Wall clock time and date at job start Tue Mar 31 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47592 * 2 1 4 4 N 1.29023 * 124.91798 * 89.99826 * 3 2 1 5 5 C 1.31777 * 117.12434 * 180.02562 * 4 3 2 6 6 C 1.50702 * 122.74708 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46671 * 215.02817 * 6 5 4 8 8 C 1.52991 * 109.47742 * 95.02324 * 6 5 4 9 9 N 1.46910 * 109.47158 * 335.02072 * 6 5 4 10 10 C 1.46898 * 111.00101 * 205.00326 * 9 6 5 11 11 C 1.52992 * 109.47092 * 179.97438 * 10 9 6 12 12 H 1.08998 * 109.46862 * 55.00713 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00148 * 11 10 9 14 14 C 1.53006 * 109.47223 * 174.99860 * 11 10 9 15 15 C 1.50695 * 109.47196 * 185.00102 * 14 11 10 16 16 H 1.07999 * 120.00313 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99880 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99938 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47272 * 89.99333 * 19 17 15 21 21 H 1.48495 * 109.47088 * 209.99759 * 19 17 15 22 22 H 1.48505 * 109.46976 * 329.99813 * 19 17 15 23 23 C 1.33633 * 114.50289 * 0.23120 * 5 4 3 24 24 S 1.70976 * 124.91224 * 270.00342 * 3 2 1 25 25 H 1.08992 * 109.47336 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46538 * 300.00112 * 1 2 3 27 27 H 1.09000 * 109.47112 * 59.99539 * 1 2 3 28 28 H 1.09003 * 109.47245 * 239.99679 * 2 1 3 29 29 H 1.09000 * 109.47112 * 120.00461 * 2 1 3 30 30 H 1.09003 * 109.47440 * 300.00023 * 8 6 5 31 31 H 1.09007 * 109.46831 * 59.99435 * 8 6 5 32 32 H 1.08995 * 109.47766 * 179.97438 * 8 6 5 33 33 H 1.00896 * 110.99817 * 81.04932 * 9 6 5 34 34 H 1.09002 * 109.47308 * 60.00022 * 10 9 6 35 35 H 1.09006 * 109.47288 * 300.00665 * 10 9 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 37 37 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.47135 * 305.00448 * 14 11 10 40 40 H 1.08996 * 109.46945 * 64.99955 * 14 11 10 41 41 H 0.96995 * 120.00259 * 180.02562 * 18 17 15 42 42 H 1.07997 * 126.03953 * 179.76729 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2787 2.1171 1.0580 5 6 2.7135 3.3481 0.8793 6 6 3.0394 4.2719 2.0245 7 1 2.7749 5.2940 1.7534 8 6 4.5366 4.1966 2.3304 9 7 2.2759 3.8672 3.2126 10 6 2.0824 5.0016 4.1256 11 6 1.2846 4.5424 5.3476 12 1 1.7863 3.6927 5.8106 13 6 -0.1225 4.1287 4.9121 14 6 1.1899 5.6897 6.3555 15 6 0.5117 5.2019 7.6096 16 1 0.1815 4.1761 7.6810 17 6 0.3135 6.0650 8.6665 18 7 -0.2789 5.6394 9.7608 19 14 0.8851 7.8391 8.5435 20 1 -0.2069 8.6731 7.9804 21 1 1.2428 8.3387 9.8953 22 1 2.0739 7.9157 7.6567 23 6 2.8365 3.7122 -0.4006 24 16 2.3586 2.3434 -1.4021 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.8011 3.1745 2.6015 31 1 5.1030 4.4968 1.4488 32 1 4.7724 4.8650 3.1584 33 1 2.7233 3.0956 3.6844 34 1 1.5360 5.7925 3.6117 35 1 3.0532 5.3799 4.4460 36 1 -0.0551 3.3113 4.1941 37 1 -0.6241 4.9785 4.4492 38 1 -0.6907 3.8010 5.7828 39 1 2.1919 6.0436 6.5984 40 1 0.6111 6.5060 5.9234 41 1 -0.4186 6.2466 10.5042 42 1 3.1717 4.6746 -0.7581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602553937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:47 Heat of formation + Delta-G solvation = 19.733380 kcal Electronic energy + Delta-G solvation = -19745.227695 eV Core-core repulsion = 16851.169060 eV Total energy + Delta-G solvation = -2894.058635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.13319 -37.22152 -35.01071 -33.73717 -32.15582 -30.27184 -28.69571 -27.20482 -25.93941 -25.04518 -23.56877 -21.91321 -21.32865 -19.80466 -19.05780 -17.51475 -16.75505 -15.78336 -15.32360 -14.82388 -14.70892 -14.57856 -14.24480 -13.93576 -13.62162 -13.25710 -13.01835 -12.88484 -12.46612 -12.28830 -12.22711 -11.90642 -11.61118 -11.57562 -11.47692 -11.33771 -11.17852 -10.91092 -10.70507 -10.40893 -9.73781 -9.70153 -9.61333 -9.46332 -9.35298 -9.01223 -8.79079 -8.47952 -8.06774 -5.98190 -3.94682 0.62643 1.26964 1.62919 2.77813 3.33870 3.40991 3.44546 3.91804 4.39992 4.50044 4.66050 4.86233 4.98485 5.00132 5.08287 5.15263 5.30554 5.35390 5.41850 5.56592 5.58006 5.65182 5.71854 5.75157 5.85200 5.94186 5.99691 6.10090 6.18717 6.36664 6.49740 6.67317 6.90693 7.11744 7.21085 7.29754 7.37372 7.52773 7.70136 7.80963 7.87525 8.62199 9.08235 9.64835 11.15387 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.003317 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.415392 B = 8438.303321 C = 9140.067171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.053 3.947 4 N -0.441 5.441 5 C 0.097 3.903 6 C 0.155 3.845 7 H 0.091 0.909 8 C -0.176 4.176 9 N -0.668 5.668 10 C 0.061 3.939 11 C -0.072 4.072 12 H 0.060 0.940 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.267 4.267 24 S 0.090 5.910 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.346 0.654 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.261 0.739 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 -7.669 -24.647 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.226 4.226 4 N -0.155 5.155 5 C -0.036 4.036 6 C 0.041 3.959 7 H 0.109 0.891 8 C -0.236 4.236 9 N -0.298 5.298 10 C -0.068 4.068 11 C -0.091 4.091 12 H 0.078 0.922 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.406 4.406 24 S 0.345 5.655 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.679 -7.960 -25.338 27.385 hybrid contribution 1.361 1.824 1.083 2.520 sum 8.040 -6.136 -24.255 26.279 Atomic orbital electron populations 1.21766 0.93393 1.02484 1.02925 1.20205 0.96861 0.87604 1.04005 1.27158 1.03071 1.01756 0.90569 1.66037 1.13138 1.05624 1.30663 1.20278 0.98506 0.91250 0.93517 1.20044 0.91536 0.95567 0.88729 0.89112 1.22481 0.96278 1.02656 1.02162 1.60387 1.52045 1.09445 1.07942 1.22234 0.98313 0.92523 0.93706 1.20982 0.95687 0.99368 0.93072 0.92197 1.21586 0.96334 0.99853 1.00309 1.19614 0.96377 0.93936 0.94740 1.21147 1.37440 0.98980 0.97335 0.90819 1.25033 0.94868 0.98439 0.95301 1.69915 1.43557 1.35777 1.05298 0.86801 0.79702 0.85743 0.77151 1.20397 1.21538 1.19148 1.26674 1.13949 1.04239 0.95744 1.83838 1.61611 1.06321 1.13741 0.91491 0.91478 0.92586 0.90015 0.88721 0.92093 0.92253 0.91609 0.83480 0.91697 0.95771 0.93544 0.94416 0.92369 0.96995 0.97117 0.92875 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.05 -0.38 6.52 -27.88 -0.18 -0.56 16 3 C 0.05 0.59 6.64 -13.46 -0.09 0.50 16 4 N -0.44 -5.93 10.14 -8.06 -0.08 -6.02 16 5 C 0.10 1.22 5.80 -84.23 -0.49 0.74 16 6 C 0.15 1.93 2.93 -68.86 -0.20 1.73 16 7 H 0.09 1.08 7.80 -51.93 -0.40 0.68 16 8 C -0.18 -1.91 9.14 37.15 0.34 -1.57 16 9 N -0.67 -9.93 5.39 -107.95 -0.58 -10.51 16 10 C 0.06 1.01 4.87 -3.83 -0.02 0.99 16 11 C -0.07 -1.46 2.48 -90.62 -0.22 -1.68 16 12 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.12 -2.48 8.89 37.16 0.33 -2.15 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 15 C -0.51 -14.68 8.96 -34.44 -0.31 -14.98 16 16 H 0.07 2.28 7.30 -52.49 -0.38 1.89 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 19 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 C -0.27 -2.81 11.14 29.12 0.32 -2.49 16 24 S 0.09 0.84 23.18 -107.50 -2.49 -1.65 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.72 7.45 -51.93 -0.39 0.34 16 33 H 0.35 5.21 8.47 -39.29 -0.33 4.88 16 34 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 36 H 0.05 0.87 7.75 -51.93 -0.40 0.46 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.29 6.95 -51.93 -0.36 0.92 16 39 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -31.69 352.77 -9.32 -41.01 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.24 Total: 0.79 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.35 Total: -18.79 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.11 Total: -44.09 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.69 -9.32 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.744 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds