Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47184 * 2 1 4 4 N 1.29030 * 124.91519 * 90.00298 * 3 2 1 5 5 C 1.31780 * 117.12677 * 180.02562 * 4 3 2 6 6 C 1.50694 * 122.75390 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47450 * 215.02560 * 6 5 4 8 8 C 1.53003 * 109.46941 * 95.02478 * 6 5 4 9 9 N 1.46900 * 109.46881 * 335.02798 * 6 5 4 10 10 C 1.46897 * 110.99727 * 204.99699 * 9 6 5 11 11 C 1.53005 * 109.46940 * 179.97438 * 10 9 6 12 12 H 1.08995 * 109.47448 * 304.99654 * 11 10 9 13 13 C 1.53001 * 109.47080 * 65.00472 * 11 10 9 14 14 C 1.53002 * 109.46893 * 184.99774 * 11 10 9 15 15 C 1.50706 * 109.47153 * 174.99718 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.33642 * 114.49453 * 0.22942 * 5 4 3 24 24 S 1.70976 * 124.91563 * 270.00264 * 3 2 1 25 25 H 1.08991 * 109.47379 * 60.00061 * 1 2 3 26 26 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47156 * 299.99521 * 1 2 3 28 28 H 1.09006 * 109.47028 * 240.00127 * 2 1 3 29 29 H 1.09001 * 109.47657 * 120.00429 * 2 1 3 30 30 H 1.09007 * 109.46672 * 300.00160 * 8 6 5 31 31 H 1.08997 * 109.47308 * 59.99834 * 8 6 5 32 32 H 1.08998 * 109.47231 * 180.02562 * 8 6 5 33 33 H 1.00902 * 110.99874 * 328.94997 * 9 6 5 34 34 H 1.08997 * 109.47423 * 60.00043 * 10 9 6 35 35 H 1.09001 * 109.47481 * 299.99662 * 10 9 6 36 36 H 1.09000 * 109.46932 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46866 * 299.99538 * 13 11 10 38 38 H 1.09000 * 109.47309 * 59.99633 * 13 11 10 39 39 H 1.09004 * 109.47178 * 55.00508 * 14 11 10 40 40 H 1.08993 * 109.47411 * 295.00191 * 14 11 10 41 41 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 42 42 H 1.08004 * 126.03352 * 179.76808 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7133 3.3482 0.8795 6 6 3.0392 4.2719 2.0246 7 1 2.7747 5.2940 1.7537 8 6 4.5365 4.1966 2.3302 9 7 2.2760 3.8671 3.2127 10 6 2.0826 5.0014 4.1258 11 6 1.2850 4.5420 5.3480 12 1 0.3519 4.0830 5.0215 13 6 2.1062 3.5215 6.1387 14 6 0.9762 5.7475 6.2381 15 6 0.0875 5.3170 7.3765 16 1 -0.2253 4.2864 7.4573 17 6 -0.3262 6.2385 8.3148 18 7 0.0591 7.4924 8.2194 19 14 -1.4271 5.7047 9.7264 20 1 -1.7221 6.8736 10.5935 21 1 -2.6968 5.1576 9.1842 22 1 -0.7376 4.6585 10.5234 23 6 2.8362 3.7122 -0.4005 24 16 2.3585 2.3435 -1.4020 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8010 3.1744 2.6012 31 1 5.1029 4.4969 1.4487 32 1 4.7723 4.8644 3.1588 33 1 1.3914 3.4577 2.9520 34 1 1.5360 5.7923 3.6121 35 1 3.0533 5.3796 4.4462 36 1 1.5378 3.1939 7.0092 37 1 2.3262 2.6626 5.5047 38 1 3.0393 3.9806 6.4653 39 1 0.4686 6.5125 5.6504 40 1 1.9062 6.1529 6.6364 41 1 0.6310 7.7696 7.4866 42 1 3.1714 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602553939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = 13.385731 kcal Electronic energy + Delta-G solvation = -19722.298210 eV Core-core repulsion = 16827.964320 eV Total energy + Delta-G solvation = -2894.333890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26973 -37.11937 -35.05373 -33.79090 -32.24735 -30.22632 -28.70173 -26.39135 -26.04415 -25.07768 -23.50838 -22.20829 -21.12625 -19.87996 -19.28729 -17.64119 -16.63931 -15.90350 -15.34466 -15.23840 -14.82439 -14.22623 -14.17015 -13.68284 -13.56672 -13.43408 -13.21935 -12.82656 -12.25765 -12.18863 -11.96740 -11.89018 -11.81295 -11.57687 -11.41688 -11.21502 -11.02157 -10.89880 -10.62134 -10.15698 -10.04643 -9.75872 -9.71104 -9.57695 -9.37266 -8.90261 -8.41651 -8.25221 -8.08262 -6.28048 -3.95571 0.51771 1.16699 1.52840 2.64421 3.48183 3.50458 3.68842 3.79012 4.37550 4.56176 4.61875 4.79261 4.91859 4.94627 5.15542 5.29486 5.34227 5.36351 5.48406 5.51898 5.65134 5.67026 5.71939 5.83915 5.87195 5.91874 6.03526 6.12358 6.29420 6.40040 6.52187 6.68569 6.96577 7.14835 7.19213 7.32152 7.47350 7.63221 7.65792 7.76671 8.32616 8.55487 8.97526 9.75725 11.12448 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.003222 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.927493 B = 8687.725536 C = 9360.538242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.055 3.945 4 N -0.447 5.447 5 C 0.077 3.923 6 C 0.157 3.843 7 H 0.056 0.944 8 C -0.133 4.133 9 N -0.669 5.669 10 C 0.061 3.939 11 C -0.074 4.074 12 H 0.054 0.946 13 C -0.121 4.121 14 C 0.014 3.986 15 C -0.592 4.592 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C -0.261 4.261 24 S 0.100 5.900 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.345 0.655 34 H 0.021 0.979 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.002 0.998 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -12.268 -21.740 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.224 4.224 4 N -0.161 5.161 5 C -0.056 4.056 6 C 0.044 3.956 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.301 5.301 10 C -0.067 4.067 11 C -0.093 4.093 12 H 0.072 0.928 13 C -0.178 4.178 14 C -0.023 4.023 15 C -0.631 4.631 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.896 3.104 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.400 4.400 24 S 0.355 5.645 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.164 0.836 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.025 0.975 41 H 0.078 0.922 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.517 -12.387 -20.624 24.682 hybrid contribution 0.396 0.698 -1.282 1.512 sum 5.913 -11.689 -21.905 25.523 Atomic orbital electron populations 1.21769 0.93373 1.02623 1.02820 1.20228 0.96835 0.87485 1.04225 1.27183 1.02736 1.01911 0.90588 1.66051 1.13792 1.05351 1.30884 1.20424 0.99653 0.91554 0.93946 1.20096 0.95875 0.93363 0.86234 0.92649 1.21763 0.93199 1.03105 1.01042 1.60480 1.24654 1.30945 1.14036 1.22250 0.99954 0.90684 0.93831 1.21036 0.96632 0.98155 0.93450 0.92800 1.21564 0.98871 0.98012 0.99382 1.19249 0.96110 0.92548 0.94398 1.22043 1.32711 0.97091 1.11211 0.93215 1.25821 0.98520 0.93983 1.00798 1.70779 1.34341 1.16886 1.33377 0.83570 0.75788 0.75365 0.75697 1.20884 1.21550 1.21464 1.26756 1.13140 1.04345 0.95750 1.83875 1.61190 1.05956 1.13455 0.92541 0.91358 0.91616 0.89850 0.88553 0.91728 0.92973 0.91743 0.83566 0.96078 0.91513 0.92777 0.93586 0.94340 0.97968 0.97493 0.92221 0.80737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.37 6.52 -27.89 -0.18 -0.55 16 3 C 0.05 0.59 6.64 -13.45 -0.09 0.50 16 4 N -0.45 -6.00 9.76 -8.06 -0.08 -6.08 16 5 C 0.08 0.98 5.59 -84.23 -0.47 0.51 16 6 C 0.16 2.12 2.96 -68.87 -0.20 1.92 16 7 H 0.06 0.72 7.80 -51.93 -0.40 0.32 16 8 C -0.13 -1.65 9.40 37.16 0.35 -1.30 16 9 N -0.67 -10.69 5.59 -107.95 -0.60 -11.30 16 10 C 0.06 1.11 4.87 -3.82 -0.02 1.09 16 11 C -0.07 -1.59 2.48 -90.62 -0.22 -1.81 16 12 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 14 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 15 C -0.59 -17.19 8.41 -34.44 -0.29 -17.48 16 16 H 0.05 1.43 7.06 -52.49 -0.37 1.05 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 18 N -0.92 -28.75 13.65 55.43 0.76 -28.00 16 19 Si 1.07 25.94 29.90 -169.99 -5.08 20.86 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.26 -2.75 11.14 29.12 0.32 -2.42 16 24 S 0.10 0.91 23.18 -107.50 -2.49 -1.58 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 33 H 0.35 5.73 7.95 -39.29 -0.31 5.41 16 34 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 16 35 H 0.07 1.20 7.44 -51.93 -0.39 0.82 16 36 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 37 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 40 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 41 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 42 H 0.18 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -32.01 354.43 -9.66 -41.67 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.19 Total: 0.99 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -0.31 Total: -21.91 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.08 Total: -45.37 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.01 -9.66 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.053 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds