Wall clock time and date at job start Tue Mar 31 2020 06:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.29029 * 124.91082 * 90.00272 * 3 2 1 5 5 C 1.31784 * 117.11934 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74599 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47594 * 144.97019 * 6 5 4 8 8 C 1.53003 * 109.46926 * 264.96678 * 6 5 4 9 9 N 1.46900 * 109.47672 * 24.96779 * 6 5 4 10 10 C 1.46895 * 111.00238 * 155.00034 * 9 6 5 11 11 C 1.53003 * 109.47121 * 180.02562 * 10 9 6 12 12 H 1.08995 * 109.47354 * 304.99944 * 11 10 9 13 13 C 1.53000 * 109.46864 * 65.00005 * 11 10 9 14 14 C 1.53000 * 109.46985 * 185.00091 * 11 10 9 15 15 C 1.50707 * 109.46826 * 175.00275 * 14 11 10 16 16 H 1.07992 * 120.00098 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99607 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99834 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00395 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47080 * 90.00388 * 19 17 15 21 21 H 1.48499 * 109.47255 * 210.00152 * 19 17 15 22 22 H 1.48499 * 109.47137 * 330.00503 * 19 17 15 23 23 C 1.33639 * 114.50435 * 359.97438 * 5 4 3 24 24 S 1.70976 * 124.91946 * 269.69503 * 3 2 1 25 25 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 26 26 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 29 29 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 30 30 H 1.09007 * 109.47502 * 179.97438 * 8 6 5 31 31 H 1.08995 * 109.47593 * 300.00418 * 8 6 5 32 32 H 1.09006 * 109.46771 * 60.00330 * 8 6 5 33 33 H 1.00903 * 110.99735 * 278.96068 * 9 6 5 34 34 H 1.08996 * 109.47037 * 300.00270 * 10 9 6 35 35 H 1.09006 * 109.47179 * 60.00518 * 10 9 6 36 36 H 1.09005 * 109.46765 * 179.97438 * 13 11 10 37 37 H 1.08993 * 109.47660 * 300.00278 * 13 11 10 38 38 H 1.09007 * 109.47070 * 60.00165 * 13 11 10 39 39 H 1.09006 * 109.47226 * 294.99999 * 14 11 10 40 40 H 1.08996 * 109.47032 * 55.00145 * 14 11 10 41 41 H 0.97007 * 120.00101 * 179.97438 * 18 17 15 42 42 H 1.07994 * 126.03803 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0581 5 6 2.7143 3.3479 0.8794 6 6 3.0414 4.2711 2.0247 7 1 3.8896 4.8998 1.7539 8 6 1.8296 5.1538 2.3304 9 7 3.3805 3.4765 3.2128 10 6 4.2441 4.2371 4.1259 11 6 4.5756 3.3784 5.3481 12 1 3.6512 3.0329 5.8110 13 6 5.4099 2.1721 4.9127 14 6 5.3703 4.2112 6.3560 15 6 5.5909 3.4053 7.6103 16 1 5.2028 2.4001 7.6815 17 6 6.2874 3.9520 8.6671 18 7 6.4796 3.2490 9.7619 19 14 6.9582 5.6911 8.5442 20 1 5.9401 6.6507 9.0419 21 1 8.1899 5.8058 9.3658 22 1 7.2779 5.9993 7.1271 23 6 2.8433 3.7099 -0.4005 24 16 2.3656 2.3411 -1.4019 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.0659 5.8213 3.1591 31 1 1.5779 5.7434 1.4489 32 1 0.9813 4.5251 2.6013 33 1 2.5474 3.1577 3.6844 34 1 5.1662 4.5086 3.6121 35 1 3.7268 5.1415 4.4464 36 1 5.6464 1.5606 5.7835 37 1 4.8438 1.5789 4.1946 38 1 6.3343 2.5177 4.4498 39 1 6.3337 4.4821 5.9241 40 1 4.8135 5.1162 6.5988 41 1 6.9700 3.6334 10.5054 42 1 3.1831 4.6707 -0.7579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602553941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:59 Heat of formation + Delta-G solvation = 19.731152 kcal Electronic energy + Delta-G solvation = -19704.881376 eV Core-core repulsion = 16810.822644 eV Total energy + Delta-G solvation = -2894.058732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.13326 -37.22257 -35.01586 -33.75561 -32.15727 -30.28151 -28.69448 -27.20234 -25.94572 -25.06529 -23.58515 -21.91421 -21.31963 -19.80750 -19.06027 -17.53024 -16.75713 -15.86597 -15.08259 -14.81078 -14.73711 -14.69138 -14.38657 -13.98417 -13.46204 -13.28008 -13.03997 -12.88208 -12.43961 -12.35147 -12.24726 -11.93260 -11.66468 -11.59865 -11.48802 -11.36998 -11.18614 -10.90525 -10.66500 -10.32809 -9.87709 -9.61211 -9.60893 -9.46619 -9.36487 -9.01237 -8.79237 -8.47789 -8.06810 -5.98148 -3.94672 0.62548 1.26894 1.62892 2.77775 3.33512 3.41013 3.45011 3.91385 4.39848 4.50095 4.64552 4.84048 4.94508 4.99818 5.07808 5.15095 5.28963 5.35462 5.40689 5.53744 5.56731 5.64500 5.70764 5.73336 5.84841 5.87850 5.96816 6.09971 6.18431 6.36967 6.49565 6.67373 6.91773 7.12188 7.20459 7.30160 7.36035 7.54037 7.70080 7.80879 7.87563 8.62229 9.08278 9.64896 11.15411 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.003206 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.316866 B = 8730.836731 C = 9249.344755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.054 3.946 4 N -0.441 5.441 5 C 0.097 3.903 6 C 0.155 3.845 7 H 0.091 0.909 8 C -0.176 4.176 9 N -0.668 5.668 10 C 0.061 3.939 11 C -0.072 4.072 12 H 0.059 0.941 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.267 4.267 24 S 0.090 5.910 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.346 0.654 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.015 0.985 40 H 0.007 0.993 41 H 0.261 0.739 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -0.943 -24.685 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.225 4.225 4 N -0.155 5.155 5 C -0.036 4.036 6 C 0.041 3.959 7 H 0.109 0.891 8 C -0.236 4.236 9 N -0.298 5.298 10 C -0.068 4.068 11 C -0.091 4.091 12 H 0.078 0.922 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.406 4.406 24 S 0.345 5.655 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.052 -1.696 -25.378 27.732 hybrid contribution 0.069 2.283 1.102 2.536 sum -10.983 0.587 -24.276 26.651 Atomic orbital electron populations 1.21755 0.93615 1.02471 1.02555 1.20217 0.96607 0.87702 1.04311 1.27149 1.02932 1.01890 0.90569 1.66046 1.13401 1.05344 1.30662 1.20281 0.98586 0.91171 0.93518 1.20043 0.96792 0.90310 0.88729 0.89105 1.22485 0.98712 1.00225 1.02154 1.60381 1.22465 1.39042 1.07939 1.22235 0.95986 0.94839 0.93711 1.20983 0.99182 0.95881 0.93070 0.92220 1.21583 0.98431 0.97748 1.00310 1.19616 0.94951 0.95290 0.94818 1.21148 1.34552 1.01897 0.97302 0.90815 1.25032 0.95863 0.97463 0.95280 1.69921 1.42140 1.37285 1.05210 0.86806 0.78638 0.85609 0.78372 1.20470 1.21512 1.19075 1.26673 1.13971 1.04223 0.95744 1.83836 1.61622 1.06286 1.13740 0.91865 0.92623 0.91459 0.89899 0.88499 0.91608 0.92250 0.92111 0.83480 0.91682 0.95781 0.92363 0.93532 0.94412 0.96664 0.97436 0.92877 0.80957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.66 16 2 C -0.05 -0.39 6.52 -27.88 -0.18 -0.57 16 3 C 0.05 0.59 6.64 -13.45 -0.09 0.50 16 4 N -0.44 -5.93 10.14 -8.05 -0.08 -6.02 16 5 C 0.10 1.22 5.80 -84.22 -0.49 0.74 16 6 C 0.15 1.93 2.93 -68.86 -0.20 1.73 16 7 H 0.09 1.09 7.80 -51.93 -0.40 0.68 16 8 C -0.18 -1.91 9.14 37.16 0.34 -1.57 16 9 N -0.67 -9.94 5.39 -107.95 -0.58 -10.52 16 10 C 0.06 1.01 4.87 -3.83 -0.02 0.99 16 11 C -0.07 -1.46 2.48 -90.62 -0.22 -1.69 16 12 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.12 -2.48 8.89 37.16 0.33 -2.15 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 15 C -0.51 -14.69 8.96 -34.44 -0.31 -14.99 16 16 H 0.07 2.28 7.30 -52.49 -0.38 1.90 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 19 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 C -0.27 -2.81 11.14 29.12 0.32 -2.49 16 24 S 0.09 0.85 23.18 -107.50 -2.49 -1.65 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.72 7.45 -51.92 -0.39 0.33 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.35 5.21 8.47 -39.29 -0.33 4.88 16 34 H 0.06 1.08 8.05 -51.93 -0.42 0.67 16 35 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 36 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 37 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -31.75 352.77 -9.32 -41.07 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.24 Total: 0.64 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.35 Total: -18.67 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.11 Total: -44.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.75 -9.32 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.798 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds