Wall clock time and date at job start Tue Mar 31 2020 06:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47184 * 2 1 4 4 N 1.29030 * 124.91519 * 90.00298 * 3 2 1 5 5 C 1.31780 * 117.12677 * 180.02562 * 4 3 2 6 6 C 1.50694 * 122.75390 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47450 * 215.02560 * 6 5 4 8 8 C 1.53003 * 109.46941 * 95.02478 * 6 5 4 9 9 N 1.46900 * 109.46881 * 335.02798 * 6 5 4 10 10 C 1.46897 * 110.99727 * 204.99699 * 9 6 5 11 11 C 1.53005 * 109.46940 * 179.97438 * 10 9 6 12 12 H 1.08995 * 109.47448 * 304.99654 * 11 10 9 13 13 C 1.53001 * 109.47080 * 65.00472 * 11 10 9 14 14 C 1.53002 * 109.46893 * 184.99774 * 11 10 9 15 15 C 1.50706 * 109.47153 * 174.99718 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.33642 * 114.49453 * 0.22942 * 5 4 3 24 24 S 1.70976 * 124.91563 * 270.00264 * 3 2 1 25 25 H 1.08991 * 109.47379 * 60.00061 * 1 2 3 26 26 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47156 * 299.99521 * 1 2 3 28 28 H 1.09006 * 109.47028 * 240.00127 * 2 1 3 29 29 H 1.09001 * 109.47657 * 120.00429 * 2 1 3 30 30 H 1.09007 * 109.46672 * 300.00160 * 8 6 5 31 31 H 1.08997 * 109.47308 * 59.99834 * 8 6 5 32 32 H 1.08998 * 109.47231 * 180.02562 * 8 6 5 33 33 H 1.00902 * 110.99874 * 328.94997 * 9 6 5 34 34 H 1.08997 * 109.47423 * 60.00043 * 10 9 6 35 35 H 1.09001 * 109.47481 * 299.99662 * 10 9 6 36 36 H 1.09000 * 109.46932 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46866 * 299.99538 * 13 11 10 38 38 H 1.09000 * 109.47309 * 59.99633 * 13 11 10 39 39 H 1.09004 * 109.47178 * 55.00508 * 14 11 10 40 40 H 1.08993 * 109.47411 * 295.00191 * 14 11 10 41 41 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 42 42 H 1.08004 * 126.03352 * 179.76808 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7133 3.3482 0.8795 6 6 3.0392 4.2719 2.0246 7 1 2.7747 5.2940 1.7537 8 6 4.5365 4.1966 2.3302 9 7 2.2760 3.8671 3.2127 10 6 2.0826 5.0014 4.1258 11 6 1.2850 4.5420 5.3480 12 1 0.3519 4.0830 5.0215 13 6 2.1062 3.5215 6.1387 14 6 0.9762 5.7475 6.2381 15 6 0.0875 5.3170 7.3765 16 1 -0.2253 4.2864 7.4573 17 6 -0.3262 6.2385 8.3148 18 7 0.0591 7.4924 8.2194 19 14 -1.4271 5.7047 9.7264 20 1 -1.7221 6.8736 10.5935 21 1 -2.6968 5.1576 9.1842 22 1 -0.7376 4.6585 10.5234 23 6 2.8362 3.7122 -0.4005 24 16 2.3585 2.3435 -1.4020 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8010 3.1744 2.6012 31 1 5.1029 4.4969 1.4487 32 1 4.7723 4.8644 3.1588 33 1 1.3914 3.4577 2.9520 34 1 1.5360 5.7923 3.6121 35 1 3.0533 5.3796 4.4462 36 1 1.5378 3.1939 7.0092 37 1 2.3262 2.6626 5.5047 38 1 3.0393 3.9806 6.4653 39 1 0.4686 6.5125 5.6504 40 1 1.9062 6.1529 6.6364 41 1 0.6310 7.7696 7.4866 42 1 3.1714 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602553939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:53 Heat of formation + Delta-G solvation = -6.110510 kcal Electronic energy + Delta-G solvation = -19723.143631 eV Core-core repulsion = 16827.964320 eV Total energy + Delta-G solvation = -2895.179310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14236 -38.55808 -36.49796 -34.94166 -33.98816 -31.41788 -29.68035 -28.39822 -27.15586 -26.28151 -24.98875 -23.68795 -22.05426 -21.15916 -20.56334 -18.90188 -18.50947 -16.89857 -16.53469 -16.16545 -15.77080 -15.71965 -15.52942 -15.28543 -15.11792 -14.56408 -14.22664 -13.83132 -13.74756 -13.50742 -13.24986 -13.09758 -13.00607 -12.87319 -12.61503 -12.56439 -12.38912 -12.11142 -11.98066 -11.94982 -11.82250 -11.59467 -11.31780 -10.59005 -10.52551 -10.51235 -10.36411 -9.69856 -9.36682 -8.66128 -6.34865 -0.27023 0.42223 0.73370 1.51914 1.60753 1.77839 1.79863 2.57513 2.97080 3.18075 3.20475 3.73921 4.02197 4.09101 4.15588 4.21543 4.30398 4.32662 4.36111 4.43243 4.51190 4.64432 4.68553 4.77380 4.83706 4.86867 4.91897 4.97871 5.05784 5.06582 5.14630 5.28128 5.30686 5.33197 5.35356 5.47115 5.62762 5.98130 6.10323 6.21548 6.37851 6.61904 6.86177 7.45861 8.74700 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.003222 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.927493 B = 8687.725536 C = 9360.538242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.039 3.961 4 N -0.485 5.485 5 C 0.053 3.947 6 C 0.156 3.844 7 H 0.061 0.939 8 C -0.126 4.126 9 N -0.669 5.669 10 C 0.077 3.923 11 C -0.066 4.066 12 H 0.046 0.954 13 C -0.109 4.109 14 C 0.018 3.982 15 C -0.606 4.606 16 H 0.051 0.949 17 C -0.042 4.042 18 N -0.941 5.941 19 Si 1.116 2.884 20 H -0.284 1.284 21 H -0.270 1.270 22 H -0.269 1.269 23 C -0.263 4.263 24 S 0.156 5.844 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.341 0.659 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.036 0.964 39 H -0.018 1.018 40 H -0.011 1.011 41 H 0.254 0.746 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 -13.695 -23.307 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.239 4.239 4 N -0.199 5.199 5 C -0.079 4.079 6 C 0.043 3.957 7 H 0.078 0.922 8 C -0.184 4.184 9 N -0.301 5.301 10 C -0.052 4.052 11 C -0.085 4.085 12 H 0.065 0.935 13 C -0.167 4.167 14 C -0.019 4.019 15 C -0.644 4.644 16 H 0.069 0.931 17 C -0.239 4.239 18 N -0.579 5.579 19 Si 0.937 3.063 20 H -0.209 1.209 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.403 4.403 24 S 0.411 5.589 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.000 1.000 40 H 0.007 0.993 41 H 0.063 0.937 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.538 -13.834 -22.227 26.760 hybrid contribution 0.417 1.120 -0.923 1.510 sum 5.956 -12.715 -23.150 27.075 Atomic orbital electron populations 1.21746 0.93068 1.03546 1.01867 1.20368 0.97003 0.86257 1.05197 1.27638 1.02279 1.02911 0.91037 1.66024 1.15250 1.06007 1.32665 1.20302 1.01575 0.91721 0.94346 1.20138 0.95884 0.93979 0.85665 0.92150 1.21711 0.92833 1.02081 1.01823 1.60429 1.24544 1.29789 1.15301 1.21944 0.99166 0.91199 0.92928 1.20873 0.97160 0.96279 0.94217 0.93533 1.21440 0.98178 0.98256 0.98795 1.19171 0.94514 0.93856 0.94397 1.22436 1.32806 0.97194 1.11961 0.93117 1.27412 0.99443 0.93485 1.03543 1.70916 1.35468 1.18089 1.33452 0.82955 0.74903 0.75517 0.72912 1.20901 1.19479 1.19434 1.27071 1.11930 1.05780 0.95496 1.83651 1.59645 1.04146 1.11438 0.92005 0.89528 0.93976 0.87232 0.89215 0.93082 0.90687 0.92404 0.84007 0.96479 0.91391 0.94528 0.91720 0.94455 0.99955 0.99318 0.93670 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.05 -0.67 6.52 29.85 0.19 -0.48 16 3 C 0.04 0.79 6.64 88.52 0.59 1.38 16 4 N -0.48 -12.65 9.76 -179.41 -1.75 -14.40 16 5 C 0.05 1.29 5.59 41.52 0.23 1.53 16 6 C 0.16 4.08 2.96 44.17 0.13 4.21 16 7 H 0.06 1.52 7.80 -2.39 -0.02 1.50 16 8 C -0.13 -3.01 9.40 71.98 0.68 -2.34 16 9 N -0.67 -21.24 5.59 -495.46 -2.77 -24.00 16 10 C 0.08 2.79 4.87 86.31 0.42 3.21 16 11 C -0.07 -2.89 2.48 -10.79 -0.03 -2.92 16 12 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 13 C -0.11 -4.52 8.89 71.98 0.64 -3.88 16 14 C 0.02 0.98 3.76 29.85 0.11 1.09 16 15 C -0.61 -35.66 8.41 25.60 0.22 -35.45 16 16 H 0.05 2.92 7.06 -2.91 -0.02 2.90 16 17 C -0.04 -2.52 5.46 84.65 0.46 -2.06 16 18 N -0.94 -60.13 13.65 21.45 0.29 -59.83 16 19 Si 1.12 51.82 29.90 68.60 2.05 53.87 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 C -0.26 -4.99 11.14 66.78 0.74 -4.25 16 24 S 0.16 2.44 23.18 -56.49 -1.31 1.13 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.43 7.45 -2.39 -0.02 1.41 16 33 H 0.34 11.35 7.95 -89.69 -0.71 10.63 16 34 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 35 H 0.07 2.45 7.44 -2.39 -0.02 2.44 16 36 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 37 H 0.06 2.41 7.75 -2.39 -0.02 2.40 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 40 H -0.01 -0.66 8.00 -2.39 -0.02 -0.68 16 41 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 42 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.52 354.43 1.99 -67.53 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.37 Total: 16.88 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 5.10 Total: -41.17 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -4.22 Total: -98.24 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.13 kcal Total: -69.52 1.99 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.420 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds