Wall clock time and date at job start Tue Mar 31 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47370 * 2 1 4 4 C 1.52994 * 109.47266 * 185.00070 * 3 2 1 5 5 N 1.46906 * 109.46958 * 304.99892 * 3 2 1 6 6 C 1.46902 * 110.99573 * 299.99941 * 5 3 2 7 7 C 1.53008 * 109.46622 * 179.97438 * 6 5 3 8 8 H 1.09003 * 109.47223 * 304.99930 * 7 6 5 9 9 C 1.52993 * 109.47083 * 65.00316 * 7 6 5 10 10 C 1.53008 * 109.46744 * 185.00131 * 7 6 5 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 7 6 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 7 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46854 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47323 * 120.00024 * 15 13 11 18 18 H 1.48495 * 109.47285 * 240.00104 * 15 13 11 19 19 C 1.50699 * 109.47163 * 64.99655 * 3 2 1 20 20 N 1.29031 * 124.91427 * 185.00376 * 19 3 2 21 21 C 1.31778 * 117.12338 * 179.97438 * 20 19 3 22 22 C 1.33649 * 114.49998 * 359.97438 * 21 20 19 23 23 S 1.70977 * 124.91809 * 4.69863 * 19 3 2 24 24 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46953 * 300.00128 * 1 2 3 26 26 H 1.09000 * 109.46667 * 60.00649 * 1 2 3 27 27 H 1.09000 * 109.47219 * 239.99414 * 2 1 3 28 28 H 1.08999 * 109.46893 * 120.00101 * 2 1 3 29 29 H 1.09002 * 109.47331 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47018 * 299.99607 * 4 3 2 31 31 H 1.08999 * 109.47836 * 59.99633 * 4 3 2 32 32 H 1.00896 * 111.00309 * 176.04353 * 5 3 2 33 33 H 1.08990 * 109.47358 * 299.99539 * 6 5 3 34 34 H 1.09004 * 109.47457 * 60.00221 * 6 5 3 35 35 H 1.09007 * 109.47182 * 299.99588 * 9 7 6 36 36 H 1.08994 * 109.47490 * 59.99490 * 9 7 6 37 37 H 1.09001 * 109.47025 * 180.02562 * 9 7 6 38 38 H 1.09005 * 109.46614 * 294.99810 * 10 7 6 39 39 H 1.08993 * 109.46898 * 55.00161 * 10 7 6 40 40 H 0.97005 * 119.99959 * 179.97438 * 14 13 11 41 41 H 1.07995 * 122.75040 * 180.02562 * 21 20 19 42 42 H 1.07997 * 126.03665 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 7 1.4544 2.1689 -1.1346 6 6 1.8227 1.5390 -2.4096 7 6 1.1951 2.3215 -3.5650 8 1 0.1184 2.3951 -3.4115 9 6 1.7999 3.7259 -3.6177 10 6 1.4740 1.5962 -4.8830 11 6 0.7538 2.2986 -6.0050 12 1 0.1564 3.1744 -5.7986 13 6 0.8573 1.8232 -7.2950 14 7 1.5843 0.7564 -7.5462 15 14 -0.0360 2.6933 -8.6857 16 1 -0.7803 3.8583 -8.1435 17 1 0.9510 3.1616 -9.6916 18 1 -0.9884 1.7521 -9.3277 19 6 1.6414 2.1163 1.2876 20 7 1.8384 3.3617 1.5612 21 6 1.4263 3.7911 2.7370 22 6 0.8489 2.8558 3.4973 23 16 0.8558 1.3428 2.5945 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9282 2.4719 -0.1262 30 1 3.9995 0.9053 0.7161 31 1 3.8533 0.9569 -1.0570 32 1 1.7247 3.1409 -1.1200 33 1 2.9074 1.5410 -2.5158 34 1 1.4578 0.5120 -2.4263 35 1 1.6012 4.2426 -2.6787 36 1 2.8765 3.6523 -3.7711 37 1 1.3525 4.2835 -4.4405 38 1 2.5461 1.6007 -5.0803 39 1 1.1217 0.5672 -4.8130 40 1 1.6569 0.4216 -8.4538 41 1 1.5446 4.8150 3.0593 42 1 0.4466 3.0023 4.4888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:04 Heat of formation + Delta-G solvation = 26.802147 kcal Electronic energy + Delta-G solvation = -20459.146403 eV Core-core repulsion = 17565.394293 eV Total energy + Delta-G solvation = -2893.752110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04757 -38.20722 -35.30101 -32.55636 -31.21284 -30.34913 -28.98639 -26.75887 -26.04577 -24.97276 -23.57842 -22.59955 -20.80157 -19.34979 -18.95990 -17.85985 -16.45936 -16.05448 -15.16967 -14.99719 -14.74718 -14.39448 -14.18626 -13.73618 -13.53570 -13.24736 -13.01574 -12.79721 -12.45802 -12.22414 -11.92275 -11.63923 -11.54327 -11.34182 -11.22549 -10.98608 -10.85770 -10.77437 -10.67654 -10.30187 -10.10877 -9.69961 -9.68285 -9.43086 -9.12137 -8.94629 -8.85824 -8.30930 -8.09415 -5.95712 -3.96361 0.63733 1.28531 1.70401 2.78563 3.33734 3.41430 3.45746 3.98026 4.41400 4.52756 4.63317 4.96766 5.00660 5.07399 5.31491 5.40391 5.40471 5.49932 5.57746 5.62094 5.77645 5.82422 5.84865 5.98112 6.03565 6.11398 6.15313 6.20805 6.34782 6.49286 6.54871 6.62676 6.98311 7.15343 7.20635 7.35440 7.68211 7.69729 7.72758 7.88934 8.04984 8.49262 9.10253 9.67055 11.15817 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.003553 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.444030 B = 7877.680078 C = 8103.737221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.189 3.811 4 C -0.175 4.175 5 N -0.669 5.669 6 C 0.060 3.940 7 C -0.083 4.083 8 H 0.064 0.936 9 C -0.134 4.134 10 C 0.029 3.971 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.077 3.923 20 N -0.473 5.473 21 C 0.041 3.959 22 C -0.284 4.284 23 S 0.139 5.861 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.349 0.651 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.258 0.742 41 H 0.171 0.829 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 0.119 22.321 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.094 3.906 4 C -0.235 4.235 5 N -0.302 5.302 6 C -0.069 4.069 7 C -0.101 4.101 8 H 0.083 0.917 9 C -0.192 4.192 10 C -0.009 4.009 11 C -0.549 4.549 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.201 4.201 20 N -0.187 5.187 21 C -0.110 4.110 22 C -0.423 4.423 23 S 0.394 5.606 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.170 0.830 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.068 0.932 41 H 0.188 0.812 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.134 -0.967 22.049 22.071 hybrid contribution 0.592 1.717 -0.513 1.888 sum 0.727 0.750 21.536 21.561 Atomic orbital electron populations 1.21921 0.94426 1.01396 1.03414 1.21756 0.97771 0.93605 1.02815 1.19445 0.92641 0.92996 0.85546 1.22515 0.95088 1.03113 1.02805 1.60745 1.61839 1.06681 1.00939 1.22287 0.97789 0.99060 0.87722 1.21213 0.99417 0.94621 0.94895 0.91711 1.21741 1.00030 0.97499 0.99908 1.19105 0.96843 0.95224 0.89695 1.21281 1.29278 1.12223 0.92145 0.92537 1.25013 0.95572 0.95104 0.98858 1.69977 1.40318 1.23218 1.20186 0.86589 0.79600 0.79715 0.82429 1.19757 1.21154 1.21106 1.27092 1.00070 0.92621 1.00335 1.66155 1.21013 1.13008 1.18529 1.21761 0.98935 1.01253 0.89097 1.27222 1.11408 0.97242 1.06425 1.84031 1.54429 1.13364 1.08773 0.92852 0.92793 0.90174 0.89832 0.91765 0.91651 0.92358 0.90685 0.83019 0.95176 0.90984 0.94885 0.94027 0.91954 0.96763 0.96674 0.93199 0.81169 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.33 37.16 0.35 -1.49 16 2 C -0.12 -1.40 4.01 -26.73 -0.11 -1.51 16 3 C 0.19 2.40 0.63 -132.75 -0.08 2.32 16 4 C -0.17 -2.12 8.21 37.15 0.31 -1.81 16 5 N -0.67 -9.94 5.12 -101.14 -0.52 -10.46 16 6 C 0.06 1.00 4.22 -3.82 -0.02 0.98 16 7 C -0.08 -1.67 2.55 -90.62 -0.23 -1.90 16 8 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 9 C -0.13 -2.56 8.77 37.15 0.33 -2.23 16 10 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 11 C -0.51 -14.28 8.41 -34.44 -0.29 -14.56 16 12 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.08 0.98 5.71 -13.45 -0.08 0.90 16 20 N -0.47 -6.34 10.42 -11.86 -0.12 -6.46 16 21 C 0.04 0.45 11.35 -19.18 -0.22 0.23 16 22 C -0.28 -2.69 11.37 29.12 0.33 -2.35 16 23 S 0.14 1.42 19.02 -107.50 -2.04 -0.63 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.62 5.08 -41.12 -0.21 0.41 16 26 H 0.08 1.13 7.28 -51.93 -0.38 0.75 16 27 H 0.08 1.00 6.68 -51.93 -0.35 0.65 16 28 H 0.06 0.64 7.57 -51.93 -0.39 0.24 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 32 H 0.35 5.45 6.86 -39.29 -0.27 5.18 16 33 H 0.03 0.50 6.30 -51.93 -0.33 0.17 16 34 H 0.07 1.21 6.34 -51.93 -0.33 0.88 16 35 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -30.11 337.79 -8.42 -38.53 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.60 Total: 2.68 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 0.07 Total: -19.33 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.10 Total: -43.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.04 Total: -0.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.11 -8.42 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.332 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds