Wall clock time and date at job start Tue Mar 31 2020 07:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47466 * 2 1 4 4 C 1.52996 * 109.47266 * 173.73675 * 3 2 1 5 5 N 1.46909 * 109.47226 * 53.73867 * 3 2 1 6 6 C 1.46896 * 110.99796 * 59.99756 * 5 3 2 7 7 C 1.53002 * 109.46999 * 180.02562 * 6 5 3 8 8 H 1.08997 * 109.47480 * 55.00173 * 7 6 5 9 9 C 1.53005 * 109.47079 * 295.00512 * 7 6 5 10 10 C 1.52999 * 109.47395 * 175.00534 * 7 6 5 11 11 C 1.50693 * 109.47225 * 184.99935 * 10 7 6 12 12 H 1.07998 * 120.00478 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99979 * 179.97438 * 11 10 7 14 14 N 1.31512 * 120.00032 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00137 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47058 * 90.00590 * 15 13 11 17 17 H 1.48502 * 109.47676 * 210.00454 * 15 13 11 18 18 H 1.48502 * 109.47518 * 330.00466 * 15 13 11 19 19 C 1.50705 * 109.47210 * 293.74182 * 3 2 1 20 20 N 1.29023 * 124.91826 * 170.02571 * 19 3 2 21 21 C 1.31778 * 117.12221 * 179.97438 * 20 19 3 22 22 C 1.33637 * 114.50335 * 0.02562 * 21 20 19 23 23 S 1.70981 * 124.91307 * 350.33944 * 19 3 2 24 24 H 1.08998 * 109.46839 * 293.22899 * 1 2 3 25 25 H 1.09000 * 109.46673 * 53.22741 * 1 2 3 26 26 H 1.08993 * 109.47025 * 173.22638 * 1 2 3 27 27 H 1.09002 * 109.47116 * 239.99691 * 2 1 3 28 28 H 1.09006 * 109.46823 * 120.00197 * 2 1 3 29 29 H 1.09000 * 109.47250 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.47477 * 299.99702 * 4 3 2 31 31 H 1.08999 * 109.46941 * 60.00054 * 4 3 2 32 32 H 1.00907 * 110.99429 * 296.05019 * 5 3 2 33 33 H 1.08992 * 109.47701 * 300.00382 * 6 5 3 34 34 H 1.09001 * 109.46738 * 60.00531 * 6 5 3 35 35 H 1.09006 * 109.47020 * 299.99648 * 9 7 6 36 36 H 1.08998 * 109.47247 * 59.99759 * 9 7 6 37 37 H 1.08998 * 109.46884 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.46996 * 305.00050 * 10 7 6 39 39 H 1.08999 * 109.47183 * 64.99787 * 10 7 6 40 40 H 0.97000 * 120.00585 * 179.97438 * 14 13 11 41 41 H 1.08005 * 122.74733 * 180.02562 * 21 20 19 42 42 H 1.08003 * 126.04210 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5620 1.4452 0.1574 5 7 1.4310 2.1772 1.1168 6 6 1.7726 1.5568 2.4037 7 6 1.1213 2.3477 3.5400 8 1 0.0481 2.4202 3.3638 9 6 1.7250 3.7526 3.5949 10 6 1.3728 1.6324 4.8689 11 6 0.6295 2.3430 5.9705 12 1 0.0366 3.2172 5.7453 13 6 0.7054 1.8765 7.2657 14 7 1.4269 0.8117 7.5399 15 14 -0.2154 2.7577 8.6313 16 1 -1.5757 2.1774 8.7656 17 1 0.5209 2.5943 9.9105 18 1 -0.3235 4.2021 8.3036 19 6 1.6683 2.1068 -1.3006 20 7 1.7873 3.3678 -1.5463 21 6 1.4147 3.7852 -2.7394 22 6 0.9554 2.8228 -3.5448 23 16 1.0205 1.2996 -2.6616 24 1 -0.3633 0.4053 0.9444 25 1 -0.3633 0.6152 -0.8232 26 1 -0.3633 -1.0204 -0.1212 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9254 2.4729 0.1569 30 1 3.8309 0.9649 1.0981 31 1 4.0139 0.9001 -0.6713 32 1 0.4308 2.2450 1.0022 33 1 1.4075 0.5300 2.4205 34 1 2.8550 1.5596 2.5325 35 1 2.7983 3.6802 3.7713 36 1 1.5459 4.2623 2.6482 37 1 1.2613 4.3159 4.4047 38 1 1.0219 0.6027 4.7993 39 1 2.4404 1.6383 5.0884 40 1 1.4806 0.4837 8.4512 41 1 1.4756 4.8203 -3.0415 42 1 0.6022 2.9559 -4.5567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:09 Heat of formation + Delta-G solvation = 27.890139 kcal Electronic energy + Delta-G solvation = -20461.181811 eV Core-core repulsion = 17567.476880 eV Total energy + Delta-G solvation = -2893.704931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05643 -38.29426 -35.25092 -32.48336 -31.05339 -30.46545 -29.19704 -26.74186 -26.02268 -24.82552 -23.66274 -22.61780 -20.77404 -19.37308 -19.10543 -17.67632 -16.31109 -16.01100 -15.41770 -15.07637 -14.82564 -14.47426 -14.29297 -13.73267 -13.52497 -13.24281 -13.08875 -12.59385 -12.34861 -12.14469 -11.83869 -11.66591 -11.48359 -11.37976 -11.21795 -11.13929 -10.95144 -10.83214 -10.65383 -10.24279 -10.17987 -9.64617 -9.60261 -9.43763 -9.10650 -8.97257 -8.87388 -8.30038 -8.06443 -5.95125 -3.95769 0.61229 1.25088 1.66639 2.81108 3.34863 3.41254 3.45082 3.96912 4.35424 4.51620 4.67030 4.89489 4.96122 5.04697 5.12879 5.38325 5.40873 5.45222 5.48946 5.67791 5.71983 5.77587 5.88637 5.90197 5.96109 6.09756 6.12276 6.23317 6.30546 6.50084 6.61218 6.76550 7.07059 7.23761 7.26018 7.36922 7.64151 7.72815 7.76552 7.89071 8.05502 8.50067 9.10647 9.67491 11.16417 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032020 B = 0.003551 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.240916 B = 7882.599069 C = 8118.762447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.163 4.163 3 C 0.192 3.808 4 C -0.134 4.134 5 N -0.659 5.659 6 C 0.060 3.940 7 C -0.081 4.081 8 H 0.051 0.949 9 C -0.123 4.123 10 C 0.029 3.971 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.073 3.927 20 N -0.448 5.448 21 C 0.038 3.962 22 C -0.276 4.276 23 S 0.114 5.886 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.339 0.661 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.173 0.827 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -0.756 -22.616 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.203 4.203 3 C 0.097 3.903 4 C -0.193 4.193 5 N -0.291 5.291 6 C -0.069 4.069 7 C -0.100 4.100 8 H 0.070 0.930 9 C -0.180 4.180 10 C -0.009 4.009 11 C -0.550 4.550 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.207 4.207 20 N -0.161 5.161 21 C -0.113 4.113 22 C -0.415 4.415 23 S 0.368 5.632 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.190 0.810 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.876 -1.051 -22.269 22.311 hybrid contribution -1.076 0.558 0.408 1.279 sum -0.200 -0.492 -21.861 21.867 Atomic orbital electron populations 1.22008 0.95187 1.02550 1.02564 1.22408 0.97090 0.97189 1.03578 1.19455 0.96268 0.89351 0.85273 1.21864 0.91869 1.03531 1.02009 1.60636 1.15946 1.52178 1.00342 1.22301 1.01101 0.95819 0.87630 1.21189 0.98113 0.95641 0.95029 0.93004 1.21586 0.99740 0.96651 1.00038 1.19109 0.97069 0.95027 0.89693 1.21244 1.29018 1.12280 0.92421 0.92599 1.25010 0.95613 0.95118 0.98787 1.69961 1.40506 1.23520 1.19746 0.86644 0.79801 0.80180 0.81680 1.20808 1.21327 1.19880 1.27182 1.01355 0.92175 0.99955 1.66212 1.17650 1.13416 1.18785 1.21911 0.99686 1.01283 0.88415 1.27178 1.12263 0.96025 1.06031 1.84048 1.59109 1.12389 1.07631 0.91740 0.92356 0.91838 0.91398 0.89463 0.90807 0.90965 0.92680 0.84183 0.95195 0.90954 0.94193 0.93725 0.92940 0.96984 0.96553 0.93145 0.81045 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 8.84 37.16 0.33 -1.46 16 2 C -0.16 -1.79 3.99 -26.73 -0.11 -1.90 16 3 C 0.19 2.41 0.69 -132.75 -0.09 2.32 16 4 C -0.13 -1.65 8.22 37.16 0.31 -1.34 16 5 N -0.66 -9.74 5.34 -101.14 -0.54 -10.28 16 6 C 0.06 1.00 4.08 -3.83 -0.02 0.98 16 7 C -0.08 -1.64 2.48 -90.62 -0.22 -1.87 16 8 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 9 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 10 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 11 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 12 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.07 0.90 5.51 -13.46 -0.07 0.83 16 20 N -0.45 -6.13 10.54 -11.86 -0.13 -6.25 16 21 C 0.04 0.42 11.35 -19.19 -0.22 0.20 16 22 C -0.28 -2.54 11.37 29.12 0.33 -2.21 16 23 S 0.11 1.12 19.44 -107.50 -2.09 -0.97 16 24 H 0.06 0.78 6.61 -51.93 -0.34 0.44 16 25 H 0.06 0.61 5.54 -51.90 -0.29 0.32 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.66 7.40 -51.93 -0.38 0.27 16 28 H 0.09 1.01 6.76 -51.93 -0.35 0.66 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 5.03 7.08 -39.29 -0.28 4.75 16 33 H 0.03 0.49 6.11 -51.93 -0.32 0.18 16 34 H 0.07 1.23 6.30 -51.93 -0.33 0.90 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 37 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.60 338.58 -8.58 -39.18 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.69 Total: 1.80 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 0.05 Total: -19.13 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.07 Total: -42.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.09 Total: -0.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.60 -8.58 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.068 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds