47031 * 179.97438 * 4 3 2 32 32 H 1.00902 * 110.99901 * 176.04632 * 5 3 2 33 33 H 1.08993 * 109.47132 * 300.00155 * 6 5 3 34 34 H 1.08999 * 109.46917 * 60.00203 * 6 5 3 35 35 H 1.09005 * 109.46983 * 60.00021 * 9 7 6 36 36 H 1.09001 * 109.47520 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.46826 * 300.00263 * 9 7 6 38 38 H 1.08999 * 109.47369 * 305.00144 * 10 7 6 39 39 H 1.09001 * 109.46992 * 65.00548 * 10 7 6 40 40 H 0.97004 * 119.99745 * 180.02562 * 14 13 11 41 41 H 1.08002 * 122.75368 * 179.75456 * 21 20 19 42 42 H 1.08001 * 126.03830 * 180.26907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 -0.1258 5 7 1.4542 2.1689 -1.1346 6 6 1.8224 1.5391 -2.4096 7 6 1.1948 2.3216 -3.5650 8 1 1.4889 3.3689 -3.4965 9 6 -0.3294 2.2137 -3.4855 10 6 1.6784 1.7419 -4.8957 11 6 1.1591 2.5871 -6.0301 12 1 0.5459 3.4516 -5.8227 13 6 1.4679 2.2574 -7.3328 14 7 2.2150 1.2050 -7.5854 15 14 0.8248 3.3055 -8.7390 16 1 1.3284 4.6947 -8.5916 17 1 1.2941 2.7428 -10.0307 18 1 -0.6600 3.3119 -8.7128 19 6 1.6413 2.1162 1.2876 20 7 1.9970 1.7275 2.4654 21 6 1.5547 2.4299 3.4890 22 6 0.7920 3.4754 3.1555 23 16 0.6583 3.5108 1.3990 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9994 0.9053 0.7160 30 1 3.8531 0.9570 -1.0572 31 1 3.9280 2.4720 -0.1263 32 1 1.7245 3.1409 -1.1200 33 1 2.9072 1.5411 -2.5159 34 1 1.4576 0.5122 -2.4263 35 1 -0.6739 2.6268 -2.5374 36 1 -0.7765 2.7715 -4.3083 37 1 -0.6235 1.1664 -3.5538 38 1 2.7682 1.7371 -4.9153 39 1 1.3086 0.7222 -5.0036 40 1 2.4325 0.9733 -8.5019 41 1 1.7930 2.1837 4.5132 42 1 0.3378 4.1751 3.8415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:00 Heat of formation + Delta-G solvation = 24.440577 kcal Electronic energy + Delta-G solvation = -20474.309246 eV Core-core repulsion = 17580.454730 eV Total energy + Delta-G solvation = -2893.854516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06689 -38.21723 -35.20904 -32.51410 -31.23607 -30.42225 -28.86992 -26.77632 -26.17686 -24.82022 -23.48572 -22.74885 -20.68567 -19.27700 -19.16092 -17.83703 -16.34501 -15.85433 -15.23730 -15.08659 -14.67464 -14.46121 -14.32658 -13.60672 -13.42960 -13.23050 -13.17609 -12.60584 -12.36098 -12.18762 -11.91274 -11.60351 -11.43025 -11.39572 -11.13090 -10.89804 -10.84778 -10.74613 -10.69717 -10.28951 -10.23486 -9.70349 -9.61161 -9.42490 -9.15758 -8.97540 -8.92643 -8.32349 -8.24493 -5.97353 -3.98445 0.67307 1.34221 1.79766 2.77761 3.34632 3.39221 3.41529 3.78060 4.42636 4.50229 4.80763 4.96099 5.02079 5.08094 5.38537 5.40549 5.45615 5.55958 5.57842 5.69287 5.78775 5.83877 5.91594 6.02518 6.09806 6.13266 6.17399 6.29410 6.39478 6.50832 6.60078 6.67312 6.98750 7.14911 7.17002 7.27198 7.46978 7.68899 7.70665 7.85009 8.02696 8.46550 9.07721 9.64978 11.14089 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031019 B = 0.003670 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.442039 B = 7627.377776 C = 7928.716120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.188 3.812 4 C -0.173 4.173 5 N -0.676 5.676 6 C 0.062 3.938 7 C -0.082 4.082 8 H 0.053 0.947 9 C -0.123 4.123 10 C 0.029 3.971 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.073 3.927 20 N -0.480 5.480 21 C 0.038 3.962 22 C -0.285 4.285 23 S 0.160 5.840 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.337 0.663 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.012 0.988 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.171 0.829 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 1.958 20.578 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C 0.093 3.907 4 C -0.233 4.233 5 N -0.308 5.308 6 C -0.066 4.066 7 C -0.101 4.101 8 H 0.072 0.928 9 C -0.181 4.181 10 C -0.009 4.009 11 C -0.552 4.552 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.205 4.205 20 N -0.195 5.195 21 C -0.114 4.114 22 C -0.425 4.425 23 S 0.415 5.585 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.188 0.812 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.338 1.732 19.800 20.013 hybrid contribution 0.858 0.661 0.148 1.093 sum -1.480 2.394 19.948 20.146 Atomic orbital electron populations 1.21675 0.94882 1.00825 1.02715 1.21552 0.97204 0.92718 1.02505 1.19393 0.92727 0.94013 0.84552 1.22479 0.94971 1.02487 1.03385 1.60741 1.62141 1.05760 1.02153 1.22277 0.97876 0.99356 0.87076 1.21205 0.95615 0.98431 0.94808 0.92832 1.21603 0.95841 1.00675 0.99943 1.19102 0.96005 0.96230 0.89548 1.21195 1.31411 1.11582 0.90970 0.92634 1.25008 0.95319 0.95236 0.98908 1.69951 1.37695 1.26185 1.19829 0.86706 0.79308 0.80633 0.81628 1.20334 1.21402 1.20268 1.27055 0.98990 0.97489 0.97014 1.66159 1.24548 1.31008 0.97744 1.21731 0.97812 0.92858 0.98978 1.27206 1.09702 1.06257 0.99334 1.84285 1.47094 1.26423 1.00664 0.90524 0.93458 0.93872 0.90775 0.91261 0.91277 0.90739 0.92653 0.84454 0.94836 0.90686 0.93916 0.92791 0.94106 0.96944 0.96537 0.93050 0.81242 0.81022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.50 37.15 0.35 -1.46 16 2 C -0.10 -1.25 4.43 -26.73 -0.12 -1.37 16 3 C 0.19 2.35 0.63 -132.75 -0.08 2.27 16 4 C -0.17 -2.09 8.21 37.16 0.30 -1.79 16 5 N -0.68 -9.04 4.06 -101.14 -0.41 -9.45 16 6 C 0.06 0.98 4.15 -3.82 -0.02 0.96 16 7 C -0.08 -1.57 2.48 -90.62 -0.22 -1.80 16 8 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 9 C -0.12 -2.27 8.89 37.16 0.33 -1.94 16 10 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 11 C -0.51 -14.11 8.41 -34.44 -0.29 -14.40 16 12 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 C 0.07 0.90 4.80 -13.46 -0.06 0.84 16 20 N -0.48 -6.11 10.51 -11.86 -0.12 -6.24 16 21 C 0.04 0.40 11.35 -19.18 -0.22 0.18 16 22 C -0.29 -2.73 11.37 29.12 0.33 -2.40 16 23 S 0.16 1.75 21.94 -107.50 -2.36 -0.61 16 24 H 0.08 1.06 7.28 -51.93 -0.38 0.68 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.55 7.38 -51.93 -0.38 0.17 16 27 H 0.07 0.93 6.68 -51.93 -0.35 0.59 16 28 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.34 4.40 8.15 -39.29 -0.32 4.08 16 33 H 0.03 0.54 6.30 -51.93 -0.33 0.21 16 34 H 0.07 1.21 6.34 -51.93 -0.33 0.88 16 35 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 36 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -29.44 344.60 -8.81 -38.26 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.91 Total: 1.13 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.20 Total: -41.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.36 Total: -0.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.44 -8.81 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.700 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds