Wall clock time and date at job start Tue Mar 31 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47466 * 2 1 4 4 C 1.52996 * 109.47266 * 173.73675 * 3 2 1 5 5 N 1.46909 * 109.47226 * 53.73867 * 3 2 1 6 6 C 1.46896 * 110.99796 * 59.99756 * 5 3 2 7 7 C 1.53002 * 109.46999 * 180.02562 * 6 5 3 8 8 H 1.08997 * 109.47480 * 55.00173 * 7 6 5 9 9 C 1.53005 * 109.47079 * 295.00512 * 7 6 5 10 10 C 1.52999 * 109.47395 * 175.00534 * 7 6 5 11 11 C 1.50693 * 109.47225 * 184.99935 * 10 7 6 12 12 H 1.07998 * 120.00478 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99979 * 179.97438 * 11 10 7 14 14 N 1.31512 * 120.00032 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00137 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47058 * 90.00590 * 15 13 11 17 17 H 1.48502 * 109.47676 * 210.00454 * 15 13 11 18 18 H 1.48502 * 109.47518 * 330.00466 * 15 13 11 19 19 C 1.50705 * 109.47210 * 293.74182 * 3 2 1 20 20 N 1.29023 * 124.91826 * 170.02571 * 19 3 2 21 21 C 1.31778 * 117.12221 * 179.97438 * 20 19 3 22 22 C 1.33637 * 114.50335 * 0.02562 * 21 20 19 23 23 S 1.70981 * 124.91307 * 350.33944 * 19 3 2 24 24 H 1.08998 * 109.46839 * 293.22899 * 1 2 3 25 25 H 1.09000 * 109.46673 * 53.22741 * 1 2 3 26 26 H 1.08993 * 109.47025 * 173.22638 * 1 2 3 27 27 H 1.09002 * 109.47116 * 239.99691 * 2 1 3 28 28 H 1.09006 * 109.46823 * 120.00197 * 2 1 3 29 29 H 1.09000 * 109.47250 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.47477 * 299.99702 * 4 3 2 31 31 H 1.08999 * 109.46941 * 60.00054 * 4 3 2 32 32 H 1.00907 * 110.99429 * 296.05019 * 5 3 2 33 33 H 1.08992 * 109.47701 * 300.00382 * 6 5 3 34 34 H 1.09001 * 109.46738 * 60.00531 * 6 5 3 35 35 H 1.09006 * 109.47020 * 299.99648 * 9 7 6 36 36 H 1.08998 * 109.47247 * 59.99759 * 9 7 6 37 37 H 1.08998 * 109.46884 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.46996 * 305.00050 * 10 7 6 39 39 H 1.08999 * 109.47183 * 64.99787 * 10 7 6 40 40 H 0.97000 * 120.00585 * 179.97438 * 14 13 11 41 41 H 1.08005 * 122.74733 * 180.02562 * 21 20 19 42 42 H 1.08003 * 126.04210 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5620 1.4452 0.1574 5 7 1.4310 2.1772 1.1168 6 6 1.7726 1.5568 2.4037 7 6 1.1213 2.3477 3.5400 8 1 0.0481 2.4202 3.3638 9 6 1.7250 3.7526 3.5949 10 6 1.3728 1.6324 4.8689 11 6 0.6295 2.3430 5.9705 12 1 0.0366 3.2172 5.7453 13 6 0.7054 1.8765 7.2657 14 7 1.4269 0.8117 7.5399 15 14 -0.2154 2.7577 8.6313 16 1 -1.5757 2.1774 8.7656 17 1 0.5209 2.5943 9.9105 18 1 -0.3235 4.2021 8.3036 19 6 1.6683 2.1068 -1.3006 20 7 1.7873 3.3678 -1.5463 21 6 1.4147 3.7852 -2.7394 22 6 0.9554 2.8228 -3.5448 23 16 1.0205 1.2996 -2.6616 24 1 -0.3633 0.4053 0.9444 25 1 -0.3633 0.6152 -0.8232 26 1 -0.3633 -1.0204 -0.1212 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9254 2.4729 0.1569 30 1 3.8309 0.9649 1.0981 31 1 4.0139 0.9001 -0.6713 32 1 0.4308 2.2450 1.0022 33 1 1.4075 0.5300 2.4205 34 1 2.8550 1.5596 2.5325 35 1 2.7983 3.6802 3.7713 36 1 1.5459 4.2623 2.6482 37 1 1.2613 4.3159 4.4047 38 1 1.0219 0.6027 4.7993 39 1 2.4404 1.6383 5.0884 40 1 1.4806 0.4837 8.4512 41 1 1.4756 4.8203 -3.0415 42 1 0.6022 2.9559 -4.5567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:08 Heat of formation + Delta-G solvation = 9.110848 kcal Electronic energy + Delta-G solvation = -20461.996143 eV Core-core repulsion = 17567.476880 eV Total energy + Delta-G solvation = -2894.519263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96462 -39.35266 -36.89709 -34.46209 -32.18496 -31.56184 -30.16278 -28.70478 -27.17895 -26.16125 -24.64376 -24.30828 -21.77718 -20.69914 -20.29007 -18.58997 -18.43895 -17.02203 -16.56920 -16.50361 -15.98235 -15.76564 -15.44978 -15.04394 -14.62452 -14.36115 -14.30154 -14.04651 -13.88817 -13.32701 -13.27746 -13.08578 -12.78597 -12.69876 -12.60687 -12.36707 -12.22568 -12.16098 -12.06136 -11.94593 -11.85383 -11.41317 -11.06189 -10.93430 -10.51154 -10.41546 -10.23400 -9.71957 -9.25452 -8.15781 -6.24191 -0.19182 0.46647 0.87870 1.40629 1.41479 1.52553 1.97844 2.43256 3.11857 3.17681 3.24619 3.72156 3.96651 4.14357 4.15495 4.28887 4.39119 4.44253 4.50163 4.57052 4.62592 4.64375 4.72033 4.82470 4.95447 4.99082 5.00536 5.04177 5.10573 5.23494 5.26912 5.32994 5.35752 5.48870 5.52707 5.59598 5.83975 5.91703 6.08636 6.34428 6.44652 6.91494 6.95005 7.43708 8.96123 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032020 B = 0.003551 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.240916 B = 7882.599069 C = 8118.762447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.158 4.158 3 C 0.191 3.809 4 C -0.132 4.132 5 N -0.663 5.663 6 C 0.077 3.923 7 C -0.072 4.072 8 H 0.049 0.951 9 C -0.112 4.112 10 C 0.036 3.964 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.958 3.042 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.045 3.955 20 N -0.481 5.481 21 C 0.014 3.986 22 C -0.261 4.261 23 S 0.152 5.848 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.339 0.661 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.034 0.966 38 H -0.011 1.011 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.189 0.811 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -0.545 -24.460 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.198 4.198 3 C 0.096 3.904 4 C -0.190 4.190 5 N -0.294 5.294 6 C -0.052 4.052 7 C -0.091 4.091 8 H 0.068 0.932 9 C -0.169 4.169 10 C -0.002 4.002 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.783 3.217 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.233 4.233 20 N -0.195 5.195 21 C -0.136 4.136 22 C -0.400 4.400 23 S 0.406 5.594 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.070 0.930 41 H 0.206 0.794 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.039 -0.837 -24.127 24.142 hybrid contribution -0.791 0.480 0.867 1.268 sum -0.830 -0.356 -23.260 23.277 Atomic orbital electron populations 1.21988 0.94920 1.03367 1.01782 1.22357 0.97261 0.96109 1.04088 1.19475 0.96051 0.90041 0.84810 1.21837 0.92088 1.02592 1.02532 1.60535 1.16054 1.52698 1.00146 1.21951 1.00315 0.95239 0.87696 1.20993 0.98383 0.95839 0.93882 0.93221 1.21463 0.99129 0.96142 1.00151 1.18977 0.94927 0.94192 0.92088 1.21637 1.29128 1.12445 0.93467 0.92417 1.25900 0.96503 0.95867 1.01488 1.70088 1.41914 1.25013 1.20450 0.85552 0.78589 0.79233 0.78322 1.19877 1.20890 1.18996 1.27016 1.03034 0.92516 1.00777 1.66188 1.18454 1.14397 1.20475 1.22216 1.00693 1.02606 0.88100 1.27604 1.10208 0.95217 1.06983 1.83842 1.57713 1.11932 1.05868 0.93489 0.91888 0.90469 0.89527 0.90266 0.92569 0.91487 0.90814 0.84205 0.95094 0.91339 0.94621 0.92075 0.94648 0.99240 0.99092 0.92962 0.79448 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.84 71.98 0.64 -2.66 16 2 C -0.16 -3.28 3.99 30.59 0.12 -3.16 16 3 C 0.19 4.65 0.69 2.78 0.00 4.65 16 4 C -0.13 -3.19 8.22 71.98 0.59 -2.59 16 5 N -0.66 -19.44 5.34 -473.90 -2.53 -21.97 16 6 C 0.08 2.61 4.08 86.30 0.35 2.96 16 7 C -0.07 -2.99 2.48 -10.79 -0.03 -3.01 16 8 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 9 C -0.11 -4.49 8.89 71.98 0.64 -3.85 16 10 C 0.04 1.88 4.45 29.85 0.13 2.02 16 11 C -0.53 -30.22 8.41 25.60 0.22 -30.00 16 12 H 0.06 3.21 7.06 -2.91 -0.02 3.19 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 15 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 C 0.04 1.05 5.51 88.52 0.49 1.54 16 20 N -0.48 -12.64 10.54 -191.44 -2.02 -14.66 16 21 C 0.01 0.28 11.35 83.66 0.95 1.23 16 22 C -0.26 -4.02 11.37 66.78 0.76 -3.26 16 23 S 0.15 2.58 19.44 -56.49 -1.10 1.48 16 24 H 0.05 1.11 6.61 -2.39 -0.02 1.10 16 25 H 0.06 1.20 5.54 -2.40 -0.01 1.19 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.47 7.40 -2.39 -0.02 1.45 16 28 H 0.08 1.78 6.76 -2.38 -0.02 1.77 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.65 6.40 -2.39 -0.02 1.64 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.34 9.94 7.08 -89.69 -0.64 9.31 16 33 H 0.03 1.04 6.11 -2.39 -0.01 1.03 16 34 H 0.07 2.38 6.30 -2.39 -0.02 2.37 16 35 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.06 2.24 7.75 -2.39 -0.02 2.23 16 37 H 0.03 1.51 6.95 -2.39 -0.02 1.49 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -66.25 338.58 2.36 -63.89 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.37 Total: 16.88 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 5.32 Total: -35.70 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -4.27 Total: -93.55 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.10 Total: 1.48 kcal Total: -66.25 2.36 -63.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.002 kcal (2) G-P(sol) polarization free energy of solvation -66.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds